si:ch73-103b9.2 (cssa26h16orf46)


Basic Information

Item Value
gene id si:ch73-103b9.2
gene name cssa26h16orf46
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70594747 ~ 70599188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607495.2
TACATTTTCTTAGATAACATGGAGATTAGCAACAACCTGTCAACTGCAGTTTGTTTTCTCACGCCCCCTCCTATTTCTCTCTTCGTTTCCCCCTACGTCACTTCTGAGCGCCCTGTTGTAGCGGAGTTGTCATGGCAACGACGTTCTATCTCCGCTCCAAACACTTCGTGGGCCAAGCACATCTTTGACTTTGTTTGGGTTCGTCTCCCGATACCTGCCAAACTGTAATAAATATTTGATGACTATTCTATGTTACTGCCTATTAAGTTGAATGTCAAACCCCCAGGGAGCAAATGCTTGTATGGTATTGCTGAGGAAAATGTCGAACTCGACCCACTTTAATGatTTCACCCTGAAAGGCTCATCTTAGAATGGACAAATTCAAGGAATGGGATCAGGCGCCTGTAGAAGTGGCTGAAGACAGAAGTGTGGCAGTCGAGTACACAGGATGGGACCAGAGCTGCCAACTACCCAACAGGGGCCATGTCGATGCCCTTTTGGATATCAGCGATGATACCTCATCCAAAGAGCAGGAGCCATTtgagtttctctgtctctccggATGGGAGGAAGCTATCCGGGGCTGGGGTAGAACTACTCCACTTGGCTGCCTGGTTCAGacccagaggagaggaaagagggtcAAGACTGGAGACACAGACCACCACTGCCACCTGTGTGTGGACCTCGTGAAGCTCTCGGACCCCCCTGACTCTGAATCCAGTTTAACCCACTCCCCTGAGTCCTTCTGGGACTCCACCCTGGACCCATGGGCGAAAACCTCCCCCACAAGCCTGGGAGACTTCCTGAACAGACCCTACAGTCACACCTCTAGCATCTCTTCAGAGGAGTCCCCACCAGAGTCCTTCAGGGACCTTCAGAAAGCCACACAGCAACTGACACTCCGAGACAAGATGATGGAGGACAAGGGTGAGGTGTGTGAGATCAGTGACTCACTGCTGGGCTTGGCCCCCTCGCAGGGTCACCACCACTCAGCCTCAGAGTGTCCCATGACGCTGATCATCAACAGCTTCGCCGTCCTACCGCCCGTGAAGGCCTCCCAGCCCAGACACCCTAAGGTCACCAGCCAGCTCCGGAGGGGGGAGGCTGGACCGGGACGCAGCGCCTCAGACGGGGAGACCGCAGAGGCTGGGTCAGACGGTGTCACGCCTGCCTGGGAGAGCGGAGGAGGTGTGGAGAGCCAGCAGAGCCGCCACCTGTTGTCTGCATTCAGCATCCCTGTCCCCAAGAGATGTGACATGCCCCTCAGCACACTGTCAGATCCTCTACCCCGTGCCACCTACCCCCTGGACAGACACCTCAGACAGGATCCCCGGACCAGCAGTGCTCATAGACTCTACTTTGGACTGAAGACTAAGATTCTGAAGCGTGCAGAGCCACAACTGCCCATTCTGTTTGGAACCAGGGTGCCCATCCCAGCCTCTGCACAGAGACTACTCTGAACAGAGACTGTTACTTCGCACTCCATACTCTCTCCCAAACCAAAAGCTCAGCCTCTGTGGGTTTGTGATTAAAAATAAACTTAGTGAAATTTCTTCATATTTTTTGTATGACACTGAtgactgtatataaaaaaaaagctGTGACTAATTCAACTTGGTCGTATTAAACTACATGGAATTTACATGAGTTTACAGATTTGTTAGTTCTATGTGATTTATAGGCTATACCACCTCAGCCTTCCTTAATTATAAACCCTCCACGCACCTGGACATGAGTGAATCATTTTAAATGGAGTGAtaaatgtatgtatgcatgtgtgatTTCAGTCCTACATTTTGCATGTGCTTTTATTGTAGTGCTCACACTTGAGCTTTTAGTTACTCAGCAACTATGCTACCTACTCTACAATGCTGAGGTCTGGGTCGGTTTCTTGGTTTCCTGAATGTTAAACTGCAGACATTCTTATGTCAGAACTCCTCATCAAGACAAAACATATGAGCCATTGCCAAAGCATGCTAGTGCACTCTAATGGAATGAGCAGTCAGTGATTGTAGTGTTCCAACCCATGTGAAGATGTCATTGGTAGCCTATTGAATTACATGCTAGAAGTGAACCACACTGTGACTCTGAGGGGCTGTGACAGCATAGGTGTGTGGGCAGAGGGATTAGTATCATATTCCAAATGACTTACACAATTACAATCCTGTATTCAAACAGACTGAGCATAATACATGTACATAGCAAACTAACTTGTACTGCCACACAACCCAGGTGAAAAATGTGACTGACATTTACCGAAAAAGAGCACATTGAGGTTGTACAATATTGAGTATGGTGTTGTAAATCAAAAGTAGTGTGTGCTTTAACCAGTAACAAAATATTTGACTTGGCTTTATACAGCACTGCATTACTGTCCTTTGATTTGAAGTGTACTGGAACTAAGCTAGTACAAACAACCAGCTACTACATCAACTCAAACAATCAACCCTTTATGAAGAGTTTATTATGAGCGTCTGCCGAATAGCATCAACACAAGAGGCAACCTTGATCGACCCATCTACACATTCAGGCAACTGAAATACAACAGATAAGGCTGCAAACAGAAATGCAACTGAAATAAATGATATTGGCACCAAAGACTGCATGCACTCCCTACTGAGAAAAACCAAAGCGCTGAAGTTGACATCCCCACGTAGCACGGTTAGGATCAATTCCATTTCATTCAGGAAGTACATTGATATTCCAGTTCTCTTCAAAATGAGGAAAATTcagaattggaatttggtttactttacTTTCTCAATTGCCTGGAATACAAATAGAATTGACTTCAACCCTGCCATGTAGTCTAATGTACATGTTTTTAAGCAAGGCAGTTTCTCCCCTAAGCGCTATTATAAGTTGAAGAACGATAAATTAAACAGAAGTAGTGTTTTCAGTACAGCACAATACATTGTTATGAAAAGTGGTTGAGTATGAAAGTCTGTTCTAAACTGGAATGAAACAGTCCTGTTTCGATCACTTTAAGATGCAGTGCAAAAACGAAGCCATGTTGTGTAGTATGGGGACAGTGTCATGTAGGCTACATTCTGCCGTTTCTGGGTACACTTCTTCACATATTGATAGTGTACCACAGTAGGGCAAATGCTGCCTTGGAAAAAAATACTGCATTACATTCTTAGAACCTGGATGTGTAACACAACACAGCTTTTTCCAAATACAACTCATAGTAGGCATTCAAACATATTCAACATGCAAATTAAAGACACTCAAGTATATGAAGTATTCTTCCAATACACCCTCCACAAATAAATATAATGTAAatgttaaatacattttgatcCTGAACTTCTTCCTACCTCGTAAAGCTGCTTAGAGCATCACTGACCAACGGAAACATAAAATACACCATGAAAAATACTTGTCTTAAGGCACCAACAGATCAAAATCCAACATGGACAAATACTCTAAACTTGGAGCTCTTTTCTGAAGTTCACATTCAATAAAACTCTCAACAAATGTCTGTTTCTTGAAATTTGAATGGGatgcatgtgcaaatgaggtaaaatATTGTAATGATACCAACAGCTAGCTTTGACTAATACGATAGACTTTAGAGTGTAGTTCAAGAAAATGTTGATAGAAATTGTAATATTTCATCAGTTTATGTTCAGTAACGTTTAGTGGGGTTGTTATACAgaaccttcagaaagtattcacacccattgccTTTTCCACACCAaaaattgtgttacagcctgaatttaaactTGATTAAATTAAgatttgttttgtcactggccttatcacaataccccata
>TU611804
GAAGTGTGGCAGTCGAGTACACAGGATGGGACCAGAGCTGCCAACTACCCAACAGGGGCCATGTCGATGCCCTTTTGGATATCAGCGATGATACCTCATCCAAAGAGCAGGAGCCATTtgagtttctctgtctctccggATGGGAGGAAGCTATCCGGGGCTGGGGTAGAACTACTCCACTTGGCTGCCTGGTTCAGacccagaggagaggaaagagggtcAAGACTGGAGACACAGACCACCACTGCCACCTGTGTGTGGACCTCGTGAAGCTCTCGGACCCCCCTGACTCTGAATCCAGTTTAACCCACTCCCCTGAGTCCTTCTGGGACTCCACCCTGGACCCATGGGCGAAAACCTC
>TU611803
ACCCTTTATGAAGAGTTTATTATGAGCGTCTGCCGAATAGCATCAACACAAGAGGCAACCTTGATCGACCCATCTACACATTCAGGCAACTGAAATACAACAGATAAGGCTGCAAACAGAAATGCAACTGAAATAAATGATATTGGCACCAAAGACTGCATGCACTCCCTACTGAGAAAAACCAAAGCGCTGAAGTTGACATCCCCACGTAGCACGGTTAGGATCAATTCCATTTCATTCAGGAAGTACATTGATATTCCAGTTCTCTTCAAAATGAGGAAAATTcagaattggaatttggtttactttacTTTCTCAATTGCCTGGAATACAAATAGAATTGACTTCAACCCTGCCATGTAGTCTAATGTACATGTTTTTAAGCAAGGCAGTTTCTCCCCTAAGCGCTATTATAAGTTGAAGAACGATAAATTAAACAGAAGTAGTGTTTTCAGTACAGCACAATACATTGTTATGAAAAGTGGTTGAGTATGAAAGTCTGTTCTAAACTGGAATGAAACAGTCCTGTTTCGATCACTTTAAGATGCAGTGCAAAAACGAAGCCATGTTGTGTAGTATGGGGACAGTGTCATGTAGGCTACATTCTGCCGTTTCTGGGTACACTTCTTCACATATTGATAGTGTACCACAGTAGGGCAAATGCTGCCTTGGAAAAAAATACTGCATTACATTCTTAGAACCTGGATGTGTAACACAACACAGCTTTTTCCAAATACAACTCATAGTAGGCATTCAAACATATTCAACATGCAAATTAAAGACACTCAAGTATATGAAGTATTCTTCCAATACACCCTCCACAAATAAATATAATGTAAatgttaaatacattttgatcCTGAACTTCTTCCTACCTCGTAAAGCTGCTTAGAGCATCACTGACCAACGGAAACATAAAATACACCATGAAAAATACTTGTCTTAAGGCACCAACAGATC

Function

NR:

description
PREDICTED: uncharacterized protein C16orf46 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607495.2 False 3785 mRNA 0.44 3 70594747 70599188
TU611804 False 361 lncRNA 0.57 2 70595551 70596187
TU611803 True 960 lncRNA 0.38 1 70597852 70598811

Neighbor

gene id symbol gene type direction distance location
LOC110526485 fam92b coding upstream 36649 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 536684 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 556290 70036194 ~ 70039507 (+)
emc8 LOC106587369 coding upstream 565818 70026162 ~ 70028929 (+)
LOC118964926 NA coding upstream 837914 69739619 ~ 69756833 (+)
cmc2 cmc2 coding downstream 16288 70615476 ~ 70621510 (+)
LOC110526495 LOC106587464 coding downstream 1082413 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1362736 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 1411907 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 1474962 72074150 ~ 72098245 (+)
G540228 NA non-coding upstream 585 70593805 ~ 70594162 (+)
G540221 NA non-coding upstream 15846 70578620 ~ 70578901 (+)
G540211 NA non-coding upstream 20194 70554107 ~ 70574553 (+)
G540201 NA non-coding upstream 59534 70534488 ~ 70535213 (+)
G540191 NA non-coding upstream 87029 70507362 ~ 70507718 (+)
G540231 NA non-coding downstream 4207 70603395 ~ 70603644 (+)
G540233 NA non-coding downstream 6454 70605642 ~ 70605879 (+)
G540237 NA non-coding downstream 9167 70608355 ~ 70608611 (+)
G540239 NA non-coding downstream 24645 70623833 ~ 70627142 (+)
G540179 NA other upstream 110379 70481950 ~ 70484368 (+)
G539959 NA other upstream 575270 70015270 ~ 70019477 (+)
G539068 NA other upstream 1227105 69361641 ~ 69367642 (+)
G541903 NA other downstream 1200852 71800040 ~ 71804462 (+)
G542053 NA other downstream 1502192 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1551832 72151020 ~ 72152394 (+)
saa saa other downstream 2066272 72665460 ~ 72666872 (+)

Expression


Co-expression Network