LOC110526507 (LOC106587468)


Basic Information

Item Value
gene id LOC110526507
gene name LOC106587468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72011095 ~ 72021875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607530.2
AGAGGTATATAGGTATATCATAGCAGATACAGCAGCAGTCAGTGGACTGCCTTACTTATTCTCACTAAAACATATCAATCAAAGGACTTTGACATGTATTCAAACAAGATTGACGGGCCGCGCAGAGGAAGGTCTTTCGACTCTATGAGTTCTTCATTGCACACTTGTTACGAGGAAAAGCAACTGAATAATGAGATGAAAAAGTGTACCTTCAGCAAGATCGACGAGAACAAGGACAACAAGAGTTCATCTTGGGAGAATGGTCGCTCTTTAGAAAAGGGTCGCACGGCCATCGCCTTTTCCCTCAAGAATGAAGTTGGCGGGCTCGTTAAGGCGCTAAAACTTTTTCAAGAGAACCACGTCAACCTTGTTCACATCGAGTCCCGAAAATCGAGGCGGCGCGGCTCAGAATTTGAGATCTTTGTTGACTGTGACAGTGGCCACGAGCAACTCAAGGAGCTCACTGAGCTGCTACGAAAGCACGCCGCCAACGTAGTTGATATGGACCATGATCAACCTGACAATTCCAGCCTGCCTGAAGAAGACACTGAAGATATTCCCTGGTTCCCAAAGAAAATCTCAGACCTGGACATGTGTGCTAACCGTGTCTTGATGTATGGCTTAGACCTGGATGCTGATCACCCAGGCTTCAAGGACAACGTCTACCGCAAAAGAAGGAAACACTTTGCTGATCTTGCCATGAGCTACAAACAtGGGGATCCAATTCCGCATATCGAGTTcacagaggaggaggtgaagaCCTGGGGTGTGGTTTATCGGGAGCTAAATAAGCTGTATCCAACCCATGCTTGCCGGGAGTACCTGAAGAACCTGCCACTGCTCTCCAAGCACTGTGACTGCAGGGAGGACAACATCCCCCAGCTGGAAGATGTGTCACACTTCCTCAGAGaGCGCACAGGCTTTATCATTCGGCCCGTGGCAGGTTACCTCTCCCCACGAGACTTTCTGGCAGGTTTGGCTTTCCGGGTTTTCCACTGCACTCAGTATGTTCGCCACAGCTCTGACCCTCTCTACACACCTGAGCCAGACACATGTCATGAGCTGTTGGGTCATGTCCCTCTGCTGGCAGAGCCTAGTTTTGCCCAGTTCTCCCAGGAGATAGGTCTGGCTTCTCTGGGGGCCTCAGATGAGTCTGTCCAGACGCTGGCCACCTGTTACTTTTTCACAGTAGAGTTTGGCCTGTGTAAACAGGAGGGAAAGATGAGAGCCTACGGCGCAGGACTTCTCTCCTCTATCAGTGAGCTGAAGCATGCACTCTCCGACAATGCAAAGATCATGCCCTTTGACCCCAAGGTCACCTGCAAGCAGGAGTGCATTATCACGACATTCCAAGACGTCTACTTTGTGTCAGAGAGCTTTGAAGAGGCCAAAGTCAAGATGAGGGAGTTTGCCAAAACCATCAAGCGTCCGTTTACAGTGAGGTACAACCCGTACACCCACAGTGTGGACGTGCTGAAGGACACATCCAGTATCAACAGCATGGTGGAGGATCTGAGACATGAACTAGACATCGTGGCCGACGCCCTACAGCGCCTTAACAAACACTATGCTGTCTGACCAGCCTGCCTGGCCCTCATACTTGcaagggttgcaaaattctgctAACTTTCCCAACATTTCCAGGTAGTCCAGAAATCCCGGTTGGACAGAATCAGGAGGAAACAAGCAAGAAATATGATATCCTCCAACCAGTATTTTTGGAAAACATGGgaattttcagaaatgttgcaACCATATACCTGACACAGCCCTGTACAGCTGTCTGTAGTTGTCTACCACCTGATCCTTACCAAGCAGCTCGCTGCTTTAATCCTACTCACTGATATCCCCAAACAGCCTTTTACCTACAAAATAAATAACTCTTAaaattcaaatgttatattaaCTTTATTAAATTATTAACCAGTAGTTTACTTTAAAAGTCAATACATTTTTGGGTTTGTCATGTGAATAATAATATTGACTAAGGATGATTAGAATGTGACCGAAACGGACCTTTCCTTGGCTCTTGCTTATAATTACTGATATTCTCTTGTTTTTTATATGCAGTATTTATTTTCTTTTGAAGGTTCTATCTTAATGCAACAGTCGTCttatatatattgtattgtactCTATTGGCATGAACCGTTTCAATAAAGTTGTGAATGTGCTAGTGTGGATGTAAAGTTACATGCTTGCGTGTATAGTGAGTGACAGTCTATACATGTATTATCACATTGCACAAAGCATAAGGATGTGGTAGTAttatatgattgtgtgtgtgtgtgtgtgcgtgtaccttATCGAccttctgctgctactactgttgaccTCCAGTTGTCTATTTATCATAAGATGTTCAAGGAAGGAATTTATGTGCATGTATCAGTGTTTGGAAGATGACATGAATGTACTTCTATTGAAAATCTTTAATTTGTGTAAAAAGATCCCTGGTAAACCAATCCTTGCATTGGTAAGTGGTTGTCTGCATTCTGGGCTTTGAGCTATGGGGAAATATTTACAGTAGTTTCTTTGTTCTGTTTTTCTCTCATTAAATGTACTCCATGTTCACACACTGTGTTATACTATGTGCTATGATTGCTAATAATTACTCATCATTATCATTAACATTTCCTTAGAGAACACATAAAAAGCTAGCCACATCCAGGAGgatatatataaatgcaacatgtttcatgagctgaaataaaatatcccataaatgttccatacacacaaa

Function

NR:

description
tryptophan 5-hydroxylase 1-like

GO:

id name namespace
GO:0042427 serotonin biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0004510 tryptophan 5-monooxygenase activity molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
K00502 TPH1_2; tryptophan 5-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607530.2 True 2743 mRNA 0.44 11 72011095 72021875

Neighbor

gene id symbol gene type direction distance location
LOC118964930 NA coding upstream 43293 71961924 ~ 71967802 (+)
LOC110526495 LOC106587464 coding upstream 320735 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1389585 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1411907 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1452997 70551763 ~ 70558098 (+)
LOC110526509 LOC106563533 coding downstream 52275 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 95863 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 135315 72157190 ~ 72181309 (+)
LOC110526515 LOC106587477 coding downstream 163197 72185072 ~ 72207042 (+)
LOC110526517 LOC106587478 coding downstream 199473 72221348 ~ 72244464 (+)
G542022 NA non-coding upstream 8876 72001916 ~ 72002219 (+)
G542021 NA non-coding upstream 9874 72001016 ~ 72001221 (+)
G542011 NA non-coding upstream 33614 71977214 ~ 71977481 (+)
G542010 NA non-coding upstream 34154 71976616 ~ 71976941 (+)
G542009 NA non-coding upstream 35577 71975196 ~ 71975518 (+)
G542092 NA non-coding downstream 119641 72141516 ~ 72142559 (+)
G542137 NA non-coding downstream 252441 72274316 ~ 72292811 (+)
G542162 NA non-coding downstream 274869 72296744 ~ 72296989 (+)
G542131 LOC106587483 non-coding downstream 320037 72341912 ~ 72343982 (+)
G542179 NA non-coding downstream 323062 72344937 ~ 72345730 (+)
G541903 NA other upstream 206633 71800040 ~ 71804462 (+)
G540179 NA other upstream 1526727 70481950 ~ 70484368 (+)
LOC110525047 psf2 other upstream 1971588 70036194 ~ 70039507 (+)
G542053 NA other downstream 79505 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 129145 72151020 ~ 72152394 (+)
saa saa other downstream 643585 72665460 ~ 72666872 (+)
G542890 NA other downstream 743806 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 1016746 73037953 ~ 73182742 (+)

Expression


Co-expression Network