saa (saa)


Basic Information

Item Value
gene id saa
gene name saa
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72665460 ~ 72666872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124436.1
ACAAAACACAAGGGAGTTCAAACTGcctgactgactaactaactaagGAGCTAGAAGTTTGTCGCATCTGCAAGTATGAAGCTGCTTCTAGCTGGACTTGTTCTGACCCTCGTTGTAGGAGCTCAAGCTCAGTGGTACCGCTTCCCTGGTGAAGCTGCTCAAGGTGCTAAAGACATGTGGCGTGCATATGGCGACATGAAGGACGCCAACTGGAAAAACTCAGACAAGTACTTTCACGCTCGGGGCAACTATGATGCTGCCAGGAGAGGACCAGGGGGCAGGTGGGCAGCAACAGTCATCAGtaatgGCCGGGAGATGATTCAGGGTTCCAATGGTCGAGGACACGAGGACTCAGCAGCTGACCAGAAGGCTAACCACTGGGGACGTAATGGAGGGGACCCCAACCGATTCAGACCCCAAGGACTCCCCAAGAACTACTGAACCTACAAAAAGGAGGTTACTAGCCAAACTGAAGGACCAAATTCCAAACAAACATATTGCACTTAATTACTGCTTTTGGTAAAAATGTCATATTCTCAAAAATGATTTCTGCTAATAGACAGGTACATGGTACTGAAACATAGTATACAATGTATTTCAAAAGTGTTGCAAAAATAAAGTGATTACACAACCAGA
>TU614654
GGGAATTCCAGCTTTTGGAAAAACAGAACTCCTCCCTGGTCTGAGTGGAATATAAGAACAAGCTGCAGACCACAAACCAACACAAAACACAAGGGAGTTCAAACTGcctgactgactaactaactaagGAGCTAGAAGTTTGTCGCATCTGCAAGTATGAAGCTGCTTCTAGCTGGACTTGTTCTGACCCTCGTTGTAGGAGCTCAAGCTCAGTGGTACCGCTTCCCTGGTGAAGCTGCTCAAGGTGCTAAAGACATGTGGCGTGCATATGGCGACATGAAGGACGCCAACTGGAAAAACTCAGACAAGTACTTTCACGCTCGGGGCAACTATGATGCTGCCAGGAGAGGACCAGGGGGCAGGTGGGCAGCAACAGTCATCAGtaatgGCCGGGAGATGATTCAGGGTTCCAATGGTCGAGGACACGAGGACTCAGCAGCTGACCAGAAGGCTAACCACTGGGGACGTAATGGAGGGGACCCCAACCGATTCAGACCCCAAGGACTCCCCAAGAACTACTGAACCTACAAAAAGGAGGTTACTAGCCAAACTGAAGGACCAAATTCCAAACAAACATATTGCACTTAATTACTGCTTTTGGTAAAAATGTCATATTCTCAAAAATGATTTCTGCTAATAGACAGGTACATGGTACTGAAACATAGTATACAATGTATTTCAAAAGTGTTGCAAAAATAAAGTGATTACACAACCAGAGACCGAatgtctttctgtattcagtaTGATATGACTGGGAAGGTTGGAAAGAAATGTTGAAATCCTGAAATGTACACTCAAATGATCTGGTGTTGACATTTTCCCAGTCTTCAACTGGCAACCGGTCAGCCCTTTACAACTAGAAAGAGGAACTTTTGGACA

Function

symbol description
saa Acts upstream of with a positive effect on neutrophil chemotaxis. Acts upstream of with a negative effect on neutrophil-mediated killing of bacterium. Acts upstream of or within with a positive effect on cell maturation. Acts upstream of or within neutrophil migration and response to bacterium. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle. Is expressed in liver. Orthologous to several human genes including SAA2 (serum amyloid A2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006953 acute-phase response biological_process
GO:0009617 response to bacterium biological_process
GO:0034364 high-density lipoprotein particle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124436.1 False 636 mRNA 0.46 4 72665541 72666710
TU614654 True 879 TUCP 0.45 4 72665460 72666872

Neighbor

gene id symbol gene type direction distance location
frih frih coding upstream 6638 72654435 ~ 72658903 (+)
LOC110526528 LOC106587490 coding upstream 21853 72641751 ~ 72643688 (+)
LOC110526527 lin7c coding upstream 27191 72632781 ~ 72638350 (+)
LOC110526524 LOC106587487 coding upstream 34160 72613695 ~ 72631381 (+)
LOC110526523 LOC106587484 coding upstream 69935 72570817 ~ 72595606 (+)
LOC110518525 LOC106587448 coding downstream 1155 72667865 ~ 72672678 (+)
LOC118964931 saa coding downstream 22633 72689343 ~ 72690657 (+)
LOC110526530 LOC106587515 coding downstream 25078 72691788 ~ 72702243 (+)
LOC110526531 LOC106587514 coding downstream 41446 72708156 ~ 72815720 (+)
LOC110526532 LOC106562322 coding downstream 159887 72826597 ~ 72830480 (+)
G542781 NA non-coding upstream 66143 72599155 ~ 72599398 (+)
G542742 NA non-coding upstream 68879 72596373 ~ 72596662 (+)
G542741 NA non-coding upstream 69560 72595744 ~ 72595981 (+)
G542250 NA non-coding upstream 210190 72448348 ~ 72455351 (+)
G542202 NA non-coding upstream 289941 72375273 ~ 72375600 (+)
G542860 NA non-coding downstream 49592 72716302 ~ 72721047 (+)
G542891 NA non-coding downstream 100201 72766911 ~ 72767323 (+)
G542894 NA non-coding downstream 112325 72779035 ~ 72780214 (+)
G542898 NA non-coding downstream 126508 72793218 ~ 72793696 (+)
G542100 LOC106587475 other upstream 513147 72151020 ~ 72152394 (+)
G542053 NA other upstream 563067 72101380 ~ 72102474 (+)
G541903 NA other upstream 861079 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 2044067 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 2111621 70551763 ~ 70558098 (+)
G542890 NA other downstream 98971 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 371911 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 706095 73190979 ~ 73392251 (+)
G544565 NA other downstream 1621068 74287778 ~ 74288138 (+)
G545485 NA other downstream 2571090 75237800 ~ 75238164 (+)

Expression


Co-expression Network