LOC118964930


Basic Information

Item Value
gene id LOC118964930
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71961924 ~ 71967802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052233.1
ATGTGTTAAACGACCATTGTAAAAAATACAATAGGTGTTAAGAGGTATTAAATAAGGCACGGGTAGTATATAACGGATGCGAAGTAGGAAGAAAGAAAATTCGGCTTCAACGTGAAAGGGCAAACTGGATAATGGAGGACAACATTACCCAGTAAacaggataaataaaataaacgaTTCAGGGAGGCAATTAGGAATTGGAACATTCACATAAAACCATAAAAAGAAACTCAATTTACCAGCGTTCTGATGTCAACATTCTATCATCAGAAAATACATTACGATGGGGGACAGATATGATTCTGCTTGCCCTCGCAGACGTGCGAGTGGTTAGCAGAGCTATAGAGAATATCTCAGCGTAAGAAAATAGCTCCCTGTTTTAGATGTGGAGCTAATTGGTATGGGAAGAATGAGTGTAAGATGATGCTGGGACttagtgcggtagcagagaatgCCGCTATACAGGAGTTTGCATCTTTTTCAAAAGAGCAACAACTAATCGTTTTTGAGGTTAGTAAGAATGGAATATTCACCAAGCGGTGTATAGTCTCTGATCGATCAATAAGTGGTTCATAGAGAGTACAGTTTATATGTGATAAAATACGTACTAGATCACGTTTTACCTAACCTCTAGTAAAGTACCGATGGGATTTACTAATAGTCCCACGTGGTATCATTTTGCATTGAAACAATAGTTTCAGTAGTGATAAAATACGTGGAGAATTTGTTATTAGCGTCAAAAGACGGAAAATAAACGTATATGAGAAAACACCACCTAAGTAAAAGTAATTGGAGAAAAGCAAAATGTAATATATTGGTGTTTCAATTTCTAAGGGTAAGATACAGATAACCAACCAGGAAGAAACTATGCGTTCTGTGCATGGCTAAACTTTTCTCGCATGTTCAGAAAAACGTAAGGGGTTTTCAGTTTTGTTAGACATTCTATACCGTCATTCTCTGAAACTGCTAAGACGCTTATAGAATGAAATCAATATCTAAGCAATACTATTGGCTTGCTGATTAAAAGGTAACATTGTGAATATTAACGAAATGTACATTTCTTTTCCAGAAAAAAGGGGTTTCATTTTCTCTGGTCAAAATGTCATTGGAGACTGCGGTACTGAGGAAAGCAGTTAGAGATATTCGGCCACTTTAAAAGTAAAAGTATCTGGATAAGGCTATAACTGGAGTTCCGGATAAGTGAGGCCAGTTCCTGTGTGTTCTTGACCTATGGTACACTAGTAGGTATACCTTATACCGTGAATGAATATGCAATAGTGGATTTATTTTGGAAGGGTTTTtttcaattcagtttcaaatTGGGTATGCAGAACGATGgaaatgtttttgaaaatgtatttaagttGTTTCTAATGAAAAGGGAGTGGAAACATTTTTAATGGTGTCAAATGCCCTGAATCCTAAGAATTTACCGTGAAGACTGATCAACTTCACTAGAAATTGTTGGAACAGGTGGGATTTAATTATAAAATGATTGAGAAACACCAGTCTCTATTCAAAAAGTGTACAATCACTTTGAAATTCTATTATTTCCTTGGGAAAATGATGAATAGTTGTAATCTTAAATTGACTAGTTACTCAAATAGGTTTATTTTTTGATTAAACACGGGTTCATAGGAGAAATTATCAGTTCCCTGGGGTTATGGTCTTTGGGTAAATACAAATGTGCTTTGTTCATTCTGCATATAAAAGGGAAATATATGTTAACAAGGGATAACAGTTACTCCAAATGGTTTATTGGAGTGGGGGTCTCTGCGAGGGTTATGTTGATAACTACATAATCTGTAACTCGTCTGAGAGATCGCCAGTAGAATAAGGTGACGTCAGAATGCTTTAATGCATTGGAGAGATTATCACCACAACAAGTGTGTGTGAAACTCAAACCTACCCTATGGCTGAATAGTGAGGGACAACTGTGTCTGATGACCTGTGAACTGTGTCTAAAATAGACATGCTGGAATGATATGTGCTGGGAGAAGAAAGACTAAAGGGGATTGGGGTAATGACCTTTTATTACCAGGCCACTcatgacagaaacagagacaatgGGGCGCATTGGAAAatagatattactggtactaAAAGTTTTTAGTATAATGTTAATGATGTGTATTGAATTGAGAAGGTCGCATTTGAGTTAAAGTAAGCACTAAGGACTGTTATCCTGAATATTGGGTTGGACAATTTATAAACAACATTTAGTTATGATTTGGATATAGGACTGTTTAAATTTAGTAGGCCTAGGGAAGCTCTGGAAACTAATCCTGAGACAGGGTGATTGACAGAATTTACAGAATATTAGATTAAAGGTTTTTGTTTCTTTTGTTTTACAAAGTCATTGTAATTGTAATTATATAAGTAATTGAATAAAAGGTATAGTCTGTTGTGCGATAACACCCAAGGATGAAGAAGAAAGAGACCAACATAACATGGGCATAGAACAAAACGGATGGACGTTTTCCCCAGGTTTAATTACATTACAAATAGTGGTAATTTATTGCAAATATGCAGTTATTATAATTTAGTTACTATTTTTTCTTGTTTGgtcaatttatttttgttttgaggAAAATAAGTGTGTATATTGTTCCTGAGGAGGGACTGATATAAATTGACTAAAAATGATTTGAGAATGTTTAAGTATGTATCAAACTATGGAAGGAAATTAGGAGTAGTGACttatgtgttatgggttagaaaaACTGTAACTACATTGGGGGCTCATACATGAAGGTTATGGTAGCGGAGGGGTGTTATTTCTAGAAACAATGTATATTAATAGACGAGATAACTCACAGAAAAGGAAGGACAGTTGGTCTTGTAAAAATATAGGGATATAAAATATAGGGACAATTCTAAAAGTAAATAGAACATTACACATACCTAGATTATGGTAAAAGTAATAAGTAGTGGCATTTTGAACACTAGAGCAAAAGTTTAAGAAACTTATGATTTAGTTTTGTTAGGATTGGATATTCTTCCAACTGGAAGACACTTGACTGATTACATGTTATTCTTACAGCAATTGCTGTAGGGACCATAATTTGGCTATCATTATGAATATTTTTGTGGCAGGAGGCCAGGTATttgagacagaatgtttacatagggctgttatTTAAAAATTAAGATTTAGTGATCTTGCTATAAGAAGAAAGGAAATAACccatgtgttagtgtgtatgtcctCAGGAAAAAAACAGCACATAAGAGGCCAGATGGAAGGGCATGGGCTGAATTCTGAAGACTGAGTGTACATCAAGATACACCAGTTGAAATAGAGcaagaaaggaagaggagagaaggacccTACCGGGTGGCTGTAGCAACAAACACGGCCGTCCAAGTGAAAGGAAGCAAGATGTGGTACCATCTGAATCACTGCACCCGAGTCGCAACAGAAAGAAGGACACAACCATATAGAGATGAGTACACAGAGGATGCTAATTCACCAGGAGGGAGCCCGGAGGGAGCAGGAACAGCGAAAGCAATCGAGACGCCAGGGAGGAGCCAAGAGAACAGCAGACCAAGTGAAAGCCAAAATACGACAGGTGCATTGCCTAATGCACCCAGAAGAAGACGAAGGAGAGACAACACTGGAGAAAGAACCTGTGAACAACCAGAATTCACTCCTGTGGGGACAGAGAGTCCAGGGATGGGAGGGAGTAACACGCCTGCTACTCTTGATGACATACCTGTTGTGGCAGACCTCTTTGACAGAAGCCCTCCACAGTGGGACCCCGAAGTACCACCTGCAGAATGGGAACATCTCTTCCCTAAACTTGACATCCTTCCAGATGGAAGTCCAGTCAGGCCTGAGGAGGGAGTCtcaggggaggaaagaggaggagaggcctcacaAGGAACAGAAGGAGACCCCACAAAGAGGAGGAAAAGTTCTGCAAGCTGAAAAAATGGGTATTTCCCCACAATTGACTTTTCAGCTCTTAAATGGTCTCCTTAACAGACACTTGAAGTTAGAACCACGGAAAAACAATGACATTGACATAACAGAAGTAACAGTGAACGCTAGTATAGAAACAACAGACTCACGCACAATCAAGATGTAGGGtggaaacaggaagagaggaaccaGCCAAACAATTTAAAAAGACTGACAAGGTTAGAATCTCTGTTCCACAACAAACACATAACTGAAACAGGAGAACAGAAGACAATCTCAATCAAAAGGATCAAACCCTTACCGGAGATTGCACTCTGTGGATGGACACATCATCAAACGAAGGGAGAAGTCATTTGGGACCCAAAAGGATGTGACCTGACGTTAACCAAAGAAGTAGACGAGTGGGTGCTCATCATGAACAAGATTGAACCACTGGAAGGTCGTATGCAGAAAATCGTGCACGAGCGGGTCTGGTCCCGTTATTTAAGACCTGGCCACTGAATTGAGGTTAAAGACCAGGCCGGTGTACACCCCAGACCGACAGGGATGGTGACTAGATCCAACGAACATTGCTTTTCCCAGTCGGCGACAAGG
>TU613753
TAATTGAATAAAAGGTATAGTCTGTTGTGCGATAACACCCAAGGATGAAGAAGAAAGAGACCAACATAACATGGGCATAGAACAAAACGGATGGACGTTTTCCCCAGGTTTAATTACATTACAAATAGTGGTAATTTATTGCAAATATGCAGTTATTATAATTTAGTTACTATTTTTTCTTGTTTGgtcaatttatttttgttttgaggAAAATAAGTGTGTATATTGTTCCTGAGGAGGGACTGATATAAATTGACTAAAAATGATTTGAGAATGTTTAAGTATGTATCAAACTATGGAAGGAAATTAGGAGTAGTGACttatgtgttatgggttagaaaaACTGTAACTACATTGGGGGCTCATACATGAAGGTTATGGTAGCGGAGGGGTGTTATTTCTAGAAACAATGTATATTAATAGACGAGATAACTCACAGAAAAGGAAGGACAGTTGGTCTTGTAAAAATATAGGGATATAAAATATAGGGACAATTCTAAAAGTAAATAGAACATTACACATACCTAGATTATGGTAAAAGTAATAAGTAGTGGCATTTTGAACACTAGAGCAAAAGTTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052233.1 False 4519 mRNA 0.39 3 71961924 71967802
TU613753 True 583 lncRNA 0.32 1 71964304 71964886

Neighbor

gene id symbol gene type direction distance location
LOC110526495 LOC106587464 coding upstream 271564 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1340414 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1362736 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1403826 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1903861 70049150 ~ 70058063 (+)
LOC110526507 LOC106587468 coding downstream 43293 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 106348 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 149936 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 189388 72157190 ~ 72181309 (+)
LOC110526515 LOC106587477 coding downstream 217270 72185072 ~ 72207042 (+)
G541993 NA non-coding upstream 10890 71950694 ~ 71951034 (+)
G541913 NA non-coding upstream 18646 71734865 ~ 71943278 (+)
G541931 NA non-coding upstream 22148 71824463 ~ 71939776 (+)
G541936 NA non-coding upstream 122146 71831761 ~ 71839778 (+)
G541934 NA non-coding upstream 131383 71829400 ~ 71830541 (+)
G542005 NA non-coding downstream 780 71968582 ~ 71968789 (+)
G542006 NA non-coding downstream 2595 71970397 ~ 71970902 (+)
G542009 NA non-coding downstream 7394 71975196 ~ 71975518 (+)
G542010 NA non-coding downstream 8814 71976616 ~ 71976941 (+)
G542011 NA non-coding downstream 9412 71977214 ~ 71977481 (+)
G541903 NA other upstream 157462 71800040 ~ 71804462 (+)
G540179 NA other upstream 1477556 70481950 ~ 70484368 (+)
LOC110525047 psf2 other upstream 1922417 70036194 ~ 70039507 (+)
G542053 NA other downstream 133578 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 183218 72151020 ~ 72152394 (+)
saa saa other downstream 697658 72665460 ~ 72666872 (+)
G542890 NA other downstream 797879 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 1070819 73037953 ~ 73182742 (+)

Expression


Co-expression Network