LOC110526527 (lin7c)


Basic Information

Item Value
gene id LOC110526527
gene name lin7c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72632781 ~ 72638350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607571.2
GCCGATTGCGTGTCCTTGACGCAACAACATTCCCCGTCAATACAGCTCAAATCTGTTTATCGCCGAGTGGATATTTTGCTCGTTGATAATTTCTCCCGAACAGTGCCGGATTTAGGCTATTATGGCGTCTTTGGGGGAACCTGTTCGACTGGAAAGAGACATTTCTCGAGCCATTGAATTGCTTGACAAGCTCCAGAGGACGGGGGAAGTGCCTCCCCAGAAACTGCAGGCACTGCAAAGGGTCTTGCAGAGCGAGTTCTGTAATGCTGTGCGAGAGGTGTATGAACATGTGTATGAGACAGTGGACATTAATAGTAGCCCTGAAGTCAGGGCCAATGCCACAGCCAAGGCCACTGTTGCAGCGTTTGCGGCCAGTGAGGGGCACTCACACCCTCGCGTGGTGGAGCTGCCTAAGACTGAGGAAGGACTTGGCTTCAATATAATGGGAGGGAAGGAACAGAACTCTCCTATTTACATCTCACGCATCATTCCTGGGGGAATTGCAGACCGCCACGGGGGCCTCAAGAGAGGCGACCAGCTTCTTTCTGTCAATGGGGTGAGTGTGGAGGGGGAGCACCATGAGAaagctgtggagcttctcaaagctGCCCAGGGCACTGTGAAGCTGGTGGTCAGGTACACTCCTAAAGTCCTTGAGGAAATGGAGTCCCGCTTTGAGAAGATGAGGTCTGCAAAGCGCCGGCAACAGAACAGCTATCCCCAATAGTGTTTTTTCATCACTGGCACGCAATTCCCTCATCTTTCACCCTCTTCCAGCCATCTGTCCCAGTCACAATTTTAACCTTCATCTAAAACTTAGCTCACTACGTTTAGTATGTATCCACATATATTATATTTCTACCTTTTCTACAACCTACCCCTTCAACTTCTGACACTATCCTCCACACCACGACTCAAGGCAAACACTAGATTTATCATATTTCTACAAGTAGTTGGTCATTCACGCTTTACATATGCATTACATTTTGGACTGACATATTGGATGCCATTTGAGGACCTGTGAGACCCACCACAGAGGTTCATTGATTGAAGAgatggtattttttttattttagtacAGCCTTTATAAAGTGCCTCAGGGCAATACAAATGTATTTGAACTTGTACTGTCATTCAAATTACAAAACTAAGCTCAGATGATTCAACACTTCAATGTCAGGTTTACCAAGCATTTGCAGGAATGCAAACGTCACACCTGCTATTTTTGAGAGCGAAAAGAAACTGGTACTAATAGAATATGTTTAGGATATAAGGGTTATAGAATAAATATTATTGAAGgaattgggtattgtgtgtaaattgatatAGACATTTTGTGTTTACCAGTATATGAAGGCTAAATGGAGACCGTTATGTTTTACCATTGTctctgtttagttttttttcctCCTGAAAATAACCGGTATGATCATTTTGGTAGATCTGTGTTTAGTATTCTAATCTAAATTCTAAATTGTTAAGGAATTAAATAATACATTCTCTGAATTTATTTTTAACCTCGTGCTGATGTTTTCACTGTCTTACAAACTTTAAAAAAAGATTTTGCTGACTCATAAATTATTCAACAACTTCTAGCTTTTGCATCCCATGAATGATTTAGAGCCTTCAAATGCGTAGGTTTTCAGTGGGCTGGGAGAAGGCTTTCTAAGATGCTGTGCTCTCTTTTAAAATTCAGATAACCTTTTCCCCTTATGACAGTAAGGGGGGACAGTATACAATTTTGAGACCTGAGGCAAACCTGACATTTTAAATATTTCAAAAGAGCAATAAGTCAGAACATTTTGAAACCAGAGGGGTATTTCACAAACCGGGTCAGTGGATTTTGAGATTCCCCAAGAAAGCTGCTTGCCCGTAGTAATTTTAGTTTTTCATTTCTTTGAGTTACTTTGCTCTATTCACACTTCAACGGTGTGGCCAACTCATTCAAGGTGGGTGTACAGTAGGTTGGCCAACTTGTCGCAGCGATGACGAACATGCCATTGTTGTCCAACATCAACTGATGTTTCCAAAAAGCATAAACGAGAAAAAGACAGTATTGCACTACCACCAGCATGGTTGTTTGAAATAGGGTGCTGCTACCTGCTATCTTTCAACGTGAGTAAACTCCTTGAATGCCATTCATTAAAAAATGCATGAAATCTACTGGTATGTGAAACCCACCTTCATTAATACAGTTCATAATAAAGACCAATAACGTTGCTATGCTGTGGTTGAGTTAACAAAGCCATATTTTTGGTTGCTGACTTACAGGTTCGAATAATTACTTGTACCTAATTTTATAGCTCAACATGTcccatttgggtgaactatcccttgaAGATGTGAACATAACTTGGCATCACTGATTTCAATTCCAGATATTATGTTAATTTTCAGCTGAATAGCATAGTTTGTATTTTATCTTATGATGGTCACTTGTGAATGTACTGTGTAATTCCAGTTATATTGatgaaattagatttttttttttttttgctgaattgAATAAAATGTATTCTTCTAAATCATGAAACATTTTGTAATTCCTGCACTCTAAAGTTTTCTTCACTTCATAAAGAAATGATTCTATGTTCTATTCATTCTTTTAAAAAGATGTGTAAAGTAAGCAAAGGCTTAACAGATTTGGCACCCCATAGCAAGTTGGTTACATGTCAGCTTGCCCCTTAGTATGATTACTGAAATGTCCTTGTGACTGACATGAATGGTTTCAACAGAATGTTCAGGACAGTTACCTTGCCAATTCCTAGAGCTTTGTGAAACACCCCTCAGGTTTCTACCCTCTTATATTTTGAAAGGGTCAATAGAATATTTTTCTAAGTGTTTTCTtttgatatttttattttttacaagggATTTtcatgagagaaaaaaaatcctgaaatgaTTTGTATTCCTTTTCTGACTGTTATATTCTTGTTTTGAGTACCAAGACCAAACTTGCAACAATTATGAGAACTATTTGATATCATATTGAATGTTTGCTTGTTTTGGACTGTTAGGTCTACTTACAAAATGTGCTGCTCTCAGTTTATTCTGTCCATTTGTATTGTATATTGTGTTACAAAAACTGCACAAAATAAATTATACCATGAAAGATG

Function

symbol description
lin7c Enables L27 domain binding activity. Acts upstream of or within maintenance of epithelial cell apical/basal polarity. Predicted to be located in plasma membrane and presynapse. Predicted to be part of MPP7-DLG1-LIN7 complex. Predicted to be active in basolateral plasma membrane; cell-cell junction; and synapse. Is expressed in several structures, including eye; neural rod; neural tube; neuroepithelial cell; and optic vesicle. Orthologous to human LIN7C (lin-7 homolog C, crumbs cell polarity complex component).

NR:

description
protein lin-7 homolog C

GO: NA

KEGG:

id description
K19931 LIN7; protein lin-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607571.2 True 3119 mRNA 0.39 5 72632781 72638350

Neighbor

gene id symbol gene type direction distance location
LOC110526524 LOC106587487 coding upstream 1400 72613695 ~ 72631381 (+)
LOC110526523 LOC106587484 coding upstream 37175 72570817 ~ 72595606 (+)
mybpc3 LOC106587482 coding upstream 292817 72297993 ~ 72339964 (+)
LOC118965108 NA coding upstream 300091 72332636 ~ 72332690 (+)
LOC100136249 LOC100136249 coding upstream 337884 72287031 ~ 72294897 (+)
LOC110526528 LOC106587490 coding downstream 3401 72641751 ~ 72643688 (+)
frih frih coding downstream 16085 72654435 ~ 72658903 (+)
saa saa coding downstream 27191 72665460 ~ 72666872 (+)
LOC110518525 LOC106587448 coding downstream 29515 72667865 ~ 72672678 (+)
LOC118964931 saa coding downstream 50993 72689343 ~ 72690657 (+)
G542781 NA non-coding upstream 33383 72599155 ~ 72599398 (+)
G542742 NA non-coding upstream 36119 72596373 ~ 72596662 (+)
G542741 NA non-coding upstream 36800 72595744 ~ 72595981 (+)
G542250 NA non-coding upstream 177430 72448348 ~ 72455351 (+)
G542202 NA non-coding upstream 257181 72375273 ~ 72375600 (+)
LOC110526531 LOC106587514 non-coding downstream 69900 72708156 ~ 72815720 (+)
G542860 NA non-coding downstream 77952 72716302 ~ 72721047 (+)
G542891 NA non-coding downstream 128561 72766911 ~ 72767323 (+)
G542894 NA non-coding downstream 140685 72779035 ~ 72780214 (+)
G542898 NA non-coding downstream 154868 72793218 ~ 72793696 (+)
G542100 LOC106587475 other upstream 480387 72151020 ~ 72152394 (+)
G542053 NA other upstream 530307 72101380 ~ 72102474 (+)
G541903 NA other upstream 828319 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 2011307 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 2078861 70551763 ~ 70558098 (+)
G542890 NA other downstream 127331 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 400271 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 734455 73190979 ~ 73392251 (+)
G544565 NA other downstream 1649428 74287778 ~ 74288138 (+)

Expression


Co-expression Network