LOC110518525 (LOC106587448)


Basic Information

Item Value
gene id LOC110518525
gene name LOC106587448
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72667865 ~ 72672678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980910.1
gtgagtcagaccgacagacagacagagagagagagaaaaagagagacagagagagacagagagatgagctAAGAAATTGTAACACAGAGGAATTGTAACTCAGATCACGTttacagatacacagacagagaaactgCCAAGGTAACTGTGTCTCAGATAGATGGCTGACAAGCAGATCAGtttACCTGCCAAATTGATCAACGGGGGAATTGCTGGACTGATTGGTGTGACATGTGTATTTCCTATTGACCTAGCCAAGACCCGTCTCCAGAACCAGCAAAATGGTTCCCGTCTCTATACCAGCATGTCAGATTGCCTTATCAAGACCATCCAATCAGAGGGGTACTTTGGCATGTACAGAGGTGCTGCTGTGAACCTGACTCTGGTCACTCCAGAGAAGGCCATCAAACTAGCTGCCAATGACTTCTTTAGACAGCACCTGTCCAAGGATGGtcagaagCTTAGCCTGCTGAGGGAGATGCTGGCGGGTTGTGGTGCTGGTACATGTCAGGTCATCATCACCACTCCCATGGAGATGCTAAAGATTCAGTTACAGGATGCAGGGCGGATAGAGGATCAGAGGAAGCTGATGTCCCAGGCTGCAGTTGGGGACCCTGGGGTCCCAGTGGAGTTGAGGTCCCATACAGCAATGCAGCTCACCCGGGAGACGGTAAGAACATCTCTGTACAGCAATGCAGCTTACAAGTGCATGGTAaggacagttgtgtgtgtgtatacatgtatgAGTGTGTATACAGTTGTGTGGTTTTTCCAtgcatcggcaagacagaacagctgcctccggtaagacaaggggtggaggtctgtgtctatttgtcaataacagcaggTGCGCAAATtcaaatattaaggaagtctcgaggttttgcttgcctgaggtacaGTATCTCTTGATAAGCTGTAGAgtacactatttaccaagagagtgttcatctatatttttcgtagctgtctattttccaccacaaaccaatgctggcactaagaccgcactcaacgagctctATAAAgctataagcaaacaagaaaatgctcatccagaggcggtgccCCTAGTGGCCAAGGACTTTAATATAGAAAAACTCAAATCTGTTTTACCTGTTACATGTGCAAGAAGAGAGGAAAAAGACTCTAGACTACCTTTACTCCAAACACAAaaatgcgtacaaagctctccctcgccctccatttggcaaatctgaccataatttcccctcctgattcctgcttacaaacaaaaactaaagcaggaagtaccagtgactcactcaatatggAGGTAGTCAGATTACgcaaattagaggtcgaccgattgtgATTTATCAACAccgatgccgattattggaggaccaaaaaaagccga
>XM_036980909.1
GAATTAGGgttgagagaggagtggaggggaaggATTGATGTGATTGGTCCAGAAGGAGGGTGGCTGTACAGTCATATTCTTCTGAAAGCATGGCTCAATGAATGAACACTCTTCATTTCAGGTAGCCAGCCAACACAACATTGAGTTCTCCTCCACAGCTGACTGAAACTGACAGTTGAACATTGGCTGGTTGACTGAGGTATTATCCATCCATCTTCCACTAATCCATTGTTTTCCTTGCAGATCACGTttacagatacacagacagagaaactgCCAAGGTAACTGTGTCTCAGATAGATGGCTGACAAGCAGATCAGtttACCTGCCAAATTGATCAACGGGGGAATTGCTGGACTGATTGGTGTGACATGTGTATTTCCTATTGACCTAGCCAAGACCCGTCTCCAGAACCAGCAAAATGGTTCCCGTCTCTATACCAGCATGTCAGATTGCCTTATCAAGACCATCCAATCAGAGGGGTACTTTGGCATGTACAGAGGTGCTGCTGTGAACCTGACTCTGGTCACTCCAGAGAAGGCCATCAAACTAGCTGCCAATGACTTCTTTAGACAGCACCTGTCCAAGGATGGtcagaagCTTAGCCTGCTGAGGGAGATGCTGGCGGGTTGTGGTGCTGGTACATGTCAGGTCATCATCACCACTCCCATGGAGATGCTAAAGATTCAGTTACAGGATGCAGGGCGGATAGAGGATCAGAGGAAGCTGATGTCCCAGGCTGCAGTTGGGGACCCTGGGGTCCCAGTGGAGTTGAGGTCCCATACAGCAATGCAGCTCACCCGGGAGACGGTAAGAACATCTCTGTACAGCAATGCAGCTTACAAGTGCATGGTAaggacagttgtgtgtgtgtatacatgtatgAGTGTGTATACAGTTGTGTGGTTTTTCCAtgcatcggcaagacagaacagctgcctccggtaagacaaggggtggaggtctgtgtctatttgtcaataacagcaggTGCGCAAATtcaaatattaaggaagtctcgaggttttgcttgcctgaggtacaGTATCTCTTGATAAGCTGTAGAgtacactatttaccaagagagtgttcatctatatttttcgtagctgtctattttccaccacaaaccaatgctggcactaagaccgcactcaacgagctctATAAAgctataagcaaacaagaaaatgctcatccagaggcggtgccCCTAGTGGCCAAGGACTTTAATATAGAAAAACTCAAATCTGTTTTACCTGTTACATGTGCAAGAAGAGAGGAAAAAGACTCTAGACTACCTTTACTCCAAACACAAaaatgcgtacaaagctctccctcgccctccatttggcaaatctgaccataatttcccctcctgattcctgcttacaaacaaaaactaaagcaggaagtaccagtgactcactcaatatggAGGTAGTCAGATTACgcaaattagaggtcgaccgattgtgATTTATCAACAccgatgccgattattggaggaccaaaaaaagccga
>XM_036980908.1
AATTAGGgttgagagaggagtggaggggaaggATTGATGTGATTGGTCCAGAAGGAGGGTGGCTGTACAGTCATATTCTTCTGAAAGCATGGCTCAATGAATGAACACTCTTCATTTCAGGTAGCCAGCCAACACAACATTGAGGTAAATGCTATTATGCCCAGGGATAAGCCAGATCACGTttacagatacacagacagagaaactgCCAAGGTAACTGTGTCTCAGATAGATGGCTGACAAGCAGATCAGtttACCTGCCAAATTGATCAACGGGGGAATTGCTGGACTGATTGGTGTGACATGTGTATTTCCTATTGACCTAGCCAAGACCCGTCTCCAGAACCAGCAAAATGGTTCCCGTCTCTATACCAGCATGTCAGATTGCCTTATCAAGACCATCCAATCAGAGGGGTACTTTGGCATGTACAGAGGTGCTGCTGTGAACCTGACTCTGGTCACTCCAGAGAAGGCCATCAAACTAGCTGCCAATGACTTCTTTAGACAGCACCTGTCCAAGGATGGtcagaagCTTAGCCTGCTGAGGGAGATGCTGGCGGGTTGTGGTGCTGGTACATGTCAGGTCATCATCACCACTCCCATGGAGATGCTAAAGATTCAGTTACAGGATGCAGGGCGGATAGAGGATCAGAGGAAGCTGATGTCCCAGGCTGCAGTTGGGGACCCTGGGGTCCCAGTGGAGTTGAGGTCCCATACAGCAATGCAGCTCACCCGGGAGACGGTAAGAACATCTCTGTACAGCAATGCAGCTTACAAGTGCATGGTAaggacagttgtgtgtgtgtatacatgtatgAGTGTGTATACAGTTGTGTGGTTTTTCCAtgcatcggcaagacagaacagctgcctccggtaagacaaggggtggaggtctgtgtctatttgtcaataacagcaggTGCGCAAATtcaaatattaaggaagtctcgaggttttgcttgcctgaggtacaGTATCTCTTGATAAGCTGTAGAgtacactatttaccaagagagtgttcatctatatttttcgtagctgtctattttccaccacaaaccaatgctggcactaagaccgcactcaacgagctctATAAAgctataagcaaacaagaaaatgctcatccagaggcggtgccCCTAGTGGCCAAGGACTTTAATATAGAAAAACTCAAATCTGTTTTACCTGTTACATGTGCAAGAAGAGAGGAAAAAGACTCTAGACTACCTTTACTCCAAACACAAaaatgcgtacaaagctctccctcgccctccatttggcaaatctgaccataatttcccctcctgattcctgcttacaaacaaaaactaaagcaggaagtaccagtgactcactcaatatggAGGTAGTCAGATTACgcaaattagaggtcgaccgattgtgATTTATCAACAccgatgccgattattggaggaccaaaaaaagccg
>XM_036980907.1
TTAGGgttgagagaggagtggaggggaaggATTGATGTGATTGGTCCAGAAGGAGGGTGGCTGTACAGTCATATTCTTCTGAAAGCATGGCTCAATGAATGAACACTCTTCATTTCAGGTAGCCAGCCAACACAACATTGAGATCACGTttacagatacacagacagagaaactgCCAAGGTAACTGTGTCTCAGATAGATGGCTGACAAGCAGATCAGtttACCTGCCAAATTGATCAACGGGGGAATTGCTGGACTGATTGGTGTGACATGTGTATTTCCTATTGACCTAGCCAAGACCCGTCTCCAGAACCAGCAAAATGGTTCCCGTCTCTATACCAGCATGTCAGATTGCCTTATCAAGACCATCCAATCAGAGGGGTACTTTGGCATGTACAGAGGTGCTGCTGTGAACCTGACTCTGGTCACTCCAGAGAAGGCCATCAAACTAGCTGCCAATGACTTCTTTAGACAGCACCTGTCCAAGGATGGtcagaagCTTAGCCTGCTGAGGGAGATGCTGGCGGGTTGTGGTGCTGGTACATGTCAGGTCATCATCACCACTCCCATGGAGATGCTAAAGATTCAGTTACAGGATGCAGGGCGGATAGAGGATCAGAGGAAGCTGATGTCCCAGGCTGCAGTTGGGGACCCTGGGGTCCCAGTGGAGTTGAGGTCCCATACAGCAATGCAGCTCACCCGGGAGACGGTAAGAACATCTCTGTACAGCAATGCAGCTTACAAGTGCATGGTAaggacagttgtgtgtgtgtatacatgtatgAGTGTGTATACAGTTGTGTGGTTTTTCCAtgcatcggcaagacagaacagctgcctccggtaagacaaggggtggaggtctgtgtctatttgtcaataacagcaggTGCGCAAATtcaaatattaaggaagtctcgaggttttgcttgcctgaggtacaGTATCTCTTGATAAGCTGTAGAgtacactatttaccaagagagtgttcatctatatttttcgtagctgtctattttccaccacaaaccaatgctggcactaagaccgcactcaacgagctctATAAAgctataagcaaacaagaaaatgctcatccagaggcggtgccCCTAGTGGCCAAGGACTTTAATATAGAAAAACTCAAATCTGTTTTACCTGTTACATGTGCAAGAAGAGAGGAAAAAGACTCTAGACTACCTTTACTCCAAACACAAaaatgcgtacaaagctctccctcgccctccatttggcaaatctgaccataatttcccctcctgattcctgcttacaaacaaaaactaaagcaggaagtaccagtgactcactcaatatggAGGTAGTCAGATTACgcaaattagaggtcgaccgattgtgATTTATCAACAccgatgccgattattggaggaccaaaaaaag

Function

NR:

description
PREDICTED: mitochondrial glutamate carrier 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980910.1 False 1384 mRNA 0.46 8 72667865 72672678
XM_036980909.1 False 1524 mRNA 0.46 8 72668987 72672678
XM_036980908.1 False 1455 mRNA 0.46 8 72668988 72672677
XM_036980907.1 True 1419 mRNA 0.46 8 72668990 72672674

Neighbor

gene id symbol gene type direction distance location
saa saa coding upstream 1155 72665460 ~ 72666872 (+)
frih frih coding upstream 8962 72654435 ~ 72658903 (+)
LOC110526528 LOC106587490 coding upstream 24177 72641751 ~ 72643688 (+)
LOC110526527 lin7c coding upstream 29515 72632781 ~ 72638350 (+)
LOC110526524 LOC106587487 coding upstream 36484 72613695 ~ 72631381 (+)
LOC118964931 saa coding downstream 16665 72689343 ~ 72690657 (+)
LOC110526530 LOC106587515 coding downstream 19110 72691788 ~ 72702243 (+)
LOC110526531 LOC106587514 coding downstream 35478 72708156 ~ 72815720 (+)
LOC110526532 LOC106562322 coding downstream 153919 72826597 ~ 72830480 (+)
LOC110526536 LOC106562320 coding downstream 159306 72831984 ~ 72884038 (+)
G542781 NA non-coding upstream 68467 72599155 ~ 72599398 (+)
G542742 NA non-coding upstream 71203 72596373 ~ 72596662 (+)
G542741 NA non-coding upstream 71884 72595744 ~ 72595981 (+)
G542250 NA non-coding upstream 212514 72448348 ~ 72455351 (+)
G542202 NA non-coding upstream 292265 72375273 ~ 72375600 (+)
G542860 NA non-coding downstream 43624 72716302 ~ 72721047 (+)
G542891 NA non-coding downstream 94233 72766911 ~ 72767323 (+)
G542894 NA non-coding downstream 106357 72779035 ~ 72780214 (+)
G542898 NA non-coding downstream 120540 72793218 ~ 72793696 (+)
G542100 LOC106587475 other upstream 515471 72151020 ~ 72152394 (+)
G542053 NA other upstream 565391 72101380 ~ 72102474 (+)
G541903 NA other upstream 863403 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 2046391 70615476 ~ 70621510 (+)
G542890 NA other downstream 93003 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 365943 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 700127 73190979 ~ 73392251 (+)
G544565 NA other downstream 1615100 74287778 ~ 74288138 (+)
G545485 NA other downstream 2565122 75237800 ~ 75238164 (+)

Expression


Co-expression Network