LOC110526510 (pkp3)


Basic Information

Item Value
gene id LOC110526510
gene name pkp3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72117738 ~ 72135463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607537.2
GCACTCCTTAGTCTAAAACCACCACCTCCCTAAAAGAGAACAGACGGACTAGAGCTAACTGTAGGTAGAAGGAATACGGAAAGAagacagaaaatatttaaaacacTCTGGCAAAGGCTCCTTAAACCTATTATGATGCCCAACACCGCGGTCACCACTTATGCAGTCCCGTCCGATGTGCAGTTGGGACCGAGGGGTTCCATAATGGACGAGGTGGAAAGGGCTAAGAGGGTTCAACAACAAGTCAATTTGCGCCTCGCCGAAAAGAAGTATTCTACCCTCACACGGCTGAACTGCTCGAACTGCATTTCCCCAGACCATGGTGGCACAATGAGATTTAACACGTACAACCCCGGATTCAGCTCTAAGTCAATGGTGTATAACACAGGGAGCAGGACCATGAAGATGCCCCCGGTATCCCAGCAGTACTTGGGAGGTGGGTACTCGTCTTGCTCAGCGGTGGAGTTAGGACCTAGATATAGAATCAGCCAGCCTCCAGTCAACATTGGCTACCTCCACCATGACGACATCCAGCTGGGTGGCTACCAGACCAGCCGGACGAGGACCGCCAGGTCCAGATCAGTTTGTCAGGTGTCTGGCGGGGGCAGTGGCAGTGTGTGCGGAGGCTGGGGTCAGTACCAGAACTCCCTGCACAGTTTAGACATGCCCACCGCGGTCAACTATCTCTTCATGTCCGACACAGCCATGCAGGTGCTGGGAGCAGCCTACATCCAGCACCAATGTTACCATAGCAGTGATGCCAAGAACCAGGTGCGTCTGCTGAAGGGTGTCCCAGCCCTGGTGCAGCTCTTCAGCAGTGACAGCCAGGAGGTCCAGTGCTATGCTACAGGCGCTACACGCAACCTCATCTATGAGAACATGGACAACAAGGCGGCCCTCATTGAGGCCGAGGGAATAACCAAGCTCATCAGTGTCCTAAACGAACCAGATGAGGAGCTTCACAAGAACATCACTGGTATTCTGTGGAACATGTCCTCTAAGGAGAGTCTGAAGGAGAAGTTGGCCAGAGAGACATTGAGTGAGCTCACAGAGAGGGTGCTGGTGCCCCTGTGCAGTGGTGGAGATCCAGAGCTGATCCGTCAGAGTCCATCTGAGGCAGACATCTTCTACAACACCACAGGCTGCCTGAGGAACCTGAGCACAGTGAATGAGAGGACGAGGCAGCAGATGAGAGACATGCGAGGGCTGGTGGACTCGCTGGTGGCCTACATCCAGAACTCCCTTCAGGATGAGAAATCAGAGGACAAAGGTGTAGAGAATGCAGTGTGTGTCCTGAGTAACCTGTCTTATCAGCTGTACAGTGAGATCCCTCCCTCAACCCTACTGCGACTGGAGGGGCCTACGTGGGCCAGAGCCACTACTGGGACTGAGTCCATTGGCTGTTTCACCCCACAGAGCAAGAAGGCAAAAGAGCGACGGAACCAGGAACTGTCCACCTCAGAGGTGGCTAAGCAGCCGAAGGGGGCGGAGTGGCTGTGGCACCCCCAGGTGGTGGGGCTGTATAACCGCGTGCTTCAGCACTATGAGACCAACACGGCAACACGAGAGGCTGCAGCAGGGGCCCTGCAGAACATCACAGCCGGAGAGACCAGGTGGGCGTCAGTGCTGAGTTGGGTGGCTTTAGAGCAGGAGCGGATGCTGCCTGTGGTGCTGGACCTCCTGCAGACACAAAGCGACCAGGAGATGTGTTCCCTCACTGGCCTCCTGAGGAACCTGTCCCGAGACAGCAGAAACAAGAACGACATGTCTACGAAGGTAGTGAACGTTCTGGTGACCAAGCTCCCCAGTGATGGCCACCAGAAGGAACCCTCAGGTGAAGTGGTGGTCAACATATGTGGGATCCTCAACAACCTGGTTGCAGGCAGCTCACTAGCAGCGAGAGACATCACCTTCTTTGATGGACTCCCCAAACTTTTTGCAATCAAGTCTTCCCACAATAGCAGCTCAGGGAAGCTGAAGGCTGCCAAGGCTGCTTCCACAGTACTCTTCAACATGTTCCAGTACAGCAAGCTGCATAAAGATTATAAACAGAAAGGGTTCACAAAGTGTCACTTCACCGACACGGCCATTTAGAACAGACGGCTTGGCCCGTTGACTGGATTCATATTCTGGACCTGCTGGTAGAGCCAGCAGGAGGACCCCCACAATGAACCTGACACATCTGGTCTCAAATGGATGCGTTGATGGAACCTGAATAATTCTGAGGAATGTATTTACTGAATGTATTTAAGGACGGAGGAGAAGCAGCTTTTCTTTActcaatatattttttaaattatcacattttattggtcttTCAAAATGGACTGCTTTACCAGCTTAATATTTGTATTGTCATGAGAGTGTGTTGGATGACTGAGGAATCTTCACTTCAGGACGGTGTGTGTGCGTGGTTCATGCctgtgtgcatgcatatgtgtgaATGTTTGCTTAGTGGACTCATCCCGTAAAAGGCATTGGATGCCTCTTTTCATCTCTGGTACCATATGGGCTCAACCTGCCATTCCTGCAAACATACAGTGAATACAACCCTCTAGATGTTATTAGTTCTACAGTACATGGATGCTTCACTGAAAGACAAGATACAGGATGGGTGCCCTCCAAACTCCCATGGTCATGGTGAAACAATGTTTTCCGGTTCCATCCAAGGAGCCTCTTCTGTGTTTATTTTCACCCCAAATAACTAACAATAAACAGCATCTGACATGACCAGACAGTTGTTCCCAGTGTATCCTTTTAGAATGAAAATAAAATTATCATTATCTTA
>XM_021607536.2
CATAAATTCAGAAAGAAGTGTAGCAGGGTGGTCTGCGTGCCTTTGGGAATTATTGAGTGCATGAGTCTGCCACTTTATACATAGGAGCTGGGCGTCATTTACACATAATAACGAACTAGGGACTCTATTTGAAGGTCCTCTGTCAATTTGAAATGATTGTTTCAATTTGTGGTTATCGCAATGAGTGCGACCGTTGCTTCAGAGAGCTGCTTTCTGTCTGCCCTACAGCCCAACACCGCGGTCACCACTTATGCAGTCCCGTCCGATGTGCAGTTGGGACCGAGGGGTTCCATAATGGACGAGGTGGAAAGGGCTAAGAGGGTTCAACAACAAGTCAATTTGCGCCTCGCCGAAAAGAAGTATTCTACCCTCACACGGCTGAACTGCTCGAACTGCATTTCCCCAGACCATGGTGGCACAATGAGATTTAACACGTACAACCCCGGATTCAGCTCTAAGTCAATGGTGTATAACACAGGGAGCAGGACCATGAAGATGCCCCCGGTATCCCAGCAGTACTTGGGAGGTGGGTACTCGTCTTGCTCAGCGGTGGAGTTAGGACCTAGATATAGAATCAGCCAGCCTCCAGTCAACATTGGCTACCTCCACCATGACGACATCCAGCTGGGTGGCTACCAGACCAGCCGGACGAGGACCGCCAGGTCCAGATCAGTTTGTCAGGTGTCTGGCGGGGGCAGTGGCAGTGTGTGCGGAGGCTGGGGTCAGTACCAGAACTCCCTGCACAGTTTAGACATGCCCACCGCGGTCAACTATCTCTTCATGTCCGACACAGCCATGCAGGTGCTGGGAGCAGCCTACATCCAGCACCAATGTTACCATAGCAGTGATGCCAAGAACCAGGTGCGTCTGCTGAAGGGTGTCCCAGCCCTGGTGCAGCTCTTCAGCAGTGACAGCCAGGAGGTCCAGTGCTATGCTACAGGCGCTACACGCAACCTCATCTATGAGAACATGGACAACAAGGCGGCCCTCATTGAGGCCGAGGGAATAACCAAGCTCATCAGTGTCCTAAACGAACCAGATGAGGAGCTTCACAAGAACATCACTGGTATTCTGTGGAACATGTCCTCTAAGGAGAGTCTGAAGGAGAAGTTGGCCAGAGAGACATTGAGTGAGCTCACAGAGAGGGTGCTGGTGCCCCTGTGCAGTGGTGGAGATCCAGAGCTGATCCGTCAGAGTCCATCTGAGGCAGACATCTTCTACAACACCACAGGCTGCCTGAGGAACCTGAGCACAGTGAATGAGAGGACGAGGCAGCAGATGAGAGACATGCGAGGGCTGGTGGACTCGCTGGTGGCCTACATCCAGAACTCCCTTCAGGATGAGAAATCAGAGGACAAAGGTGTAGAGAATGCAGTGTGTGTCCTGAGTAACCTGTCTTATCAGCTGTACAGTGAGATCCCTCCCTCAACCCTACTGCGACTGGAGGGGCCTACGTGGGCCAGAGCCACTACTGGGACTGAGTCCATTGGCTGTTTCACCCCACAGAGCAAGAAGGCAAAAGAGCGACGGAACCAGGAACTGTCCACCTCAGAGGTGGCTAAGCAGCCGAAGGGGGCGGAGTGGCTGTGGCACCCCCAGGTGGTGGGGCTGTATAACCGCGTGCTTCAGCACTATGAGACCAACACGGCAACACGAGAGGCTGCAGCAGGGGCCCTGCAGAACATCACAGCCGGAGAGACCAGGTGGGCGTCAGTGCTGAGTTGGGTGGCTTTAGAGCAGGAGCGGATGCTGCCTGTGGTGCTGGACCTCCTGCAGACACAAAGCGACCAGGAGATGTGTTCCCTCACTGGCCTCCTGAGGAACCTGTCCCGAGACAGCAGAAACAAGAACGACATGTCTACGAAGGTAGTGAACGTTCTGGTGACCAAGCTCCCCAGTGATGGCCACCAGAAGGAACCCTCAGGTGAAGTGGTGGTCAACATATGTGGGATCCTCAACAACCTGGTTGCAGGCAGCTCACTAGCAGCGAGAGACATCACCTTCTTTGATGGACTCCCCAAACTTTTTGCAATCAAGTCTTCCCACAATAGCAGCTCAGGGAAGCTGAAGGCTGCCAAGGCTGCTTCCACAGTACTCTTCAACATGTTCCAGTACAGCAAGCTGCATAAAGATTATAAACAGAAAGGGTTCACAAAGTGTCACTTCACCGACACGGCCATTTAGAACAGACGGCTTGGCCCGTTGACTGGATTCATATTCTGGACCTGCTGGTAGAGCCAGCAGGAGGACCCCCACAATGAACCTGACACATCTGGTCTCAAATGGATGCGTTGATGGAACCTGAATAATTCTGAGGAATGTATTTACTGAATGTATTTAAGGACGGAGGAGAAGCAGCTTTTCTTTActcaatatattttttaaattatcacattttattggtcttTCAAAATGGACTGCTTTACCAGCTTAATATTTGTATTGTCATGAGAGTGTGTTGGATGACTGAGGAATCTTCACTTCAGGACGGTGTGTGTGCGTGGTTCATGCctgtgtgcatgcatatgtgtgaATGTTTGCTTAGTGGACTCATCCCGTAAAAGGCATTGGATGCCTCTTTTCATCTCTGGTACCATATGGGCTCAACCTGCCATTCCTGCAAACATACAGTGAATACAACCCTCTAGATGTTATTAGTTCTACAGTACATGGATGCTTCACTGAAAGACAAGATACAGGATGGGTGCCCTCCAAACTCCCATGGTCATGGTGAAACAATGTTTTCCGGTTCCATCCAAGGAGCCTCTTCTGTGTTTATTTTCACCCCAAATAACTAACAATAAACAGCATCTGACATGACCAGACAGTTGTTCCCAGTGTATCCTTTTAGAATGAAAATAAAATTATCATTATCTTA
>XM_021607538.2
AAATTCAGAAAGAAGTGTAGCAGGGTGGTCTGCGTGCCTTTGGGAATTATTGAGTGCATGAGTCTGCCACTTTATACATAGGAGCTGGGCGTCATTTACACATAATAACGAACTAGGGACTCTATTTGAAGCCCAACACCGCGGTCACCACTTATGCAGTCCCGTCCGATGTGCAGTTGGGACCGAGGGGTTCCATAATGGACGAGGTGGAAAGGGCTAAGAGGGTTCAACAACAAGTCAATTTGCGCCTCGCCGAAAAGAAGTATTCTACCCTCACACGGCTGAACTGCTCGAACTGCATTTCCCCAGACCATGGTGGCACAATGAGATTTAACACGTACAACCCCGGATTCAGCTCTAAGTCAATGGTGTATAACACAGGGAGCAGGACCATGAAGATGCCCCCGGTATCCCAGCAGTACTTGGGAGGTGGGTACTCGTCTTGCTCAGCGGTGGAGTTAGGACCTAGATATAGAATCAGCCAGCCTCCAGTCAACATTGGCTACCTCCACCATGACGACATCCAGCTGGGTGGCTACCAGACCAGCCGGACGAGGACCGCCAGGTCCAGATCAGTTTGTCAGGTGTCTGGCGGGGGCAGTGGCAGTGTGTGCGGAGGCTGGGGTCAGTACCAGAACTCCCTGCACAGTTTAGACATGCCCACCGCGGTCAACTATCTCTTCATGTCCGACACAGCCATGCAGGTGCTGGGAGCAGCCTACATCCAGCACCAATGTTACCATAGCAGTGATGCCAAGAACCAGGTGCGTCTGCTGAAGGGTGTCCCAGCCCTGGTGCAGCTCTTCAGCAGTGACAGCCAGGAGGTCCAGTGCTATGCTACAGGCGCTACACGCAACCTCATCTATGAGAACATGGACAACAAGGCGGCCCTCATTGAGGCCGAGGGAATAACCAAGCTCATCAGTGTCCTAAACGAACCAGATGAGGAGCTTCACAAGAACATCACTGGTATTCTGTGGAACATGTCCTCTAAGGAGAGTCTGAAGGAGAAGTTGGCCAGAGAGACATTGAGTGAGCTCACAGAGAGGGTGCTGGTGCCCCTGTGCAGTGGTGGAGATCCAGAGCTGATCCGTCAGAGTCCATCTGAGGCAGACATCTTCTACAACACCACAGGCTGCCTGAGGAACCTGAGCACAGTGAATGAGAGGACGAGGCAGCAGATGAGAGACATGCGAGGGCTGGTGGACTCGCTGGTGGCCTACATCCAGAACTCCCTTCAGGATGAGAAATCAGAGGACAAAGGTGTAGAGAATGCAGTGTGTGTCCTGAGTAACCTGTCTTATCAGCTGTACAGTGAGATCCCTCCCTCAACCCTACTGCGACTGGAGGGGCCTACGTGGGCCAGAGCCACTACTGGGACTGAGTCCATTGGCTGTTTCACCCCACAGAGCAAGAAGGCAAAAGAGCGACGGAACCAGGAACTGTCCACCTCAGAGGTGGCTAAGCAGCCGAAGGGGGCGGAGTGGCTGTGGCACCCCCAGGTGGTGGGGCTGTATAACCGCGTGCTTCAGCACTATGAGACCAACACGGCAACACGAGAGGCTGCAGCAGGGGCCCTGCAGAACATCACAGCCGGAGAGACCAGGTGGGCGTCAGTGCTGAGTTGGGTGGCTTTAGAGCAGGAGCGGATGCTGCCTGTGGTGCTGGACCTCCTGCAGACACAAAGCGACCAGGAGATGTGTTCCCTCACTGGCCTCCTGAGGAACCTGTCCCGAGACAGCAGAAACAAGAACGACATGTCTACGAAGGTAGTGAACGTTCTGGTGACCAAGCTCCCCAGTGATGGCCACCAGAAGGAACCCTCAGGTGAAGTGGTGGTCAACATATGTGGGATCCTCAACAACCTGGTTGCAGGCAGCTCACTAGCAGCGAGAGACATCACCTTCTTTGATGGACTCCCCAAACTTTTTGCAATCAAGTCTTCCCACAATAGCAGCTCAGGGAAGCTGAAGGCTGCCAAGGCTGCTTCCACAGTACTCTTCAACATGTTCCAGTACAGCAAGCTGCATAAAGATTATAAACAGAAAGGGTTCACAAAGTGTCACTTCACCGACACGGCCATTTAGAACAGACGGCTTGGCCCGTTGACTGGATTCATATTCTGGACCTGCTGGTAGAGCCAGCAGGAGGACCCCCACAATGAACCTGACACATCTGGTCTCAAATGGATGCGTTGATGGAACCTGAATAATTCTGAGGAATGTATTTACTGAATGTATTTAAGGACGGAGGAGAAGCAGCTTTTCTTTActcaatatattttttaaattatcacattttattggtcttTCAAAATGGACTGCTTTACCAGCTTAATATTTGTATTGTCATGAGAGTGTGTTGGATGACTGAGGAATCTTCACTTCAGGACGGTGTGTGTGCGTGGTTCATGCctgtgtgcatgcatatgtgtgaATGTTTGCTTAGTGGACTCATCCCGTAAAAGGCATTGGATGCCTCTTTTCATCTCTGGTACCATATGGGCTCAACCTGCCATTCCTGCAAACATACAGTGAATACAACCCTCTAGATGTTATTAGTTCTACAGTACATGGATGCTTCACTGAAAGACAAGATACAGGATGGGTGCCCTCCAAACTCCCATGGTCATGGTGAAACAATGTTTTCCGGTTCCATCCAAGGAGCCTCTTCTGTGTTTATTTTCACCCCAAATAACTAACAATAAACAGCATCTGACATGACCAGACAGTTGTTCCCAGTGTATCCTTTTAGAATGAAAATAAAATTATCATTATCTTA

Function

symbol description
pkp3 Enables alpha-catenin binding activity; cell adhesion molecule binding activity; and enzyme binding activity. Involved in desmosome assembly; negative regulation of mRNA catabolic process; and protein localization to plasma membrane. Located in cell junction; nucleoplasm; and plasma membrane. Part of messenger ribonucleoprotein complex.

NR:

description
plakophilin-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607537.2 False 2788 mRNA 0.51 13 72117738 72135463
XM_021607536.2 False 2878 mRNA 0.51 12 72118506 72135463
XM_021607538.2 True 2781 mRNA 0.51 13 72118509 72135463

Neighbor

gene id symbol gene type direction distance location
LOC110526509 LOC106563533 coding upstream 19493 72074150 ~ 72098245 (+)
LOC110526507 LOC106587468 coding upstream 95863 72011095 ~ 72021875 (+)
LOC118964930 NA coding upstream 149936 71961924 ~ 71967802 (+)
LOC110526495 LOC106587464 coding upstream 427378 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1496228 70615476 ~ 70621510 (+)
LOC110526514 LOC106563530 coding downstream 21727 72157190 ~ 72181309 (+)
LOC110526515 LOC106587477 coding downstream 49609 72185072 ~ 72207042 (+)
LOC110526517 LOC106587478 coding downstream 85885 72221348 ~ 72244464 (+)
LOC100136249 LOC100136249 coding downstream 151568 72287031 ~ 72294897 (+)
mybpc3 LOC106587482 coding downstream 162530 72297993 ~ 72339964 (+)
G542022 NA non-coding upstream 115519 72001916 ~ 72002219 (+)
G542021 NA non-coding upstream 116517 72001016 ~ 72001221 (+)
G542011 NA non-coding upstream 140257 71977214 ~ 71977481 (+)
G542010 NA non-coding upstream 140797 71976616 ~ 71976941 (+)
G542009 NA non-coding upstream 142220 71975196 ~ 71975518 (+)
G542092 NA non-coding downstream 6053 72141516 ~ 72142559 (+)
G542137 NA non-coding downstream 138853 72274316 ~ 72292811 (+)
G542162 NA non-coding downstream 161281 72296744 ~ 72296989 (+)
G542131 LOC106587483 non-coding downstream 206449 72341912 ~ 72343982 (+)
G542179 NA non-coding downstream 209474 72344937 ~ 72345730 (+)
G542053 NA other upstream 15264 72101380 ~ 72102474 (+)
G541903 NA other upstream 313276 71800040 ~ 71804462 (+)
LOC110526485 fam92b other upstream 1563818 70551763 ~ 70558098 (+)
G540179 NA other upstream 1633370 70481950 ~ 70484368 (+)
G542100 LOC106587475 other downstream 15557 72151020 ~ 72152394 (+)
saa saa other downstream 529997 72665460 ~ 72666872 (+)
G542890 NA other downstream 630218 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 903158 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1237342 73190979 ~ 73392251 (+)

Expression


Co-expression Network