LOC110525047 (psf2)


Basic Information

Item Value
gene id LOC110525047
gene name psf2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70036194 ~ 70039507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604994.2
ACCTTGGTCTTTTTAACCCAGGGCTACCGGTCGACGTGCCTGTGTGGCTGGCCCTCAATCTGAAGGATAGTGCCACCAGAGTGGATGGATGTAGAGAAACTGGAGGAGATAAGAGAGCtagagaggaaggaagacacattcACCCCTGTCCCCAGTCCATACTACATGGAGCTGACCAAGCTGCTACTCAATCATGCATCTGATAACATTCCCAAAGCGGATGAGATCCGCACACTGGTGAAGGACATCTGGGACACGCGCATCGCCAAGTTCCGCCTCTCCGCTGACAGCTTCATCAGCCAGCAGGAAGCACACGCCTTGCTGGATAACCTAACTCTGATGTAGATTAACATGACACAGTCGTTCCGGCTGGACACTCTCAACTGCATGTATAAACTGCGTTGAAACCTCCAGCTCGGCTCCAGTGGGGGCAAAGCCCAGCACCACTGATCTGTATTTACGGACTAGAACTGGACCTGGGCCGCAGCCTCTCCTCTCCAAAGCAAGATGGAGCAGACTTAGGCCCAGCTATACTAAACATTTGCACCGGCTGCAAAGTAAAATAacggaatcacggaatccagacattaaaacagaattcaactaaattctaaaatgcattgaacttagtagggaatgTTATTGAACATTAATTAGCCCAAGTTTATCATAAGGCATGAacagaatgcat
>TU611507
gacatgtttctgtggacataatggaaactatttggaattttcgtctgcgttgtcatgaccgctctttcctgtggatttctgaacataatgcgacaaacaaactgaggtattttggatataaaaataatctttatggaacaaacggaacatttgttgtgtaactgggagtctcatgagtgaaaacaaccaaagaccatcaaagGGCTACCGGTCGACGTGCCTGTGTGGCTGGCCCTCAATCTGAAGGATAGTGCCACCAGAGTGGATGGATGTAGAGAAACTGGAGGAGATAAGAGAGCtagagaggaaggaagacacattcACCCCTGTCCCCAGTCCATACTACATGGAGCTGACCAAGCTGCTACTCAATCATGCATCTGATAACATTCCCAAAGCGGATGAGATCCGCACACTGGTGAAGGACATCTGGGACACGCGCATCGCCAAGTTCCGCCTCTCCGCTGACAGCTTCATCAGCCAGCAGGAAGCACACGCCTTGCTGGATAACCTAACTCTGATGTAGATTAACATGACACAGTCGTTCCGGCTGGACACTCTCAACTGCATGTATAAACTGCGTTGAAACCTCCAGCTCGGCTCCAGTGGGGGCAAAGCCCAGCACCACTGATCTGTATTTACGGACTAGAACTGGACCTGGGCCGCAGCCTCTCCTCTCCAAAGCAAGATGGAGCAGACTTAGGCCCAGCTATACTAAACATTTGCACCGGCTGCAAAGTAAAATAacggaatcacggaatccagacattaaaacagaattcaactaaattctaaaatgcattgaacttagtagggaatgTTATTGAACATTAATTAGCCCAAGTTTATCATAAGGCATGAacagaatgcatcagtgatttgTATTTCCTGTAACTTTTctattaaaaaatgttttttttttagtgAAAACCTGAATTTACGGACTAGAACTGGACAAAAACCTGAAAAACAAAATTTAAATTTGAATAAAATCGAAAAAAAATAaacttcttgtgacatcgggtgctgtaggtgtcatggagggcaggtagtttgccccctagTGAGGCGTTGTGCagactctggagagccttgcggttgagggcggtgcagttgccgtaccaggttgtgatacagcccgacaggatgctctctatTGTTTATctataaaagtttgtcagggttttgggtgacaagccagatttcttcagcctcctgaggttgaagaggcactgttacgccttcttcaccaaactgtctgtgtgggtggaccatttctgtctgtctgtgttgtgtacgccgaggaacttataACTTTCGACtgtctccactgctgtcccttcgatgtggataaaggggtgctccctctgctttttgctgaagtccacgatcatctcctttgttttgttgacgttgagtgagcggttgttttcctgacaccacactccgagtgcactcacctcctccttgtaggctgtctcgttgttgttggtaatcaagcccactactgttgtgccatctgcaaacttgatgattgagttggaggtgtgcatggtcACGCAGTCTaagggtgaacaaggagtacaggcgggggctgagaacgcacccttgtggtttccagtttacatagagtccagtgaagttcctttagggctgtcttggtgtctgcttgagggggaatgtacccagctgtgactataactgatgAGAATTCTCTTGGGGGGTAAAATGGCcgacatttgattgtaaggaattctaagtcaggtgagcagaaggacttgagttcctgtgtgttgttatgattacaccatgagttaaTCATGAACCACCACACATAAGATATCCTGGGGTAGCAATGTgagaaaaaatacataaaaaaaacgaaatactgcatagtttcctaagaactcgaagcgaggcga

Function

symbol description
psf2 Involved in chromosome condensation. Part of CMG complex and GINS complex. Is expressed in organism. Orthologous to human GINS2 (GINS complex subunit 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604994.2 False 691 mRNA 0.49 4 70036988 70038457
TU611507 True 1922 TUCP 0.45 5 70036194 70039507

Neighbor

gene id symbol gene type direction distance location
emc8 LOC106587369 coding upstream 8059 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 280155 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 304332 69724498 ~ 69732656 (+)
gas8 gas8 coding upstream 328254 69700287 ~ 69708734 (+)
trnav-cac-7 NA coding upstream 336851 69700065 ~ 69700137 (+)
LOC110526484 LOC106587367 coding downstream 10693 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 513306 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 556290 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 577019 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1643144 71681601 ~ 71690360 (+)
G539959 NA non-coding upstream 19858 70015270 ~ 70019477 (+)
G539949 NA non-coding upstream 34165 70002196 ~ 70002823 (+)
G539927 NA non-coding upstream 53471 69981682 ~ 69983517 (+)
G539925 NA non-coding upstream 61690 69975094 ~ 69975298 (+)
G539904 NA non-coding upstream 95259 69941513 ~ 69941729 (+)
G539980 NA non-coding downstream 8356 70046813 ~ 70047132 (+)
G539985 NA non-coding downstream 15760 70054217 ~ 70054496 (+)
G539986 NA non-coding downstream 21510 70059967 ~ 70061147 (+)
G540008 NA non-coding downstream 51503 70089960 ~ 70090983 (+)
G539068 NA other upstream 669346 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1025026 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 1034160 68996083 ~ 69002828 (+)
G538859 NA other upstream 1130141 68906045 ~ 68906847 (+)
G540179 NA other downstream 443493 70481950 ~ 70484368 (+)
G541903 NA other downstream 1761583 71800040 ~ 71804462 (+)
G542053 NA other downstream 2062923 72101380 ~ 72102474 (+)

Expression


Co-expression Network