gse1 (LOC106587451)


Basic Information

Item Value
gene id gse1
gene name LOC106587451
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70062547 ~ 70519005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980868.1
TTCGTAGGAGAGGTGACCCGTGATTCTAACAAGAGTTTTCTTCTCACATTACCATCGGGTTCGCTGTCCTATACTGCGGACTGGAGACACTGCGTTTCTGCTCAATGTTTCATGGACGGTTTGAATAGATTATCTCTAACGGAATACTTGAAAGCCAGGAATTTAGTCTACGGTTCGCTGCCTGTTCTGCAGTGCTGCAGTTTCAATGGGCTATCGGCTATCTATTCACCGTGAGTAGGCTGAACGCGATACGCTGTCTTGTTGCATAGCCTACTTTTGTAAAGGTTTGAGTTTGTTAGAATGAATTGCGCTTTTGGTATTATGTCATGTAGTCTGGGGTGTTTTTAGAACTATGAATGACCCCCGTGACAAGGATTTAATACCGATATCTCGGAAACACCGATTCATGGCTGCAATAATGCCCGGGGACGAGAGCCCATCGCATGGCAACACTTCCAGGGCTGATCGGAATGGGATAGGATTGGTTCACTGTTTTATTTGTGGAAGCGGCGTTTCGCCCGGAAAAGAATTGAGATTACAAGTGAAATATCCGAAAGAGAATGGTCCGTTTTTCCCGTTTTTACAAAACCAAGAGCCAGCGCCAGGGGCATGTGAAGTCAGCCCGGATGGACACGCTACGGTGTGCGCCGTGTGCCACTGTTTTCTGGGGGAGCAGTGGAACTCGTTCGAGCGAACTAGGACACCAATAGAGAAGCGTATGTACTGGCTGAAGAGGCCGTACCAGTGCGACTCTCGGCGGATACCACAGGAGTGGAACATCTCCTATGACCTGGAGAGGAGAATCAGTGTCAGCAGCCAGAATTACGACGGGAACGAGTCAGATTTCTCCTCTTTCTCGGAAAACGAGAACATGTCAGACCAAGAACTGGATTTAGTAGACCGCGCCGGTGTGAGCAAGGAGAAGTACAAAACATCTGCCAACAGCAGCAAAACTCCCAGAGACGGTAGCAGGAAGAACAACAACAGTGTTATCAGTGTTAAAAACAGCCCTGACTCTCAACGGGCTATCCGCTATCCGGTTGGTGTCTACCAGGCACAGGACTCGCCGAAATCGGATAGTGCCATGCCGTCCAGGCGCGGTGCTAAAATTATGAATCATGTCTCTCAATCATCATTATCTCTGTCCCAAGAGATTGTGTCCCAGAGATACTATGACAGCTCTCACGTCGACACACCTGTGCAGGACAACGGGATCATTATGCGCAACAGGCAGTGGCTAGCGGAGGGGAATGTCAGACACGCTGACCCGCGCCCTCTCCAACGCGCTGCTGACAGCAGCTGTAGCTTAACCAGGCATCCCTCCCTCATATTCCACCAGAAAGGAGAGGATCTCGCTGACGCTGCCGACGGGCTATCACCCATTGGCACCACTGTCACCTCTAGGCGCGACGCAGCAGCACCTAGAGAAAGTGTTCCGGGTAGGTTTACAGCCTCTGACAACTCTGACAACGACCATGAGATCAATATAACCAGTGACGACGACCGCGAGGTGTTTGAAGCAGCTGGCAGCAGCAGAGAGAGGGTATTGGCCCTGCTGAGACCACCCAGGGACGCAGCCGGGAGGGTCATTGCCATGCCCCAGAGTGGTGCCAGTGGGGGTGCCAACAGGAGTACCAGTCccgaggagtgtgtgtgttacatctGTGGCAGCGGGATGTGGCAGGGCGGGAGGTTCCGTGTGTCTGTGCAGAAGCAGGAGAGGGCAGCCAGCGAGCCCTTCTTCCCCTTCCTGTGGTTACACAGCCCTCCCCCTGGCGCCATGCCCCTCACCCCGGGGGGCACCACCCTGGTCTGTGCCAGCTGCCACACCTCCCTCATGCAGCAGTGGCAGGGCTTCCAGCTGGCCGACGTGCCCGTTCTCCAGCGCCTCTACGTGGTCCCCCTCAACCAGGGCTCCTCCACCCCTGCACCAGCCTCGGGCCACCCTCCCTACCTCACTCCCCAGGAAAGGCACCCCTCAGAGCCCCCGGACCGCCTACCTAAGTCTCAGGCTTCCTGTGAGGCCTGTTTCCTCTGTGGCCAGGAGTGCGGGCGGGATGTGAGGGTGGCACATGCACGGGCCGGCGTGGGCAAAGCCCGCGGTGCCATGTATTTCCCCTTCATCAACCTGCTGCCGTGCCCGCCTAGTGCCCAGGGAGTGAGGAACGGCCGGGTGCACTGCTGTCCTCCATGCTACGCCATCCTGGAGGAGATCTGGGGGGCGTACCGCCTCAGCCTCAGTGAGGACCTCATCACCTCTGTCACCTCCTTCCTGGGGAGGTACCACGCAGCGCTGGCCACGGGGGGAGCCGGACTGGCCCATTCCCAAAAGCGggtgtcctcctcttcctctggccATGGTGCGTCTGTatcagtgtgttacctgtgtggggCAGAGCTAGGGGTCGGGGGGGAGTTCCAACTCCATGTCAACCCTCCCGGgcgctgtggagagagagagcccttcTTTCCCTTCCTCACCATCCACCCCCCCGCTCCCCGCGCCAAACCTGCCGATGCCACCGGCCTGGTGTCAGCCTGTGCCCTCTGCTATCACGACCTGCATGCCCAGTGGGCTCAACATGAGAGCCAGGGTTCTGCCACCCCCAGCTCTACAGCCCCAGGCCCAGCCTCCTCCACCCCCCAGCCGGCCAGCTCTCCCTGGGCCAGACAGTACAGCTGCGAGGCCTTTGTGTGCTTCTTCTGCAGACAGGAGCAGAGGCGTCAGGGGGGGCTGTGTGCGGTCACAGTGGCCAGGCTGCCTGTGTTCCTGTACGCCCCACGCGGGCGCCGCACCCTCCTGGTGGATGATGGGAGGAAGCTGGTGATTGGCTCGTGTGTTGAATGTAAGTCCATGGTGCTGGCGGGACAGAGCATgcagcaggagagagacagggacggggagggacagggagacgggaggacagagacagagtcacCTCCCCCTACATCACGCCCCAGACACAAGACATCCAGTGTGATTGAGGGCGTGGCCAGAGTCAGCAAGGAGGCGGATTCTGCCTTACATACATCAGCAGTGAGCGAATCACAATCAACGGAACCTGGGGTTGGCCACACCCCTTCTCTACCCCCCAACCtggagccagagagaggagaccgCCCACCTTCCAgcatGAGCCATGAGCCAAAGTCACCTTCCTTAGGAATGATATCCACGGCAACTCGCACCACGGCGACGGTCAGCCCCCTCACCCCGTCGCCCCTTAACGGATCTATCGTAGCCAATGGGAGCCCGGCGGCCCAGTCTGCACACTCTGGATTCGCCGCCGCCCTCCGTAAACTGGCCAAACAGGCGGAGGATCCTCGAGCTGGCTCGTCCATCAGTAGTGAGTCGTCTCCGGTCTCGTCCCCAGCCACCAACCACAGTTCTCCAGTGAGCACACCCAAGAGAGGCCCCCTGGGCCCAGGGCCTGTCCTGGTGCCACCTGGGGGCCACAGTGTGCCAAGCACCCCGCCCGTCGTCACCATTGCCCCCACCAAGACCAGCAACGGTCTCTGGAGGAGCGAGGCACGCCAGactGACTCGGGCCCTCGTGGGGTCAGTAGGGAGCGTCTGGGAGCAGAGGCGCCCCACCAGCAGGAGAAAGGTGGCCCCTCAGTCCCTGCTCACCTCATAGGAAACCCCTATGCCTTTGGCCTGAGCCCCGGTGCTGTCATGCAGGACGCACGCTTCCAGCCCCTCAAtcTGCCCAGGCAGCTGCCCCATGGAGTGCCCCCTGGTGGTGTACCAGAGGAGTACCTGCGGGGGTTCCGCCCCTACGCCACGGCCGAGGACCTCCGCATGCCTTCTGGGCTGCCCCTGGGCCTGGACCCCGCCACCGCCGCCGCGTACTACCATCCCTCCTACCTGCCACATCCCTCCTTCGCCCCCTACAGgatGGATGATCCGTTCTGTCTATCAGCTCTGAGGTCACCGTTCTACCAGCTCCAAGGAGGGGGAGGCCTGCCCCCCCTGCACCCCTCTGCTGTCCACATGCACCTGCAGGGGGTCCGCTACCCTGGGGACCTCACACACGCCTCACTGTCCGCTCTGCAGTCTGAGAGACTGTCTGAAAGGCTCCAGATGGAAGATGAGCTCCgacagcgagagagggagcgCGAGCGTGAACGTGAGcgcgagaaagagagggagcgtgaggcagagcgagagaaggagcgggagagagaaagagagagggagcgagaaagagagaaggagctggagcgggagagagagcgtgagcgggagagggagcgggagagagagaaggagcgagagagagagagggagatggagaggcagaaggagaggcagaaggagagagtgatgagagagaaggagctaCAATCCAAGGCGATGGAGAGTCACTACCTGGCTGAGCTCCATGCcatgagaggacaggaggacagaacCAAGCCTGAGAGACTCACCCCCAACCGGCCAGACAAAACCAAAGAGCCCGCCCTCCAAGCTCCTAAGCCAATGCCACCAGGCCTCCACTCCTCCCTGAGCCAATCACATCATGGCGTTCCTGGCCTGGTCTCTGCCCATGGCCTCTACCTGGGGCCCGGCGGCGTGGGGGCGGGTCTCACCGCCGCCATGATGCTCCAGCGGACCAATGAGGAAGAGCGCTGGTTGGCGCGGCAACGGATGCTTCGCCAGGAGAAGGAGGATCGTCAGTACCAGGTGTCAGAGTTCAGACAGCAGGTCTTAGAGCAACACCTGGACTTGGGACGAcctggggagggaggagagctACGCTCCGACACacacaggtCCATACCAAATCACCACGAGCCGGGTGGCCGCGACATCCACCCCCACCTGGgcgcccctcctcctctcatctcccccaaACCCCTCCAGTCCCGcgaccacccccacccccctcctcccaccACCCTGTGGAACCCCGCCGCCCTCATCGATACCGCCTCGGACTCACGACGCACCACCCACCACGACCCACCGGGCTTGGGCCACTACGACCTCAGCCGCTTGCCTCCCAAACTGGAGGATGGGCTCCGGAGGGGCAGGGACCGGGACGGGGGCCTGGAGAAGTACCACCCCCCACTCCGAGGCCCCCCGGGGCTGCCTGAGCCCAGCACCTTCCTGGCAGAGCTGGAGAAATCCACCCAGACCTTCTTCAGCCAGCAGAGGGCCTCGCTGTCCCTGCCCAGCCAGTACGGAGAGCTGGGGGGAGGGATGAAGAGCAGCGGGGCCCTGAAGAGCCTCCAGGGGCCCCCAGGAATGGGGAGACAAAGCCAGGCCCAGGGACACAGTCTGGGCCAGGGAATGGGGCCCGAGTCTGGCCTAATGTATGATGAGTTTCTGCAGCAGCACCGTAGGCCTGTCAGTAAACtggacctggaggagaggaggaggagagaggccaggGAAAAAGGTTACTACTATGAGCTGGATGACTCGTATGATGAGAGTGATGAGGAGGAGGTCAGGGCCCACCTCAGGAGGGTAGCAGGGCAGCCCCCTCTCAAACTGGACGACTCCACAGAGAAAGTGGACTTCCTGTGTGTTTTTGGTCTGACCACGGTGTCACGACGTGACCACCTGGTGCagcagaagaggaggaagaggaggaggatgctgaGGGAGCGGAGCCCCTCGCCCCCGGCTGTTCTGTCCAAACGCACCCCTCCTCCCCCGGCCCCCCTCAGCACCCACTTCACCCCAGAGGAGATGGACAGAGCCCCCGAACTGGAAGACAAGAAACGCTTCCTCACCATGTTCAGCCTGTCCCATGTTTCTGTACAGCAGAGGAGAGataATGAGACAGTGGTAGAGTTGCTTCAGGCTATTAAACAGAAGAGCGTAACCTTGGATACCATCAGACATGCCCGTCACCCCCTATGTAAGACCCCCCCAGCACAGAACTCAGATCCTGCCTCAGCGCTTTCCAGCGAATCAGATGAGCCATTCGGTGTCAGTCCCTCCTCCCTCGGCGGACTCCTGGGGCAGCCtaaacccccctcctcctctgacgCACTGAGACCAAAGGACCCCCCTCCTCCGCTCCCCTACTCGGAAAAGACCCGTGGGCTCCCTGAGGGCCCCCCCTCCAAGAGGAGCTCGTCATCCAGCCTGCTGAATAGCCTGCGCCCCCCCGTGCAGCCTAAAGATGCTCCCCCCAGCCTGAACGGCCGGACCAAGCCCTGGGAGAGCTTTACTGCTGAAGAGTTTTCCCAGCAGTTCCACGAGTCCGTCCTCCAGTCCACACAGAAGGCCCTGCAGAAGCACAAAGgtggagCCACAGTGATCTCAGCGCCCTCTCACCTCCAGGACTCCTCAGTGCACTACAACATTCCAGAGCTGCAGAGCGCCCCCAGCCGGCCgcccccgccacacacacaccctcacacacacccgcACGCACACTCCATCCAACACCCGCAGTCACACCCGCACCCCCAGCCCAATGGGCAGCACTGTCCCCCGCACCCCCACCGAGAGCCCCCAGGAGTGAGGGAGGAGCAGTCTGCACCAGAGGActcagaagaagaggaggaagaggaggaagaggaggccccAGTACCCAGGTGGCAGGGGATTGAAGCGATCTTTGAAGCCTATCAGGAATACATTGAAGaGCAAGGTGTGGAGCGCCAGGTGCTGCAGAGCCAGTGTCGGAGACTGGAGAACCAGCACTACAACCTGAGCCTGACAGCAGAACAGCTCTCCCACAGCATGGGGGAGTTGATGTCTCAGAGACAGAAGCTGGCGGTGGAGAGGGAGAAGTTACAGGCCGAGTTGGAGCACTTCAGGAAGTGTCTGACGCTGCCGCAGCCCCACTGGGCCAGGGGAGGGCACTACAAGGGTTACCCCCCCAGGTGACAGCTCCACTGACCCCCAGGCCTGGCCCCCTCCCTCCCCGCCCAAACAGAGTTTATTTTTATGACCTAGCCTGGATCTGGACCCGGATGGACAGCtccacaggagagagggatggacagctccacaggagag

Function

NR:

description
genetic suppressor element 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980868.1 True 6985 mRNA 0.60 17 70062547 70519005

Neighbor

gene id symbol gene type direction distance location
LOC110526482 LOC106587370 coding downstream 38025 70015270 ~ 70024522 (-)
dusp22a ds22a coding downstream 47615 69975945 ~ 70014932 (-)
irf8 NA coding downstream 96523 69958081 ~ 69966024 (-)
LOC110526478 foxf1 coding downstream 323014 69735574 ~ 69739533 (-)
LOC110526474 LOC106562278 coding downstream 367068 69658483 ~ 69695479 (-)
LOC118964928 NA coding upstream 8091 70527096 ~ 70556412 (-)
LOC110526959 LOC106587454 coding upstream 73553 70592558 ~ 70593481 (-)
LOC110526960 atmin coding upstream 80996 70600001 ~ 70613388 (-)
LOC110526488 LOC106562298 coding upstream 104823 70623828 ~ 70666213 (-)
mafa maf coding upstream 497042 71016047 ~ 71136889 (-)
G540358 NA non-coding downstream 1397 70059967 ~ 70061150 (-)
G540323 NA non-coding downstream 5393 70056389 ~ 70057154 (-)
G540357 NA non-coding downstream 11404 70050910 ~ 70051143 (-)
G540355 NA non-coding downstream 17766 70044555 ~ 70044781 (-)
G540353 NA non-coding downstream 19706 70042373 ~ 70042841 (-)
G540635 NA non-coding upstream 1280 70520285 ~ 70558002 (-)
G540664 NA non-coding upstream 57804 70576809 ~ 70577015 (-)
G540672 NA non-coding upstream 68089 70587094 ~ 70591191 (-)
G540673 NA non-coding upstream 74798 70593803 ~ 70594088 (-)
G540638 NA non-coding upstream 78857 70597862 ~ 70598783 (-)
G539714 NA other downstream 372532 69688907 ~ 69690015 (-)
G539674 LOC106587381 other downstream 446228 69615754 ~ 69616671 (-)
LOC110526462 NA other downstream 773051 69272988 ~ 69289496 (-)
G539306 NA other downstream 1056882 69002743 ~ 69005665 (-)
LOC110526455 LOC106587401 other downstream 1108883 68949510 ~ 68953699 (-)
G541798 NA other upstream 1090526 71609531 ~ 71613840 (-)
G543091 NA other upstream 2081270 72600275 ~ 72721818 (-)
G543092 NA other upstream 2140451 72659456 ~ 72666713 (-)
G543224 LOC106587514 other upstream 2290772 72809777 ~ 72810172 (-)

Expression


Co-expression Network