LOC118964931 (saa)


Basic Information

Item Value
gene id LOC118964931
gene name saa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72689343 ~ 72690657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980911.1
AATGTCTCATCTTGTGTTCCCGGGCATACACTTCTGATCGTAATAGCTTGGGAGGACGAAGTTAGGGAATTCCAGCTTTTGGAAAAACAGAACTCCTCCCTGGTCTGAGTGGAATATAAGAACAAGCTGCAGACCACAAACCAACACAAAACACAAGGGAGTTCAAACTGcctgactgactaactaactaagGAGCTAGAAGTTTGTCGCATCTGCAAGTATGAAGCTGCTTCTAGCTGGACTTGTTCTGACCCTCGTTGTAGGAGCTCAAGCTCAGTGGTACCGCTTCCCTGGTGAAGCTGCTCAAGGTGCTAAAGACATGTGGCGTGCATATGGCGACATGAAGGACGCCAACTGGAAAAACTCAGACAAGTACTTTCACGCTCGGGGCAACTATGATGCTGCCAGGAGAGGACCAGGGGGCAGGTGGGCAGCAACAGTCATCAGtaatgGCCGGGAGATGATTCAGGGTTCCAATGGTCGAGGACACGAGGACTCAGCAGCTGACCAGAAGGCTAACCACTGGGGACGTAATGGAGGGGACCCCAACCGATTCAGACCCCAAGGACTCCCCAAGAACTACTGAACCTACAAAAAGGAGGTTACTAGCCAAACTGAAGGACCAAATTCCAAACAAACATATTGCACTTAATTACTGCTTTTGGTAAAAATGTCATATTCTCAAAAATGATTTCTGCTAATAGACAGGTACATGGTACTGAAACATAGTATACAATGTATTTCAAAAGTGTTGCAAAAATAAAGTGATTACACAACCAGA

Function

symbol description
saa Acts upstream of with a positive effect on neutrophil chemotaxis. Acts upstream of with a negative effect on neutrophil-mediated killing of bacterium. Acts upstream of or within with a positive effect on cell maturation. Acts upstream of or within neutrophil migration and response to bacterium. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle. Is expressed in liver. Orthologous to several human genes including SAA2 (serum amyloid A2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006953 acute-phase response biological_process
GO:0009617 response to bacterium biological_process
GO:0034364 high-density lipoprotein particle cellular_component

KEGG:

id description
K17310 SAA; serum amyloid A protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980911.1 True 781 mRNA 0.46 4 72689343 72690657

Neighbor

gene id symbol gene type direction distance location
LOC110518525 LOC106587448 coding upstream 16665 72667865 ~ 72672678 (+)
saa saa coding upstream 22633 72665460 ~ 72666872 (+)
frih frih coding upstream 30440 72654435 ~ 72658903 (+)
LOC110526528 LOC106587490 coding upstream 45655 72641751 ~ 72643688 (+)
LOC110526527 lin7c coding upstream 50993 72632781 ~ 72638350 (+)
LOC110526530 LOC106587515 coding downstream 1131 72691788 ~ 72702243 (+)
LOC110526531 LOC106587514 coding downstream 17499 72708156 ~ 72815720 (+)
LOC110526532 LOC106562322 coding downstream 135940 72826597 ~ 72830480 (+)
LOC110526536 LOC106562320 coding downstream 141327 72831984 ~ 72884038 (+)
LOC110526537 ext2 coding downstream 193820 72884477 ~ 72907006 (+)
G542781 NA non-coding upstream 89945 72599155 ~ 72599398 (+)
G542742 NA non-coding upstream 92681 72596373 ~ 72596662 (+)
G542741 NA non-coding upstream 93362 72595744 ~ 72595981 (+)
G542250 NA non-coding upstream 233992 72448348 ~ 72455351 (+)
G542202 NA non-coding upstream 313743 72375273 ~ 72375600 (+)
G542860 NA non-coding downstream 25645 72716302 ~ 72721047 (+)
G542891 NA non-coding downstream 76254 72766911 ~ 72767323 (+)
G542894 NA non-coding downstream 88378 72779035 ~ 72780214 (+)
G542898 NA non-coding downstream 102561 72793218 ~ 72793696 (+)
G542100 LOC106587475 other upstream 536949 72151020 ~ 72152394 (+)
G542053 NA other upstream 586869 72101380 ~ 72102474 (+)
G541903 NA other upstream 884881 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 2067869 70615476 ~ 70621510 (+)
G542890 NA other downstream 75024 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 347964 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 682148 73190979 ~ 73392251 (+)
G544565 NA other downstream 1597121 74287778 ~ 74288138 (+)
G545485 NA other downstream 2547143 75237800 ~ 75238164 (+)

Expression


Co-expression Network