LOC110526524 (LOC106587487)


Basic Information

Item Value
gene id LOC110526524
gene name LOC106587487
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72613695 ~ 72631381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607563.2
TGCGGGGGAGGGCATGGATAGTGGAAAAGGGGCGAGCATGAGTCAGTGGCAGAGTGTGTGAAAGCTGTGGGAGCAGAAGAAGCTTTAACAACATGACAAGTAGATGTAAGTCAAGTTGCCATGTTATGAGGAGGACTAAGGAGGACTGAGAGTAGGATGACGGTAGAAGACAGAGGTGACGGGTGAAGTACATTCTAATGTACCACCTTCTAGAGAGCTATGCTATGTGCTTGTGGGAGGGCTACTACTAATCAAACGTAGTGATCTAATAATGTGTGGTTAATTCACAGTTTGCCTCAATTTAGCACGGAGTTGATCGGCGTCTAAAGTAAGTGAGAATTAAAAAGGAAAATGTAGTATCCATTGCCATGGAGGGAGACTTATTTTTGGATGCTGTTATTTTTGCCAAACAAAAACAGTCTTAGGGAATAGCCTTGCTGTAGAACAGGTATGGAAACTACATCCACGTTTAGTTGATAGGTGATGAGCTATGTAAAAAAATACATCTTCTGCAAAAAGAATAGGCTATCTGATTGTGCACACCTGATGTTTTTGAAGGTATCGAGTTGATTCCAGGGACTTCATGGTCTTGCATAGCCCTCTTGACTTCCATAACCCaccccaaaaacacacacacagtaacacacggacacacaaacactcacacacacacacacacacacacaggttgatgGAGTTTATGGATGTGTACCTGGGGAATGCTATCTCTCTTTATCCTAGAAGTGGTCCCTTGGACTGAAAGTTAaaatagacatacagtatgtacagaatTAGACTTAGGGGAGGGTTACCATGCATGCAAGTGTCAGTGGCATCGTGTTTTCAGGTACAGCCATCTGATTGAGTAGTGTGTTACATTGTTAAACCTAGTTGTCTAATTAGTCCGACAGTCCACGAAGCCTATttgttgtgtgtgttcatgtgctaGAGATTGAATGTAGCCATAGGCTACCATTCCTACAGTATTTGCCATGAGCGACAAATTATTAATACCATTCTGTTTCACTAACAATTCCCTAGATAGTTCGAATCCTGGTTCAAAGTTGGGCAAATATCTCCTATTACTCATGTTACTTACCAGTACATTTGTAGCGCATATACGAGTGTCACAGGTGTGACGAATACCCCAAGCATAGCGCTTCGTCACTGCATAACAATTAGATGGCTGAGTGTTCGCCGTGCAACTGATGGAATTTTACTGAAAACAGATATCGCGTTTGAACTTGGAATTAATGATTGTAAACTGAAACATTTAGGATTTAAACCATTGAGTTGTGGGCTACAGCAAAATACCTAAACATATCTAGAAGTTTAGGGCATAGCCTAGGCTACTTGAAGACGTGGATTCACTTCTGATTTTTCTAGGCATTTGAAAACGAAGCAAATAACAGTATATTGCAAATGTAAGTATATGAGTCTGGCTCTGTTTCGTCCTCAACGCTAGTTTTATTTTTAGCAGCAACAAGTTCTCAAAGAACATAATCTCACTAGCGAGAGGGACGATAAACGATTGAGAATTGTTTGTCTTATCGGATATCACCCCACCTCTGATTGTAAAAAATCGAAATGTTAAAAGTTGTGCCGGTTTTGCGTAATATTGCCTGAGTGGTAACAATAGATTGGCAGCGAAATATATAACCTAGGCTACTTCGTGCATATGTCTTATATTGTACAACTGTTAGGGGGCTCAATATTATTGTGCAAACATAGCCTAATTTAAAGAACTGAGATTGTATTCATTGAGTGGTCATTTGGGGTCCCTCATAAACTTGACTGCCTTCGCTTATTTCAATCACGTAAGACCTCTAATTGCGTTGTCCGGGAGAGGGTATTGCGTATATCTGTCTTTCTATCTATACAGGCTTTTGTGAAAATCGCGGCTGGTTGTTGTTTGTCCTGACTGTAGAGCCACCAAGGTGTTACAGAGTTTAAACACGCGGAGATTGCAAAGGGTTATTAGATTGATAAGTCACCGAAGTGGTGGGCGATCTACTGAGCACAGCAGAAGTTCTCATATGATGACTTCAAACAAGACACATTACCTACCAGCATCTGTTGGAGTGAGTGGATATTAAGACACTTCTATCTCCAGGACAGCGTAGAGGAAAATGttccacCAGGTTAGAAGAGTGATGACCATCCTGTTCCTTACTATGGTTATTTCGTACTTCAGTTGCATGAGAGCTGCTCCCATGAGAGACGCCCCAGGTATAAGGGGCCACCGAACGGAAGGCTACTTGGGTGCTGCAGTGACTGCCGGCCAGGGCCACGGGACTCCACAGAGCGGGGGTGGGCCGGGCCAGCATGGGGGACTGCCCTCGCTCACAGACACGTTTGAGCAGGTGATTGAGGAGCTCTTGGAGGTGGAAGGAGAAGCATCTCAGCTGGGGCCTGGAGCTGACAAGGGCCAGGGAGGAGGGGGTCCTTCCTCTGTGGTCACCACGGAGACCAAGGATGTCGACCTGTATGCATCGCGGGTGATGATCAGCAACCAAGTGCCTTTAGAGCCACCGCTGCTTTTTCTCCTGGAGGAATACAAAAACTACCTGGACGCCGCTAACATGTCCATGAGGGTACGGCGGCATTCTGACCCGTCGCGGCGTGGCGAGCTGAGTGTGTGTGATAGTATTAGCCAGTGGGTGACAGCTGTGGACAAAAAGACAGCAATAGACATGTCTGGGCAGACTGTTACCGTCCTGGAAAAGGTCCCTGTCCCCAATGGCCAACTGAAGCAATACTTTTATGAGACCAAATGTAACCCTATGGGGTACACAAAGGAGGGCTGCCGTGGAATAGACAAGAGGCATTATAACTCCCAATGCAGGACAACCCAGTCCTACGTGCGAGCGCTCACCATGGATAGCAAAAAGAAGATTGGCTGGCGGTTTATAAGGATAGACACATCATGTGTATGCACATTGACCATTAAAAGAGGAAGatagtgtatataatgtatagATTTTATTGAGAGTTTAAAAAAGAGAGTAAAGAGAAAATATCTATTTGTATATATACATAACAGGGTAAATTATTCCGTCAAATGAAAATTTTATGGACTGCATGTAAAAAAAGATGACGTTTATACAGTAAAAGTGATACTACAGTCTATTTATTGAACATATTCATGACCTTGTAAACAATTAAAAAAAGATCTGATCAGTCATTTGCGCCCAGTTTAAATTACTATATCACATTCCTCAAGACATTGTGGTTTGTTTACGTTGCCAAGAATGTGAGAAAGAAGGAAAAGAGCAatgaggatgagggagagggtgaggacgAGTTCCATTAAAAAAAACTTGCATGCTGCTTCAATTGTGAATTGAGAATTTGTCCACCTAAGAAAAAAGGATATGATACCGACCAAAACATTCCGTTTACATACTCAACAGTAAAAGGGTTTTCCTCCTCAGTACTTTATCTGTTTACTGTTCTAAACTTCTCAAGGCGATGTTGGAATTACATACTATGTCAAGGTGCTGTTGTCAAAGCTTtgctgtttatttttttatccccaCCAGAGGACAAAatataagaatatatatatatatatatataaaatttatTCATTGACATATGTTTCTGGATTAATATAATTCATTTTGTATGTTGTGAAGTTGTTTGCAATATTAAATTGAAATATTTAAAGAAATAAAAATGACTATAGGCAACTGAAAAA
>XM_021607565.2
TGACGAGGCGTTGGGAAGAAGTAGAGTAAAGCAGTATCAAATGGTACTTAAGAAAACTATAGATTTTTTTTGCCCCCTTAGTTACCCTCGCTGTGTTATGCTTTCAGCACGTTGGACAGAGGCACCGGAGTCGTTGCATGGACTAAAACACCAAGTGGACATCAACTCTCTTTTGCTGTTCCCTTACCAAAGCTGGGGAATTTTTTTCAACTTTTGGTAAGCGTATGCTGAGGGAGCCTTGTGATCTAAAACGGAAAACAGGAGAAAAGCGCGTGTCAATGAAGGGCTTGCGCTTTGAGATTTGTCTCGCCACTTAGAGCATGTGAAAGTTAAAATCTTAGAGCCGCTGTATAGGGCGTGCGTTCTTTTCAAGCTCCAGTCTTGGTATACAGCGTTAACTTTGGGAAATGCAAGTCTTGGTCTTGGAGATCTAACCACTGATAGTGGTTGTCAGCCCTTAAAAAGttccacCAGGTTAGAAGAGTGATGACCATCCTGTTCCTTACTATGGTTATTTCGTACTTCAGTTGCATGAGAGCTGCTCCCATGAGAGACGCCCCAGGTATAAGGGGCCACCGAACGGAAGGCTACTTGGGTGCTGCAGTGACTGCCGGCCAGGGCCACGGGACTCCACAGAGCGGGGGTGGGCCGGGCCAGCATGGGGGACTGCCCTCGCTCACAGACACGTTTGAGCAGGTGATTGAGGAGCTCTTGGAGGTGGAAGGAGAAGCATCTCAGCTGGGGCCTGGAGCTGACAAGGGCCAGGGAGGAGGGGGTCCTTCCTCTGTGGTCACCACGGAGACCAAGGATGTCGACCTGTATGCATCGCGGGTGATGATCAGCAACCAAGTGCCTTTAGAGCCACCGCTGCTTTTTCTCCTGGAGGAATACAAAAACTACCTGGACGCCGCTAACATGTCCATGAGGGTACGGCGGCATTCTGACCCGTCGCGGCGTGGCGAGCTGAGTGTGTGTGATAGTATTAGCCAGTGGGTGACAGCTGTGGACAAAAAGACAGCAATAGACATGTCTGGGCAGACTGTTACCGTCCTGGAAAAGGTCCCTGTCCCCAATGGCCAACTGAAGCAATACTTTTATGAGACCAAATGTAACCCTATGGGGTACACAAAGGAGGGCTGCCGTGGAATAGACAAGAGGCATTATAACTCCCAATGCAGGACAACCCAGTCCTACGTGCGAGCGCTCACCATGGATAGCAAAAAGAAGATTGGCTGGCGGTTTATAAGGATAGACACATCATGTGTATGCACATTGACCATTAAAAGAGGAAGatagtgtatataatgtatagATTTTATTGAGAGTTTAAAAAAGAGAGTAAAGAGAAAATATCTATTTGTATATATACATAACAGGGTAAATTATTCCGTCAAATGAAAATTTTATGGACTGCATGTAAAAAAAGATGACGTTTATACAGTAAAAGTGATACTACAGTCTATTTATTGAACATATTCATGACCTTGTAAACAATTAAAAAAAGATCTGATCAGTCATTTGCGCCCAGTTTAAATTACTATATCACATTCCTCAAGACATTGTGGTTTGTTTACGTTGCCAAGAATGTGAGAAAGAAGGAAAAGAGCAatgaggatgagggagagggtgaggacgAGTTCCATTAAAAAAAACTTGCATGCTGCTTCAATTGTGAATTGAGAATTTGTCCACCTAAGAAAAAAGGATATGATACCGACCAAAACATTCCGTTTACATACTCAACAGTAAAAGGGTTTTCCTCCTCAGTACTTTATCTGTTTACTGTTCTAAACTTCTCAAGGCGATGTTGGAATTACATACTATGTCAAGGTGCTGTTGTCAAAGCTTtgctgtttatttttttatccccaCCAGAGGACAAAatataagaatatatatatatatatatataaaatttatTCATTGACATATGTTTCTGGATTAATATAATTCATTTTGTATGTTGTGAAGTTGTTTGCAATATTAAATTGAAATATTTAAAGAAATAAAAATGACTATAGGCAACTGAAAAA
>XM_021607566.2
ATCGCGTAGTGCCGTCGCGGCGCAGTTTATAGCATGCAACCCCTTCGGTTTTAAGCGATCTCCAAAGGAGCCGCGCAGCCATGGGAGTCCATTACCTCAACCATGCAATTTCCACCATCAATAATTTAATCTATTTGCTCCAAAGCTGAAGAGATATCTCTAAGCTGTTGGACAGTACAGGGAAAATATAGCTTAAGTAATTACACAGGGGGTTGTCCAAAACATCCCAGATGACACTGTCCTGTTGAATGGTCTCCTTTACGACTGGGCAGTAAAAGttccacCAGGTTAGAAGAGTGATGACCATCCTGTTCCTTACTATGGTTATTTCGTACTTCAGTTGCATGAGAGCTGCTCCCATGAGAGACGCCCCAGGTATAAGGGGCCACCGAACGGAAGGCTACTTGGGTGCTGCAGTGACTGCCGGCCAGGGCCACGGGACTCCACAGAGCGGGGGTGGGCCGGGCCAGCATGGGGGACTGCCCTCGCTCACAGACACGTTTGAGCAGGTGATTGAGGAGCTCTTGGAGGTGGAAGGAGAAGCATCTCAGCTGGGGCCTGGAGCTGACAAGGGCCAGGGAGGAGGGGGTCCTTCCTCTGTGGTCACCACGGAGACCAAGGATGTCGACCTGTATGCATCGCGGGTGATGATCAGCAACCAAGTGCCTTTAGAGCCACCGCTGCTTTTTCTCCTGGAGGAATACAAAAACTACCTGGACGCCGCTAACATGTCCATGAGGGTACGGCGGCATTCTGACCCGTCGCGGCGTGGCGAGCTGAGTGTGTGTGATAGTATTAGCCAGTGGGTGACAGCTGTGGACAAAAAGACAGCAATAGACATGTCTGGGCAGACTGTTACCGTCCTGGAAAAGGTCCCTGTCCCCAATGGCCAACTGAAGCAATACTTTTATGAGACCAAATGTAACCCTATGGGGTACACAAAGGAGGGCTGCCGTGGAATAGACAAGAGGCATTATAACTCCCAATGCAGGACAACCCAGTCCTACGTGCGAGCGCTCACCATGGATAGCAAAAAGAAGATTGGCTGGCGGTTTATAAGGATAGACACATCATGTGTATGCACATTGACCATTAAAAGAGGAAGatagtgtatataatgtatagATTTTATTGAGAGTTTAAAAAAGAGAGTAAAGAGAAAATATCTATTTGTATATATACATAACAGGGTAAATTATTCCGTCAAATGAAAATTTTATGGACTGCATGTAAAAAAAGATGACGTTTATACAGTAAAAGTGATACTACAGTCTATTTATTGAACATATTCATGACCTTGTAAACAATTAAAAAAAGATCTGATCAGTCATTTGCGCCCAGTTTAAATTACTATATCACATTCCTCAAGACATTGTGGTTTGTTTACGTTGCCAAGAATGTGAGAAAGAAGGAAAAGAGCAatgaggatgagggagagggtgaggacgAGTTCCATTAAAAAAAACTTGCATGCTGCTTCAATTGTGAATTGAGAATTTGTCCACCTAAGAAAAAAGGATATGATACCGACCAAAACATTCCGTTTACATACTCAACAGTAAAAGGGTTTTCCTCCTCAGTACTTTATCTGTTTACTGTTCTAAACTTCTCAAGGCGATGTTGGAATTACATACTATGTCAAGGTGCTGTTGTCAAAGCTTtgctgtttatttttttatccccaCCAGAGGACAAAatataagaatatatatatatatatatataaaatttatTCATTGACATATGTTTCTGGATTAATATAATTCATTTTGTATGTTGTGAAGTTGTTTGCAATATTAAATTGAAATATTTAAAGAAATAAAAATGACTATAGGCAACTGAAAAA
>XM_021607567.2
CAGGAACACTTTATAGGATGATAAAGGATTACCTCTTATGAATAATTATTTTCAAATTACAATATTGAGAAAATGTTGGAACGATTTCCTGCTCATCTATGTTTGCTTGGCTATGTTTTGTCTCCAAGGTTGTCTTGTCGGTAGGAGGAAAGATGTCCCCATCCCCCTGCAAACACGTACAAACCAagccctcctttcctctcctcctccatcccctcccttccctctaacacacactcacactctggAGAAACACGTCACTGAGCTTGGGGACTCAGCGGCTCATTAAGGAGAAGGATGTGATATTCTCAATCGAGACTGTGAGACTCCCAGCACGCCTATTTATAGATGCAATATCTCTATGGCAGTCACCGTAGCGTTGGCTAATCGCAGCCGTGGCCCCAGACGCCAATTAAGAATGAAACAAATGCTTTTTAGGTGGGGTCTGCCCCTCCCTTCTGCTAAGGTCCTTCCGTCCGCCACACTGCCTGGTGGGGGAGCGGATCTGCTTGGAGCGTATTCCTGCATCAGGTCGGGATACAAGGAGGGCGGCATGCAGAGTGCAGTCAAAGCCCTGCCATGGCTATTTTTAAATGCACCCCTCTGGAGAGCAAGAGCTAGGTTTCTTATATTGTGGTTGTTTTCATATGTTTGACTCTGGGTCTGGGATGTCCGTGGATATGTTGAATTGCTGTGACTCATAGGGCATAAAGttccacCAGGTTAGAAGAGTGATGACCATCCTGTTCCTTACTATGGTTATTTCGTACTTCAGTTGCATGAGAGCTGCTCCCATGAGAGACGCCCCAGGTATAAGGGGCCACCGAACGGAAGGCTACTTGGGTGCTGCAGTGACTGCCGGCCAGGGCCACGGGACTCCACAGAGCGGGGGTGGGCCGGGCCAGCATGGGGGACTGCCCTCGCTCACAGACACGTTTGAGCAGGTGATTGAGGAGCTCTTGGAGGTGGAAGGAGAAGCATCTCAGCTGGGGCCTGGAGCTGACAAGGGCCAGGGAGGAGGGGGTCCTTCCTCTGTGGTCACCACGGAGACCAAGGATGTCGACCTGTATGCATCGCGGGTGATGATCAGCAACCAAGTGCCTTTAGAGCCACCGCTGCTTTTTCTCCTGGAGGAATACAAAAACTACCTGGACGCCGCTAACATGTCCATGAGGGTACGGCGGCATTCTGACCCGTCGCGGCGTGGCGAGCTGAGTGTGTGTGATAGTATTAGCCAGTGGGTGACAGCTGTGGACAAAAAGACAGCAATAGACATGTCTGGGCAGACTGTTACCGTCCTGGAAAAGGTCCCTGTCCCCAATGGCCAACTGAAGCAATACTTTTATGAGACCAAATGTAACCCTATGGGGTACACAAAGGAGGGCTGCCGTGGAATAGACAAGAGGCATTATAACTCCCAATGCAGGACAACCCAGTCCTACGTGCGAGCGCTCACCATGGATAGCAAAAAGAAGATTGGCTGGCGGTTTATAAGGATAGACACATCATGTGTATGCACATTGACCATTAAAAGAGGAAGatagtgtatataatgtatagATTTTATTGAGAGTTTAAAAAAGAGAGTAAAGAGAAAATATCTATTTGTATATATACATAACAGGGTAAATTATTCCGTCAAATGAAAATTTTATGGACTGCATGTAAAAAAAGATGACGTTTATACAGTAAAAGTGATACTACAGTCTATTTATTGAACATATTCATGACCTTGTAAACAATTAAAAAAAGATCTGATCAGTCATTTGCGCCCAGTTTAAATTACTATATCACATTCCTCAAGACATTGTGGTTTGTTTACGTTGCCAAGAATGTGAGAAAGAAGGAAAAGAGCAatgaggatgagggagagggtgaggacgAGTTCCATTAAAAAAAACTTGCATGCTGCTTCAATTGTGAATTGAGAATTTGTCCACCTAAGAAAAAAGGATATGATACCGACCAAAACATTCCGTTTACATACTCAACAGTAAAAGGGTTTTCCTCCTCAGTACTTTATCTGTTTACTGTTCTAAACTTCTCAAGGCGATGTTGGAATTACATACTATGTCAAGGTGCTGTTGTCAAAGCTTtgctgtttatttttttatccccaCCAGAGGACAAAatataagaatatatatatatatatatataaaatttatTCATTGACATATGTTTCTGGATTAATATAATTCATTTTGTATGTTGTGAAGTTGTTTGCAATATTAAATTGAAATATTTAAAGAAATAAAAATGACTATAGGCAACTGAAAAA

Function

NR:

description
brain-derived neurotrophic factor-like isoform X1

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04355 BDNF; brain-derived neurotrophic factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607563.2 False 3700 mRNA 0.42 2 72613695 72631381
XM_021607565.2 False 2033 mRNA 0.43 2 72616421 72631381
XM_021607566.2 False 1846 mRNA 0.43 2 72624178 72631381
XM_021607567.2 True 2281 mRNA 0.44 2 72627796 72631381
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110526523 LOC106587484 coding upstream 18089 72570817 ~ 72595606 (+)
mybpc3 LOC106587482 coding upstream 273731 72297993 ~ 72339964 (+)
LOC118965108 NA coding upstream 281005 72332636 ~ 72332690 (+)
LOC100136249 LOC100136249 coding upstream 318798 72287031 ~ 72294897 (+)
LOC110526517 LOC106587478 coding upstream 369231 72221348 ~ 72244464 (+)
LOC110526527 lin7c coding downstream 1400 72632781 ~ 72638350 (+)
LOC110526528 LOC106587490 coding downstream 10370 72641751 ~ 72643688 (+)
frih frih coding downstream 23054 72654435 ~ 72658903 (+)
saa saa coding downstream 34160 72665460 ~ 72666872 (+)
LOC110518525 LOC106587448 coding downstream 36484 72667865 ~ 72672678 (+)
G542781 NA non-coding upstream 14297 72599155 ~ 72599398 (+)
G542742 NA non-coding upstream 17033 72596373 ~ 72596662 (+)
G542741 NA non-coding upstream 17714 72595744 ~ 72595981 (+)
G542250 NA non-coding upstream 158344 72448348 ~ 72455351 (+)
G542202 NA non-coding upstream 238095 72375273 ~ 72375600 (+)
LOC110526531 LOC106587514 non-coding downstream 76869 72708156 ~ 72815720 (+)
G542860 NA non-coding downstream 84921 72716302 ~ 72721047 (+)
G542891 NA non-coding downstream 135530 72766911 ~ 72767323 (+)
G542894 NA non-coding downstream 147654 72779035 ~ 72780214 (+)
G542898 NA non-coding downstream 161837 72793218 ~ 72793696 (+)
G542100 LOC106587475 other upstream 461301 72151020 ~ 72152394 (+)
G542053 NA other upstream 511221 72101380 ~ 72102474 (+)
G541903 NA other upstream 809233 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1992221 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 2059775 70551763 ~ 70558098 (+)
G542890 NA other downstream 134300 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 407240 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 741424 73190979 ~ 73392251 (+)
G544565 NA other downstream 1656397 74287778 ~ 74288138 (+)

Expression

LOC110526524(LOC106587487) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110526524(LOC106587487) Expression in each Bioproject

Bar chart with 15 bars.
LOC110526524(LOC106587487) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network