LOC110526485 (fam92b)


Basic Information

Item Value
gene id LOC110526485
gene name fam92b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70551763 ~ 70558098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980869.1
AGCAACCAACTAGCTCGTAACCCGGGGCAGGCGAGAGCTTGGCAATAAGGCAAATACCGCAGCTCAACAGTGAGGTGAAGTGACGCTTGAGCAAATCCAACATGAACACCATCTTCTCAAGagacagacagataaagagcATGGAGCTGACAGTGAGCCATGCTGAGAAGTACCTGGGTCAGTTCTGCAGCCTGCTGGCCTCTTACACCAGGAAGACAGGCAAGCTGAGGGACCAGGCTGACATGCTGGTCAGACAGCTCAATGACTTCTCGAATACTGAGGACCCAGAGCTCCGTACCTGTCTGAAGAACCTGGCTGAAGACCTGGCCATGGTGCAGGACTACCGCCAGGCtgagATAGAGAGGCTGGAGACCAAAGTCGTCACTCCCCTCAAAGCCTATGGAGATATAGTTGAAAACAAGAGAGCAGATCTGAAGAGGTTCAATGCTGATCGGGACAGAGCGCTGAAAGAGCTGCAGAAACTGGAGAAACTCCAGCAGAAGGATCCCTCCAATAGACAAAGAATTTCACAGGCAGAGGTGAATGCTCAGAAGGCGACCAATGATGCTCACCGCAGCACCAGACAACTGGAGGAGACCATCAGTGACTTCCAGAGACAGAAACTGGAGGACATCAAGAGGATCTTCACAGACTTCATcacagtggagatggtgttccATGCCAAGGCTCTTGAGGtctacacacacaccttccagaaCCTGGACAGCATGGACATAGACAAAGACCtggagCTGTTCATTGGGAGGATCAGGGTGTCTGACAGCCCTCTGGACAACCAGACCCTGCTGCCCTCCTCTATGGCCCACCAGCCTAGTCCCACCCTGGGCTCCAGCCTCAAACACACTGCTGAATCAGCCAAGAAGTCCCGTAGCAGCATCCTACAGCGCcagaggggtgtagaggaggaggaggaggatgaagaggaggagtatGAGTCAGAGATAGAGGCTCAGCAGAGCAGGCAATCCTACGCCTCTCAATACACCCAAATACTCAGACAGAAGAACTGATAGATTGGAggtacacacacaaatgcacccaaaaagacacacacacacagagagagaaagacactgcGTCTcttcacacacatgtacacacacattcaGATATCCGTATAGATCTGCTGACAGATGAGAATATGTAGTCAGTGTCTGTTGTCAGGTAAAGTCAATACTCAGGGTATGTACCGTACTGCAATAGATCTGTTGATGACTGTGCAGATGTGTTCCTGTACAGGGTTTGCAGTAAGTTGTTCTGCAAATAATGCTTTGTCAATGGAGGCATTTGGCACTTAAGACAGACTGCAATCATTTGTAATCAGCCATAGCTGAGGTATAGCTGAGGAGTGATAATGTGTTCACATTTTATAATGAAAAACAAATCAATGTTCAGTAATGGTTGTTATTTAGAATGGGAAAGTGAAGAATACATTATATTCCTAGATATAAATGTAAACATATCAAATAAATTGACCCATTTGCATTAAACCTGAATGAGAACTCTCATCATCAT
>TU611726
GAGAGCTTGGCAATAAGGCAAATACCGCAGCTCAACAGTGAGGTGAAGTGACGCTTGAGCAAATCCAACATGAACACCATCTTCTCAAGagacagacagataaagagcATGGAGCTGACAGTGAGCCATGCTGAGAAGTACCTGGGTCAGTTCTGCAGCCTGCTGGCCTCTTACACCAGGAAGACAGGCAAGCTGAGGGACCAGGCTGACATGCTGGTCAGACAGCTCAATGACTTCTCGAATACTGAGGACCCAGAGCTCCGTACCTGTCTGAAGAACCTGGCTGAAGACCTGGCCATGGTGCAGGACTACCGCCAGGCtgagATAGAGAGGCTGGAGACCAAAGTCGTCACTCCCCTCAAAGCCTATGGAGATATAGTTGAAAACAAGAGAGCAGATCTGAAGAGGTTCAATGCTGATCGGGACAGAGCGCTGAAAGAGCTGCAGAAACTGGAGAAACTCCAGCAGAAGGATCCCTCCAATAGACAAAGAATTGTATCCTTTCTCCCAGTCTATTTATatctgcatatacagtgccttgcgaaagtattcggccccctt

Function

NR:

description
LOW QUALITY PROTEIN: protein FAM92B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980869.1 False 1536 mRNA 0.48 9 70551763 70558098
TU611726 True 561 TUCP 0.50 4 70551795 70553920

Neighbor

gene id symbol gene type direction distance location
LOC110526484 LOC106587367 coding upstream 493700 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 513306 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 522834 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 794930 69739619 ~ 69756833 (+)
LOC110526477 mthfsd coding upstream 819107 69724498 ~ 69732656 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 36649 70594747 ~ 70599188 (+)
cmc2 cmc2 coding downstream 57378 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1123503 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1403826 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 1452997 72011095 ~ 72021875 (+)
G540201 NA non-coding upstream 16550 70534488 ~ 70535213 (+)
G540191 NA non-coding upstream 44045 70507362 ~ 70507718 (+)
G540187 NA non-coding upstream 54159 70497395 ~ 70497604 (+)
G540186 NA non-coding upstream 55721 70495842 ~ 70496042 (+)
G540180 NA non-coding upstream 65791 70485739 ~ 70485972 (+)
G540221 NA non-coding downstream 20522 70578620 ~ 70578901 (+)
G540228 NA non-coding downstream 35707 70593805 ~ 70594162 (+)
G540231 NA non-coding downstream 45297 70603395 ~ 70603644 (+)
G540233 NA non-coding downstream 47544 70605642 ~ 70605879 (+)
G540179 NA other upstream 67395 70481950 ~ 70484368 (+)
G539959 NA other upstream 532286 70015270 ~ 70019477 (+)
G539068 NA other upstream 1184121 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 1539801 69007055 ~ 69018414 (+)
G541903 NA other downstream 1241942 71800040 ~ 71804462 (+)
G542053 NA other downstream 1543282 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1592922 72151020 ~ 72152394 (+)
saa saa other downstream 2107362 72665460 ~ 72666872 (+)
G540211 NA non-coding downstream 187 70554107 ~ 70574553 (+)

Expression


Co-expression Network