LOC110526495 (LOC106587464)


Basic Information

Item Value
gene id LOC110526495
gene name LOC106587464
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71681601 ~ 71690360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607510.2
GTCAGCTGATTAGTCAGGATTCTTGGCGTGACACGATTGGATAGCTGGCGAGCTTGAGTTGTTTACTTTTTTTGCTAGTCATATTTCCTCTCTTCTTTCTAACTGTACACTGTCACAGTAGGCTTTTGTTATTTGTGAAACTGACACACTTCAAAACGGAATGAGTACTACCATTAGCACCCAACGAGGACAGGTATACATTGGGGAGTTGCCCCAAGACTTCCTGCGTATTACTCCCACCCAGCAGCAGCAACAAGTTCAGTTGGATGCCCAAGCAGCGCAGCAGTTGCAGTATGGGGGATCCCTGGGCACTGTAGGACGGCTTAGCATCACTGTAGTGCAGGCCAAGCTAGCTAAAAACTATGGTATGACACGCATGGACCCTTACTGCAGGGTCCGACTAGGGTATGCTGTTTATGAAACACCCACAGCCCATAATGGTGCCAAGAATCCACGATGGAACAAAGTTATCCAGTGCACTGTCCCACCTGGAGTAGACTCCTTCTACCTGGAGATCTTTGATGAGAGGGCATTCTCCATGGATGACAGAATTGCATGGACACACGTCACCATCCCGGAAGGCCTGagagagggcagtgtggttgaTGAGTGGTACAGCCTCAGTGGCAGACAAGGCGATGACAAGGAGGGCATGATCAACCTGGTCATGTCTTATGCTAACATGACAGCAGGTATGCATATGTCTCCACCCGTTGTCCTCATGCCCACAGTCTATCAGCAGGGGGTAGGATACATACCCATTGCAGGAGTGCCCACTGTATACAACCAGGGAATGGTGCCCATGGGTATGCCTGCAGCACCCACAGTCGCCCCACAAGAAGCTCCTTGTAGTGAGGAGGATCTTAAGGCACTGCAGGACATGTTCCCCAATCTGGACAGGGAAGTGATCCGCACTGTAATTGAGGCCCAGCAAGGTAACAAGGATGCCGCCATCAACACTCTGCTGCAGATGACAGAAGAGCTGTAACAGTGGAGCCACAAATAGAGCCACTGTGGCGGCCAGAACATTGCCCATTCACAGCAACAGCACCCTGCACAGTTTGTAAATATGCACTCAGGCCTGCGAGCTCTCAACTGTCACTCACACTAAATAAAATCCAGCAGTTTTCAACCATAA

Function

NR:

description
toll-interacting protein-like

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0006954 inflammatory response biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05402 TOLLIP; toll-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607510.2 True 1138 mRNA 0.50 6 71681601 71690360

Neighbor

gene id symbol gene type direction distance location
cmc2 cmc2 coding upstream 1060091 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1082413 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1123503 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1623538 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 1643144 70036194 ~ 70039507 (+)
LOC118964930 NA coding downstream 271564 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 320735 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 383790 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 427378 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 466830 72157190 ~ 72181309 (+)
G541821 NA non-coding upstream 50722 71630488 ~ 71630879 (+)
G541800 NA non-coding upstream 65384 71615938 ~ 71616217 (+)
G541794 NA non-coding upstream 67905 71609347 ~ 71613696 (+)
G541788 NA non-coding upstream 76774 71604295 ~ 71604827 (+)
G541785 NA non-coding upstream 79882 71601427 ~ 71601719 (+)
G541892 NA non-coding downstream 423 71690783 ~ 71692049 (+)
G541894 NA non-coding downstream 1800 71692160 ~ 71692463 (+)
G541904 NA non-coding downstream 23540 71713900 ~ 71807250 (+)
G541913 NA non-coding downstream 44505 71734865 ~ 71943278 (+)
G541914 NA non-coding downstream 46924 71737284 ~ 71740884 (+)
G540179 NA other upstream 1197233 70481950 ~ 70484368 (+)
G539959 NA other upstream 1662124 70015270 ~ 70019477 (+)
G541903 NA other downstream 109680 71800040 ~ 71804462 (+)
G542053 NA other downstream 411020 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 460660 72151020 ~ 72152394 (+)
saa saa other downstream 975100 72665460 ~ 72666872 (+)
G542890 NA other downstream 1075321 72765681 ~ 72766851 (+)

Expression


Co-expression Network