LOC110526488 (LOC106562298)


Basic Information

Item Value
gene id LOC110526488
gene name LOC106562298
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70623828 ~ 70666213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607497.2
AGGAAAGCAAATTGGACTCATCATTTGGTGTCCCTCAACAGTAGACGTCTATGCATCAGCCATTTGGTTCATGGAGATCGGGCTACATCTACAGCGCAGACAGCGCAGGGGACTGGAGCGCATTTCGCACATGATTACGTTCATACGTTGACTAATTTCAGTCATCCACTCCGCACTGAATAAACAGCACCGCCCCAATCTCCCCTTGGTTGTTTGTTTTAAGTGAAGAGCGATCCATCGCAGAGCGCCGGGCTCGATTGACACTGTCTGATGATCTGCTACTGCGGCTGGCTCAGAATAACAAGGCTGCTTGCTAATATCCGTCTATCGGGGCTTTCGCCAAAACACCGAGCGAATAGGATCCAAAAAAGCCAACAAGGCAAGCAAGAACGCCGCGCCGCCGAAGTCCGCACCACAGGATGGCTTCGGGAGACCTTTACGAGGTGGAGCGGATCATGGACAAGCGACGCAACAAGAAGGGCAAGTGGGAGTACCTGATCCGGTGGAAGGGTTACGGCAGCAAGGAGGACACCTGGGAGCCCGAGCACCACCTGCTGCACTGTGAGGAGTTCATCAACGGCCTGCATCTGCACACCCAATACAAACAACCCAAACCCCCCAAGCTGCCCGCAGGGACGGCAGGGGGACCATGGAGGCCGGGAGGGCCCCCAGGGGGGGTTGGACCACACCTCCTATCCGCCCGTCCTCCTGCCCCAGACACCCCGAGAGCACGAGCAGAGGCACGTAAGAAGAAAAGGACTAGTGTTAGTCCAGGGGCCGGGGTTAATCCTGGGGCAGGAGTAAGGGAGGGCATGGGTTTGGGGGTTGGTACTGGAGCTTCTCAGAAGCAGAAGAAGGtgagcggaggaggaggaggaggaggagggaagcaTGTCTCTCCACACAGGATGACCAAAGCTATTCCGTACAAGGCTCCTCCGGGGGGACTGCAGTTTGTGCCCCCGGTAAGGGCCCCTCATAACGGCCTACAGAACGGAGAGATGGACCATGTCCTGTACAGGTCAGCAGCCAGGACACACAGACTGACCCATGACACGGAGAGGGTGATGGGGGGCGTGGAGACCCCCGGGACACCACTGGTCAATGAACTAGGCTCCACACTCTCCAACGGTGAGGTGAATCTGCACAGCTCTGTGAAAAGGAAGCTTGGAGAGGACAAAGGCTACGTGTTCCACAAGCGACTGAGGTACAACGTGCGGCAGAATGAGACCAACTGTCGATTCCGTGACATTGTCGTCAGGAAGGAGGAGGGCTTCACGCACGTGCTGCTCTCCAGCCAGACGTCTGACAACAACGCACTAACACCAGAGataatGAAGGAGGTGTGTCGGGCTCTGGGGAACGCAGCAGCTGATGACAGTAAGCTGTTGCTGCTCAGTGCTGTGGGGAGTATCTTCTGCAGTGGCCTGGACCCGTCCTACCTGATAGGACGCCTCTCCACAGACCGCAGGAAAGAGAGCAGCCGCATTGCTGACGCTGTACGagACTTTGTGCTGGCGTTTATCCACTTTAAGAAGCCCATCGTGGTGGCCATCAACGGGCCTGCCCTGGGCCTGGGGGCCGCTATCCTGCCTCTATGTGACGTGGTGTGGGCCAGTGAACGGGCCTGGTTCCAAACGCCCTGTGCCGCCCTCCGCCTCACCCCCTCTGGCTGCTCCTCCTACACCTTCCCCCAGATCCTGGGAGTGGCTCTGACCAATGAGATGCTGTTCTGCGGGAGGAAGCTCACGGCACAGGAAGCCTGCAGCCGGGGCCTGGTGTCACAGGTATTCTGGCCAACCACGTTCAACCAGGAAGTGATGCTGCGCGTGAAGGAGATGTCCACCTGCAGTGCTATGGTTCTGGAAGAGTCTAAATGCCTGGTGCGGAGCATCCTGAAGTCGGTTCTGGAGGAAGTGAATGAGAAAGAGTGTCAGATGCTCAAACAGCTGTGGTGCTCCACCAAGGGACTGGAGGCGCTCTTCAGCTACCTGCAGAACAAGGTGTATGATAACTGACCTCTCACCTCCACACAGCTGCAGAACTATCTATGGGCCACGAGATCTGGTCTTCAGTTACATACTGAGCAACATCCCTGAAGATATATGGCTTTGATCTTCAATTACCAACAGTCTTCTTTAACAACCAGCAGAGCGTAGTTTGCCAGTCTCCGAGGCCTTATCTCCTCTCGTCAACATCTGGGCCTGCAGAGCACCACAATCAATGTTTGTTTTACTTTGGTCATCCCTCAACGTCCCTGCCTGTAAGATGAACAAAGCATCAACTTCTGGAGAGGATTCATTCTGCATTCATAATGGCCTACTGGGAGTCCAGTGACCGTGAACAAGGCTCTTCAGGAAACGGATACACAGCAGCAGAATGTTGTGGGAGTGTGTGGAGGCAAAAGAGCTCATCTGATGGCTGTCATTGttcaattatttatttgaaaatgtatttaggTTTGATCCTAAATACaaaaaaagcataccatgtgtatatattttCTATTAGtctgctgtgtttttttttttttgtatcttgCTTTAGTCTTTCTGTTTTGAGGTGAAGTGTCCTCCTGGGCTCTGAGGTGTAGTGAAAATCAAAGCTATGCTTGAGGTCAAAGTGGAACATATATCTTCTCACCTTACAATGCAGTAACCCTGGCCAAAGAAGTAAATAATAATTGAAGTGAAACCTGTCCATTGAATTAGGTGTGGTGTAATAGGAGGGCCACTGGGGAAGAGTTAGAGGTAGGTCATGCCCAATGATACACACCCATAAGTGGGAAGTCACTGTGAATGGGCAGTGAACTCTTTCTGGATTTATATAGACCATTTTGCGATGCTCTTTTGGAAGTGTTTATTCAATTGCTTGTATTTGGTTTGTCAGTAAGGGTGTGTTTGACCTCTGATTGAATGTGAATATATATAGAAGGGCCCTCTTTGACCACGACCAGCACTCCCATAGAGAACCAGAGCTGTCTGATTCCATCTTTTCATTAGAATGTGGAGACTGTCGATAGATCAAAAGGAGACCTCTCCCTGGgaaagggaggaaagagagaatgagggtgAGACATATGTCATCGTTATTATATCAGCAGCAACAAGTGCAGCGTCATCATTATCATCAAGGTACATATATGACGTGTATTACAGTGTAAAGGTGTAGCGGGAGGGGTTTGCTTAACTACTCTTCTGTGTTGactaaccttgcctgagacctgaagacttctTTTAGCTCCCAGAGCTAATGCCcggcctttagctcagtgggctactGCAGTCTTGAATCGTGAAGACGACCAGGGTTTGATACCCCGTTGATTATATAGGCATGTATATTACATTGTGAAGAGTTTAGCTATGATATTTGGACAGATAATTATTTTGATATTACCTTGCAATCGGTTATTAGTGAGACATTGTGTATTTTTGTAACCACAGAAAGATGTTTTGTCCCAGAGTAATCACTGCACTTTTTGTCTGTTGGCTGTCTGTGTTGTGAAGATGCAGTAGTAGTGCAGCTGAAGCAGATAATACCTGCATGTGATAATGGCTTCAGGAAATGGGAAATGTATATCTACATATATTGTATGTATGGATATCTATTTTTGGTTTACCCAATAATGAAATGTAGTTTTGTGGAAATTGTTTTGTATCATTCAGGAAGTGGTGGGTTTTTGCAGTTGTATACATATATGCACCATGTAGGTGTTATATGGTGTAACTATATGCATGTACAATATTGTAGATACGTGTGTTGCCTGTCAAAATACTTTACATTTCAGGGTATGTTTTCTATTGCCATAGTAAGCAATGTTAGAAATCTTGCacaattattatttgtatttattttaagttAGTGCTCAAGTTCCCCTTGGGGCTGCAGTGCCATAATGTTTCCCTTTCCCCAGAGGCATCTCTTTCGCTCTTATCTTCTGTTCCAGATCCAAATTGCTTTTTTCCCTAGATCTGCCCTGTGTGATAGTGgtgacacaacaaacacacaccaaaaacATGGTTACATGTAGCATAATTATTTTTAAAGGCTGTTGATAACCACTTTATGCCAAACTTTGAAACATTTAAAGTAATATTGCTATTAACAGCTCTGACAAATCAAAGCTCTATCAATTTCTAATCAACCATTCCCAATTATATTTGAATAACACTTTCCCTGAATTTCCCTAATTGATGTATTATTTGTGTGTTGATCAGTATATTGCTAAAGTATAGTGTAAGATTAAATGTATATTAATATATTCAAGATTAGAGTTTTGCCTGTACCTCTCCCCAACCTGGTCTCAAGAGTATTTTGTCTTATTATGTACGTAAACCCatacactccatttagtatgctATGTTACttctgtatggtatgtattcatttgtggatgtccatcaaccgttcgtatgatatgttacgaatttgcaaaatgtacaaaatagtaCGATTTGCTAAACGTATATGTtccgaattctagctaggtggttaacattagctagctggctaacattagctgagGTTAGGGGTTAGTATTAAAgtttgggaagggttagctaacatgccaaGTAGTTGCAAACTAGCTAAAAAGTAGCAAGTAGAGGAAAAGttactaattagctaaaatgctaaacttggtcgtgatgagatttgaactcacaacctttagGTTGCTAGACGTTCATGTTATACACCAACCCATCCACCCCACACCAACTCATTTTTGCCTGAAGTAAACATCTGTCTTAtctaaccataccaaacgtaacatatcatacaaatttgtatctcagtttacatttactttgttatgtatagtctgagaccaggctgctcTCCCAGGACCCAAATAGAGTAACATTGTGTTTGAATGAATCATTTGAAGTAAAACCGTTATAATTCATTTGTTGAGGACTTATCCTTGAAAATGATGACCGGCCCTGTAAGCCATGTGTTTAGGTTTAGTTTGTAAACTCCTATCATCACCATATGATGTTTCTATGCATCTTCCAAGCATTTACAAAcctattacatgttgagtttctACTCCTTTCTCTCGTCTAAAATCACACCTCGGGGTGCCTTAGAAGCTGTATCTTTTGTCAGTAGGATGCTGTATCCATACGTTGTGAGAGTTTGGGGGTCGAGCTGCTTTGAATAAACTATGACATTAATTTAAA
>TU612275
TAATATATTCAAGATTAGAGTTTTGCCTGTACCTCTCCCCAACCTGGTCTCAAGAGTATTTTGTCTTATTATGTACGTAAACCCatacactccatttagtatgctATGTTACttctgtatggtatgtattcatttgtggatgtccatcaaccgttcgtatgatatgttacgaatttgcaaaatgtacaaaatagtaCGATTTGCTAAACGTATATGTtccgaattctagctaggtggttaacattagctagctggctaacattagctgagGTTAGGGGTTAGTATTAAAgtttgggaagggttagctaacatgccaaGTAGTTGCAAACTAGCTAAAAAGTAGCAAGTAGAGGAAAAGttactaattagctaaaatgctaaacttggtcgtgatgagatttgaactcacaacctttagGTTGCTAGACGTTCATGTTATACACCAACCCATCCACCCCACACCAACTCATTTTTGCCTGAAGTAAACATCTGTCTTAtctaaccataccaaacgtaacatatcatacaaatttgtatctcagtttacatttactttgttatgtatagtctgagaccaggctgctcTCCCAGGACCCAAATAGAGTAACATTGTGTTTGAATGAATCATTTGAAGTAAAACCGTTATAATTCATTTGTTGAGGACTTATCCTTGAAAATGATGACCGGCCCTGTAAGCCATGTGTTTAGGTTTAGTTTGTAAACTCCTATCATCACCATATGATGTTTCTATGCATCTTCCAAGCATTTACAAAcctattacatgttgagtttctACTCCTTTCTCTCGTCTAAAATCACACCTCGGGGTGCCTTAGAAGCTGTATCTTTTGTCAGTAGGATGCTGTATCCATACGTTGTGAGAGTTTGGGGGTCGAGCTGCTTTGAATAAACTATGACATTAATT
>TU612280
CGAATAGGATCCAAAAAAGCCAACAAGGCAAGCAAGAACGCCGCGCCGCCGAAGTCCGCACCACAGGATGGCTTCGGGAGACCTTTACGAGGTGGAGCGGATCATGGACAAGCGACGCAACAAGAAGGGCAAGTGGGAGTACCTGATCCGGTGGAAGGGTTACGGCAGCAAGGAGGACACCTGGGAGCCCGAGCACCACCTGCTGCACTGTGAGGAGTTCATCAACGGCCTGCATCTGCACACCCAATACAAACAACC

Function

NR:

description
chromodomain Y-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607497.2 False 5186 mRNA 0.46 7 70623828 70666213
TU612275 False 925 lncRNA 0.37 1 70623832 70624756
TU612280 True 258 TUCP 0.58 2 70650964 70665861

Neighbor

gene id symbol gene type direction distance location
LOC110526960 atmin coding downstream 10440 70600001 ~ 70613388 (-)
LOC110526959 LOC106587454 coding downstream 30347 70592558 ~ 70593481 (-)
LOC118964928 NA coding downstream 67416 70527096 ~ 70556412 (-)
gse1 LOC106587451 coding downstream 104823 70062547 ~ 70519005 (-)
LOC118964927 NA coding downstream 120412 70498546 ~ 70503416 (-)
mafa maf coding upstream 349834 71016047 ~ 71136889 (-)
LOC110506109 LOC106587443 coding upstream 562234 71228447 ~ 71230405 (-)
LOC110526491 LOC106587459 coding upstream 602947 71269160 ~ 71307013 (-)
syt9a LOC106587460 coding upstream 667953 71334166 ~ 71375579 (-)
LOC110526494 LOC106587461 coding upstream 748229 71414442 ~ 71535063 (-)
G540638 NA non-coding downstream 25045 70597862 ~ 70598783 (-)
G540673 NA non-coding downstream 29740 70593803 ~ 70594088 (-)
G540672 NA non-coding downstream 32637 70587094 ~ 70591191 (-)
G540664 NA non-coding downstream 46813 70576809 ~ 70577015 (-)
G540635 NA non-coding downstream 65826 70520285 ~ 70558002 (-)
G540727 NA non-coding upstream 46936 70713149 ~ 70713377 (-)
G540757 NA non-coding upstream 67208 70733421 ~ 70733689 (-)
G540769 NA non-coding upstream 77676 70743889 ~ 70744122 (-)
G540868 NA non-coding upstream 170766 70836979 ~ 70837403 (-)
G540877 NA non-coding upstream 183534 70849747 ~ 70850061 (-)
G540376 NA other downstream 516653 70103798 ~ 70107175 (-)
G539714 NA other downstream 933813 69688907 ~ 69690015 (-)
G539674 LOC106587381 other downstream 1007509 69615754 ~ 69616671 (-)
LOC110526462 NA other downstream 1334332 69272988 ~ 69289496 (-)
G539306 NA other downstream 1618163 69002743 ~ 69005665 (-)
G541798 NA other upstream 943318 71609531 ~ 71613840 (-)
G543091 NA other upstream 1934062 72600275 ~ 72721818 (-)
G543092 NA other upstream 1993243 72659456 ~ 72666713 (-)
G543224 LOC106587514 other upstream 2143564 72809777 ~ 72810172 (-)
G543313 LOC106587506 other upstream 2331315 72997528 ~ 73020000 (-)
LOC110526488 LOC106562298 other upstream 26208 70623828 ~ 70666213 (-)

Expression


Co-expression Network