LOC110526509 (LOC106563533)


Basic Information

Item Value
gene id LOC110526509
gene name LOC106563533
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72074150 ~ 72098245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607535.2
GTGAAAGGATTGCGTATCCTACATATCTTGTTGTGTAGCAGTCTGAGTCTCTTCCACCTAGTTTTTAAGGGGCGGGTAGTATTTGGGTGTTGCCGTCGACCTCGACAAAGAGTCCAGTGGCAAAAAAAATCGGATTATTTTCATTCAAAAACCGCCTGGGCTTGTGTCTCTCACCACCgaaagggatctgaatacttcaACTATGGGAGTCGAAGGCTGCACTAAATGTATCAAATACATGCTTTTCTTCTTCAACTTCATCTTCTGGCTCGCAGGAGGTGTGGTCCTGGGCGTGGCTCTGTGGCTTCGACATGACGGCCACACCAGCAGCCTGCTAGAGTTGAAGTTTGACGGCCATCAAGCACCAACCACCTTCTTAAACAGTGTTCACATCCTGATCGCTGTTGGCGCAGTGATGATGGTTGTCGGGTTCCTCGGCTGCTATGGTGCCATTCAAGAGTCTCAGTGTCTTCTTGGAACATTCTTTGCCTGCTTGGTGATCCTGTTCGCTTGTGAGGTGGCAGCTGGAATCTTTGGATTCATGCACAAAGATTCGATTTCCAAAGAGCTGATTACCTTCTATGACAATGTGTACGAGAACTCTGTAGCAACCACTTTAACAGACCAGGACAAGAAACAGGCTGCCACTGCTGTGCTGAAGGCCTTCCATGAGACGTTGGAATGCTGTGGTAGGGGCATCAGCAACCCGTTCACTACGTTAATCACCCAAGGTTTAACGGACATCTGCCCCAAGTCAGTCTCTGCTTCCACTACAGACTGTCATGGAAAAATCAGGGAGCTCTTTAACGAGAAGGTTTACCTGATTGGCATCGCTGCCCTGATAGTTGCTATTATTATGATCTTTGAGATGACCTTTAGTATGGTCCTGTGCTGTGGGATCCGCAACAGCCCGGTGTACTAAAGTCCAGAGGAAAGAAGCAAGGGCTAGTGACCTCTGGAGATACTAGCCAATGACTGAAGGAAAATATTTATCTTCCTTTTTTGTTTTTATAGCCTGTCACTTCCTCAAATAGTTGCTTGCCAATTTTGCCAGTTGTACAAGATCAAAAATGCATCTTCTCACACAGTTTTTGATAATGCAGTACCAACTATTCTTGTCTGTCACCGATCGCTGTTCAGTATTTTGACTAATGTTAGTCTGTACAAAATGTTGAGGTTTACATTGGCATGgcatttaaacacacacacacacacacacacacacacacaattacagaTCCTGGAATTATCTTGTTTTAATTGTAAAGTATTGCTACTTTGCTGGAGGAGTCCAAAACATTGTACTCTGTTGATTTATCaatcttttttcaaatgtatatgtataaactgtatatATTTGCAGTGCTTTATGACTGGCAAGCATGGATATTGTATTGAATCCCTTCTCCCCACAAGTTTCTGCACTCACTGCTTGTCTGCCTGAGTTTTCTCCATAGACAACAACCACTAAGAAACAGTGAATGGATACTATTGATTTGTCTGTTCCATCTAAAACAAAGATAATAGAGGTGATAGTTTCCCCTGTGCTTTTATAACACCTACCAATCCAAGCCATAAAGAGACCCCATGCCTCCGAGCCTTATGAGTGGAATGTCCCATCCTCCCCAACAACACCTTGTTCCTGTAAAACTACATTGAATGTCCTGTCCTTAACCTATTGCTGTGTACTATGCATACCTACAGAAGCCTCACCTCCTAGGCTGGCGCAGCGGACAAACGCAGTGCTGAGGCGCCACTACAGCATGGGGTTTGATCCCAgacacaaccggccgtgaccgggagccCAATAGGAtggcgcgcaattggcccagtgcCGTCTGGGGTAGGGGAAGATTTGGCTGGTGGGGCTTTCCTTGGCTCATCTTGCTATAGCGACTCCTTGTGACAGGTCTGGACGCCTGTAAGCTGACTCCAATCATCAGTTGAACAgtatttcctctgacacattggtgcagcagACATCTGGGTTAAGAGAGCAGTGTAATAAGAAGTAGGctggtcatgtttcggaggacgcatgactcaaccttcaCATCTCCCGAGCCCGTTGCAGAGATGAGCCAAGGGACCTAATACGGGGTAAAAAGAAATACGCTGGACCTGGTTAGTACTTGGtcgggagaccgcctgggaataccaggtgccataaacgcaaaaaaatatttaagaaaaacaaaaaaaagtcacCTTCAGCCATTCATACAAATCTAGTTTATTTTCAAATAATCATTTTTATGCCTGCTTGTTATACTGACAGTCAAACATCTTATTATGCTGGGACATGCCGGACAATGTTGTATCTGTGCTGTATGAcgatactgtataataccactgACCATACAGTTGTGagaggttgtgtttgtgtgtcaggaaGTCAAATACTAGCCATGTCAACAAGTCAAGTCCACGACCAACCCACCACTAGGGGGCAGACCTGTTGTGAAGCTTCATGGTATTCCATTGCTATGGTTCCAAAGCCAGGGGGAGCTCTTTTCATACATTCTTGCTCCACTTTGACTTTGGTTGCCTGCTCAACTGCAAAGCACTTCTTACTGGTTCCATTTCGATCTTCAGCTTCCCCATTTCGATCTTCAGAGTTCACAGATTTGAATCTGATCCATTAGAGGGTGAGGTGGAGCTATCACCCTATTATCTACACCCATCCAGTCCTTTCAGATCTGTTAACACGGAAGGGGTATGGGCTAGGGACTGAAATGGAACCAGGCCCTTAACATTCACCTATATACACACATAAGCACTTAAACACTCACACATACTCACTCCATCATTTGTGTAGTCCTACATAATAGACTGTATGGCTTTCTAAGCCAACCAAAACCTTGTCTTGTTAACACATAATGCCTATGCTGATATATGGTTAAGTGTCTTGTATCATGTACAGCTATATATTATTGTACTAATGACCATGTAAAGACAATGTAGCTATGCCTTTCATTGTGATATTTTGTCTGGTACGTTGTCAAAAGAAAAATGGGTGTCGGCTTCAGTGGCAGTGTGCTGTACTGAGAAATCAATTGAGTTACTAATGGTTGGGAAGATTAGCAACATGGCTGTATATGCTGTACAACACAAAGGTGTACAACACAAAGGTGAAAGAACAATGCCAGCAAAAGAGTGTCTCTTTTTAGTATCTATGTCACTGCCCTACTGTAAAAACACTACACAATGTAGTGACTGAGACTGAGCCCACTGCCACTCAAATCTGTGCCCTTTCTCCTGTTTTAGATTTTGGTTTTGTTGCCCAAGTATTAAGggattaaatgtattttacaagTAA

Function

NR:

description
CD81 antigen-like

GO: NA

KEGG:

id description
K06508 CD81, TAPA1, TSPAN28; CD81 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607535.2 True 3319 mRNA 0.44 8 72074150 72098245

Neighbor

gene id symbol gene type direction distance location
LOC110526507 LOC106587468 coding upstream 52275 72011095 ~ 72021875 (+)
LOC118964930 NA coding upstream 106348 71961924 ~ 71967802 (+)
LOC110526495 LOC106587464 coding upstream 383790 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1452640 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1474962 70594747 ~ 70599188 (+)
LOC110526510 pkp3 coding downstream 19493 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 58945 72157190 ~ 72181309 (+)
LOC110526515 LOC106587477 coding downstream 86827 72185072 ~ 72207042 (+)
LOC110526517 LOC106587478 coding downstream 123103 72221348 ~ 72244464 (+)
LOC100136249 LOC100136249 coding downstream 188786 72287031 ~ 72294897 (+)
G542022 NA non-coding upstream 71931 72001916 ~ 72002219 (+)
G542021 NA non-coding upstream 72929 72001016 ~ 72001221 (+)
G542011 NA non-coding upstream 96669 71977214 ~ 71977481 (+)
G542010 NA non-coding upstream 97209 71976616 ~ 71976941 (+)
G542009 NA non-coding upstream 98632 71975196 ~ 71975518 (+)
G542092 NA non-coding downstream 43271 72141516 ~ 72142559 (+)
G542137 NA non-coding downstream 176071 72274316 ~ 72292811 (+)
G542162 NA non-coding downstream 198499 72296744 ~ 72296989 (+)
G542131 LOC106587483 non-coding downstream 243667 72341912 ~ 72343982 (+)
G542179 NA non-coding downstream 246692 72344937 ~ 72345730 (+)
G541903 NA other upstream 269688 71800040 ~ 71804462 (+)
LOC110526485 fam92b other upstream 1520230 70551763 ~ 70558098 (+)
G540179 NA other upstream 1589782 70481950 ~ 70484368 (+)
LOC110525047 psf2 other upstream 2034643 70036194 ~ 70039507 (+)
G542053 NA other downstream 3135 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 52775 72151020 ~ 72152394 (+)
saa saa other downstream 567215 72665460 ~ 72666872 (+)
G542890 NA other downstream 667436 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 940376 73037953 ~ 73182742 (+)

Expression


Co-expression Network