LOC110526530 (LOC106587515)


Basic Information

Item Value
gene id LOC110526530
gene name LOC106587515
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72691788 ~ 72702243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980916.1
gtgagtcagaccgacagacagacagagagagagagaaaaagagagacagagagagacagagagatgagctAAGAAATTGTAACACAGAGGAATTGTAACTCAGATCACGTttacagatacacagacagagaaactgCCAAGGTAACTGTGTCTCAGATAGATGGCTGACAAGCAGATCAGtttACCTGCCAAATTGATCAACGGGGGAATTGCTGGACTGATTGGTGTGACATGTGTATTTCCTATTGACCTAGCCAAGACCCGTCTCCAGAACCAGCAAAATGGTTCCCGTCTCTATACCAGCATGTCAGATTGCCTTATCAAGACCATCCAATCAGAGGGGTACTTTGGCATGTACAGAGGTGCTGCTGTGAACCTGACTCTGGTCACTCCAGAGAAGGCCATCAAACTAGCTGCCAATGACTTCTTTAGACAGCACCTGTCCAAGGATGGtcagaagCTTAGCCTGCTGAGGGAGATGCTGGCGGGTTGTGGTGCTGGTACATGTCAGGTCATCATCACCACTCCCATGGAGATGCTAAAGATTCAGTTACAGGATGCAGGGCGGATAGAGGCTCAGAGGAAGCTGATGTCCCAGGCTGCAGTTAGGGCCCCTGGGGGCCCAGTGGAGTTGAGGTCCCATACAGCAATGCAGCTCACCCGGGAGCTGCTGAGGAGCCAGGGCATTGCAGGGCTCTACAAGGGCCTGGGGGCCACACTCCTGAGGGACGTGCCATTCTCCATAATCTACTTCCCCCTGTTTGCCAATCTGAACAGTCTTGGTGGCCGTGGGGCTGATGGCCCCGCTCCCTTTTATGTGTCCTTTGCATCAGGCTGCATCGCTGGCAGTACAGCTGCTGTGGCAGTTAATCCTGTGGATGTGATTAAGACCAGAATTCAGACCATGACACGGGGAAGTCAGGAGGACACCTACAACGGAGTGACAGAATGCATCAGGAAGATTCTGCGCCAAGAGGGTCCCTCTGCTTTCCTGAAGGGGGCGTACTGCCGTGCTCTGGTCATTGCTCCCCTCTTTGGCATCGCACAGGTGGTCTACTTCCTGGGAGTGGGAGAGTTCCTTCTCAGCTTCCTGCCTCAACAGAACAACTAGTCTtgcactctcacacacagccCACATTGGAGCCAGGTAATCTGTCACTTTCCTTTCAGACACAGCCCACATTAGCCTAAGCCCTAAGGAgttagtcagagagagacagaacggtGTGTGTGTTCTAGACCAAAGTTTGTTCTCTGCACCTGTTGAGGGTGTTCTGATAGGTCATCATTTATTATATCCCCTACCTGAGATTAATTACAGTAAATATTTACATTTAGGTCTGATTTATAACTATATGATAATAATTCAATATCAATTCAAGTGTACTTTTAGTTGTGCTTTATCAAGGTTTAGTAATGGAATTATCTTTATTGTTTTTACTAAGATGATGCAATCATGATATATAAATCTGTCAAACATGACTGTACTGTAATATCTTCTGTCTGTATTGATGCTATTTTCTGTTGTGgttgttttgcacagcttctgtACCTCTTTCCAAATGGTGTTTCCCTCTTCATCCATAAAGAAGCTTTAGAATTGCATTCTTCTTCCAAGAATGCATTGAGTATTTCATCACAGTGATACTAAGATCTGATCTGAGGTGTATTCACTATTCAGGATTAACAAAGATAACATTAGATGTTGGCAGATGTTGGAAACGATGTACTCAAGCTGTGGGCCTTGAAAGAGTCAACATTGCCTGCAGAAAACGTCACTGGTTGGTGACATTGGTGACTACACACCAAACACAATTAGTTCCCCAGCCACCATGTTGGCACCATTTTGTAACTAGATGTCAGTTCAGGGACCTGCCTGAATTTGTCTGATAGAAACTCTCACTTTCGTGGGCAAAATGTTTTCTGTTTGAAGTAAACGGTTTCTGTtagaaaacattttgcaacagacaaaacattttgcaacagaatctgcgtaatgaatacaccccacgGTTCTGAGAGTGGCAATTCACTCACAGCACTCAGCCAGAGTCAAGTCATCAAATCAAAAAGATAAAAACTCACCCTTGACATTTGTGCAAGCCCATCGCCATTATCATTACTGAAAGGTACATTTGTAGACCCTGTATGACCCTGTATTATAGTAACCTAGATTCTATATTGTGCTGGTTCTTCCCTGGACCATTATTCCCTCTTTTCAGGAGGACAAATGCACGTCCAAGCACTTTTATGTCAccacccctcttccctcccctgtAGATATGGTGGGTGTTGGGTTATCAGTTTGGAGTTGTGAATATGGATGTGCACTGAAGGTGTAAAACAGGCTGACAGCTATTGTATTATTCATTTGAGGTAAAATAAGAACAGAAAAAATGTATTCCTCTCGTATATATTGCTGTCTGAAAAAAATGAATGGGATTGTGCTA
>XM_036980913.1
TAGGgttgagagaggagtggaggggaaggATTGATGTGATTGGTCCAGAAGGAGGGTGGCTGTACAGTCATATTCTTCTGAAAGCATGGCTCAATGAATGAACACTCTTCATTTCAGGTAGCCAGCCAACACAACATTGAGATCACGTttacagatacacagacagagaaactgCCAAGGTAACTGTGTCTCAGATAGATGGCTGACAAGCAGATCAGtttACCTGCCAAATTGATCAACGGGGGAATTGCTGGACTGATTGGTGTGACATGTGTATTTCCTATTGACCTAGCCAAGACCCGTCTCCAGAACCAGCAAAATGGTTCCCGTCTCTATACCAGCATGTCAGATTGCCTTATCAAGACCATCCAATCAGAGGGGTACTTTGGCATGTACAGAGGTGCTGCTGTGAACCTGACTCTGGTCACTCCAGAGAAGGCCATCAAACTAGCTGCCAATGACTTCTTTAGACAGCACCTGTCCAAGGATGGtcagaagCTTAGCCTGCTGAGGGAGATGCTGGCGGGTTGTGGTGCTGGTACATGTCAGGTCATCATCACCACTCCCATGGAGATGCTAAAGATTCAGTTACAGGATGCAGGGCGGATAGAGGCTCAGAGGAAGCTGATGTCCCAGGCTGCAGTTAGGGCCCCTGGGGGCCCAGTGGAGTTGAGGTCCCATACAGCAATGCAGCTCACCCGGGAGCTGCTGAGGAGCCAGGGCATTGCAGGGCTCTACAAGGGCCTGGGGGCCACACTCCTGAGGGACGTGCCATTCTCCATAATCTACTTCCCCCTGTTTGCCAATCTGAACAGTCTTGGTGGCCGTGGGGCTGATGGCCCCGCTCCCTTTTATGTGTCCTTTGCATCAGGCTGCATCGCTGGCAGTACAGCTGCTGTGGCAGTTAATCCTGTGGATGTGATTAAGACCAGAATTCAGACCATGACACGGGGAAGTCAGGAGGACACCTACAACGGAGTGACAGAATGCATCAGGAAGATTCTGCGCCAAGAGGGTCCCTCTGCTTTCCTGAAGGGGGCGTACTGCCGTGCTCTGGTCATTGCTCCCCTCTTTGGCATCGCACAGGTGGTCTACTTCCTGGGAGTGGGAGAGTTCCTTCTCAGCTTCCTGCCTCAACAGAACAACTAGTCTtgcactctcacacacagccCACATTGGAGCCAGGTAATCTGTCACTTTCCTTTCAGACACAGCCCACATTAGCCTAAGCCCTAAGGAgttagtcagagagagacagaacggtGTGTGTGTTCTAGACCAAAGTTTGTTCTCTGCACCTGTTGAGGGTGTTCTGATAGGTCATCATTTATTATATCCCCTACCTGAGATTAATTACAGTAAATATTTACATTTAGGTCTGATTTATAACTATATGATAATAATTCAATATCAATTCAAGTGTACTTTTAGTTGTGCTTTATCAAGGTTTAGTAATGGAATTATCTTTATTGTTTTTACTAAGATGATGCAATCATGATATATAAATCTGTCAAACATGACTGTACTGTAATATCTTCTGTCTGTATTGATGCTATTTTCTGTTGTGgttgttttgcacagcttctgtACCTCTTTCCAAATGGTGTTTCCCTCTTCATCCATAAAGAAGCTTTAGAATTGCATTCTTCTTCCAAGAATGCATTGAGTATTTCATCACAGTGATACTAAGATCTGATCTGAGGTGTATTCACTATTCAGGATTAACAAAGATAACATTAGATGTTGGCAGATGTTGGAAACGATGTACTCAAGCTGTGGGCCTTGAAAGAGTCAACATTGCCTGCAGAAAACGTCACTGGTTGGTGACATTGGTGACTACACACCAAACACAATTAGTTCCCCAGCCACCATGTTGGCACCATTTTGTAACTAGATGTCAGTTCAGGGACCTGCCTGAATTTGTCTGATAGAAACTCTCACTTTCGTGGGCAAAATGTTTTCTGTTTGAAGTAAACGGTTTCTGTtagaaaacattttgcaacagacaaaacattttgcaacagaatctgcgtaatgaatacaccccacgGTTCTGAGAGTGGCAATTCACTCACAGCACTCAGCCAGAGTCAAGTCATCAAATCAAAAAGATAAAAACTCACCCTTGACATTTGTGCAAGCCCATCGCCATTATCATTACTGAAAGGTACATTTGTAGACCCTGTATGACCCTGTATTATAGTAACCTAGATTCTATATTGTGCTGGTTCTTCCCTGGACCATTATTCCCTCTTTTCAGGAGGACAAATGCACGTCCAAGCACTTTTATGTCAccacccctcttccctcccctgtAGATATGGTGGGTGTTGGGTTATCAGTTTGGAGTTGTGAATATGGATGTGCACTGAAGGTGTAAAACAGGCTGACAGCTATTGTATTATTCATTTGAGGTAAAATAAGAACAGAAAAAATGTATTCCTCTCGTATATATTGCTGTCTGAAAAAAATGAATGGGATTGTGCTA
>XM_036980915.1
GgttgagagaggagtggaggggaaggATTGATGTGATTGGTCCAGAAGGAGGGTGGCTGTACAGTCATATTCTTCTGAAAGCATGGCTCAATGAATGAACACTCTTCATTTCAGGTAGCCAGCCAACACAACATTGAGTTCTCCTCCACAGCTGACTGAAACTGACAGTTGAACATTGGCTGGTTGACTGAGGTATTATCCATCCATCTTCCACTAATCCATTGTTTTCCTTGCAGATCACGTttacagatacacagacagagaaactgCCAAGGTAACTGTGTCTCAGATAGATGGCTGACAAGCAGATCAGtttACCTGCCAAATTGATCAACGGGGGAATTGCTGGACTGATTGGTGTGACATGTGTATTTCCTATTGACCTAGCCAAGACCCGTCTCCAGAACCAGCAAAATGGTTCCCGTCTCTATACCAGCATGTCAGATTGCCTTATCAAGACCATCCAATCAGAGGGGTACTTTGGCATGTACAGAGGTGCTGCTGTGAACCTGACTCTGGTCACTCCAGAGAAGGCCATCAAACTAGCTGCCAATGACTTCTTTAGACAGCACCTGTCCAAGGATGGtcagaagCTTAGCCTGCTGAGGGAGATGCTGGCGGGTTGTGGTGCTGGTACATGTCAGGTCATCATCACCACTCCCATGGAGATGCTAAAGATTCAGTTACAGGATGCAGGGCGGATAGAGGCTCAGAGGAAGCTGATGTCCCAGGCTGCAGTTAGGGCCCCTGGGGGCCCAGTGGAGTTGAGGTCCCATACAGCAATGCAGCTCACCCGGGAGCTGCTGAGGAGCCAGGGCATTGCAGGGCTCTACAAGGGCCTGGGGGCCACACTCCTGAGGGACGTGCCATTCTCCATAATCTACTTCCCCCTGTTTGCCAATCTGAACAGTCTTGGTGGCCGTGGGGCTGATGGCCCCGCTCCCTTTTATGTGTCCTTTGCATCAGGCTGCATCGCTGGCAGTACAGCTGCTGTGGCAGTTAATCCTGTGGATGTGATTAAGACCAGAATTCAGACCATGACACGGGGAAGTCAGGAGGACACCTACAACGGAGTGACAGAATGCATCAGGAAGATTCTGCGCCAAGAGGGTCCCTCTGCTTTCCTGAAGGGGGCGTACTGCCGTGCTCTGGTCATTGCTCCCCTCTTTGGCATCGCACAGGTGGTCTACTTCCTGGGAGTGGGAGAGTTCCTTCTCAGCTTCCTGCCTCAACAGAACAACTAGTCTtgcactctcacacacagccCACATTGGAGCCAGGTAATCTGTCACTTTCCTTTCAGACACAGCCCACATTAGCCTAAGCCCTAAGGAgttagtcagagagagacagaacggtGTGTGTGTTCTAGACCAAAGTTTGTTCTCTGCACCTGTTGAGGGTGTTCTGATAGGTCATCATTTATTATATCCCCTACCTGAGATTAATTACAGTAAATATTTACATTTAGGTCTGATTTATAACTATATGATAATAATTCAATATCAATTCAAGTGTACTTTTAGTTGTGCTTTATCAAGGTTTAGTAATGGAATTATCTTTATTGTTTTTACTAAGATGATGCAATCATGATATATAAATCTGTCAAACATGACTGTACTGTAATATCTTCTGTCTGTATTGATGCTATTTTCTGTTGTGgttgttttgcacagcttctgtACCTCTTTCCAAATGGTGTTTCCCTCTTCATCCATAAAGAAGCTTTAGAATTGCATTCTTCTTCCAAGAATGCATTGAGTATTTCATCACAGTGATACTAAGATCTGATCTGAGGTGTATTCACTATTCAGGATTAACAAAGATAACATTAGATGTTGGCAGATGTTGGAAACGATGTACTCAAGCTGTGGGCCTTGAAAGAGTCAACATTGCCTGCAGAAAACGTCACTGGTTGGTGACATTGGTGACTACACACCAAACACAATTAGTTCCCCAGCCACCATGTTGGCACCATTTTGTAACTAGATGTCAGTTCAGGGACCTGCCTGAATTTGTCTGATAGAAACTCTCACTTTCGTGGGCAAAATGTTTTCTGTTTGAAGTAAACGGTTTCTGTtagaaaacattttgcaacagacaaaacattttgcaacagaatctgcgtaatgaatacaccccacgGTTCTGAGAGTGGCAATTCACTCACAGCACTCAGCCAGAGTCAAGTCATCAAATCAAAAAGATAAAAACTCACCCTTGACATTTGTGCAAGCCCATCGCCATTATCATTACTGAAAGGTACATTTGTAGACCCTGTATGACCCTGTATTATAGTAACCTAGATTCTATATTGTGCTGGTTCTTCCCTGGACCATTATTCCCTCTTTTCAGGAGGACAAATGCACGTCCAAGCACTTTTATGTCAccacccctcttccctcccctgtAGATATGGTGGGTGTTGGGTTATCAGTTTGGAGTTGTGAATATGGATGTGCACTGAAGGTGTAAAACAGGCTGACAGCTATTGTATTATTCATTTGAGGTAAAATAAGAACAGAAAAAATGTATTCCTCTCGTATATATTGCTGTCTGAAAAAAATGAATGGGATTGTGCTA
>XM_036980914.1
gttgagagaggagtggaggggaaggATTGATGTGATTGGTCCAGAAGGAGGGTGGCTGTACAGTCATATTCTTCTGAAAGCATGGCTCAATGAATGAACACTCTTCATTTCAGGTAGCCAGCCAACACAACATTGAGGTAAATGCTATTATGCCCAGGGATAAGCCAGATCACGTttacagatacacagacagagaaactgCCAAGGTAACTGTGTCTCAGATAGATGGCTGACAAGCAGATCAGtttACCTGCCAAATTGATCAACGGGGGAATTGCTGGACTGATTGGTGTGACATGTGTATTTCCTATTGACCTAGCCAAGACCCGTCTCCAGAACCAGCAAAATGGTTCCCGTCTCTATACCAGCATGTCAGATTGCCTTATCAAGACCATCCAATCAGAGGGGTACTTTGGCATGTACAGAGGTGCTGCTGTGAACCTGACTCTGGTCACTCCAGAGAAGGCCATCAAACTAGCTGCCAATGACTTCTTTAGACAGCACCTGTCCAAGGATGGtcagaagCTTAGCCTGCTGAGGGAGATGCTGGCGGGTTGTGGTGCTGGTACATGTCAGGTCATCATCACCACTCCCATGGAGATGCTAAAGATTCAGTTACAGGATGCAGGGCGGATAGAGGCTCAGAGGAAGCTGATGTCCCAGGCTGCAGTTAGGGCCCCTGGGGGCCCAGTGGAGTTGAGGTCCCATACAGCAATGCAGCTCACCCGGGAGCTGCTGAGGAGCCAGGGCATTGCAGGGCTCTACAAGGGCCTGGGGGCCACACTCCTGAGGGACGTGCCATTCTCCATAATCTACTTCCCCCTGTTTGCCAATCTGAACAGTCTTGGTGGCCGTGGGGCTGATGGCCCCGCTCCCTTTTATGTGTCCTTTGCATCAGGCTGCATCGCTGGCAGTACAGCTGCTGTGGCAGTTAATCCTGTGGATGTGATTAAGACCAGAATTCAGACCATGACACGGGGAAGTCAGGAGGACACCTACAACGGAGTGACAGAATGCATCAGGAAGATTCTGCGCCAAGAGGGTCCCTCTGCTTTCCTGAAGGGGGCGTACTGCCGTGCTCTGGTCATTGCTCCCCTCTTTGGCATCGCACAGGTGGTCTACTTCCTGGGAGTGGGAGAGTTCCTTCTCAGCTTCCTGCCTCAACAGAACAACTAGTCTtgcactctcacacacagccCACATTGGAGCCAGGTAATCTGTCACTTTCCTTTCAGACACAGCCCACATTAGCCTAAGCCCTAAGGAgttagtcagagagagacagaacggtGTGTGTGTTCTAGACCAAAGTTTGTTCTCTGCACCTGTTGAGGGTGTTCTGATAGGTCATCATTTATTATATCCCCTACCTGAGATTAATTACAGTAAATATTTACATTTAGGTCTGATTTATAACTATATGATAATAATTCAATATCAATTCAAGTGTACTTTTAGTTGTGCTTTATCAAGGTTTAGTAATGGAATTATCTTTATTGTTTTTACTAAGATGATGCAATCATGATATATAAATCTGTCAAACATGACTGTACTGTAATATCTTCTGTCTGTATTGATGCTATTTTCTGTTGTGgttgttttgcacagcttctgtACCTCTTTCCAAATGGTGTTTCCCTCTTCATCCATAAAGAAGCTTTAGAATTGCATTCTTCTTCCAAGAATGCATTGAGTATTTCATCACAGTGATACTAAGATCTGATCTGAGGTGTATTCACTATTCAGGATTAACAAAGATAACATTAGATGTTGGCAGATGTTGGAAACGATGTACTCAAGCTGTGGGCCTTGAAAGAGTCAACATTGCCTGCAGAAAACGTCACTGGTTGGTGACATTGGTGACTACACACCAAACACAATTAGTTCCCCAGCCACCATGTTGGCACCATTTTGTAACTAGATGTCAGTTCAGGGACCTGCCTGAATTTGTCTGATAGAAACTCTCACTTTCGTGGGCAAAATGTTTTCTGTTTGAAGTAAACGGTTTCTGTtagaaaacattttgcaacagacaaaacattttgcaacagaatctgcgtaatgaatacaccccacgGTTCTGAGAGTGGCAATTCACTCACAGCACTCAGCCAGAGTCAAGTCATCAAATCAAAAAGATAAAAACTCACCCTTGACATTTGTGCAAGCCCATCGCCATTATCATTACTGAAAGGTACATTTGTAGACCCTGTATGACCCTGTATTATAGTAACCTAGATTCTATATTGTGCTGGTTCTTCCCTGGACCATTATTCCCTCTTTTCAGGAGGACAAATGCACGTCCAAGCACTTTTATGTCAccacccctcttccctcccctgtAGATATGGTGGGTGTTGGGTTATCAGTTTGGAGTTGTGAATATGGATGTGCACTGAAGGTGTAAAACAGGCTGACAGCTATTGTATTATTCATTTGAGGTAAAATAAGAACAGAAAAAATGTATTCCTCTCGTATATATTGCTGTCTGAAAAAAATGAATGGGATTGTGCTA

Function

NR:

description
mitochondrial glutamate carrier 1-like

GO: NA

KEGG:

id description
K15107 SLC25A18_22, GC; solute carrier family 25 (mitochondrial glutamate transporter), member 18/22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980916.1 False 2450 mRNA 0.45 11 72691788 72702243
XM_036980913.1 False 2488 mRNA 0.45 11 72692922 72702243
XM_036980915.1 False 2583 mRNA 0.45 11 72692925 72702243
XM_036980914.1 True 2515 mRNA 0.45 11 72692926 72702243

Neighbor

gene id symbol gene type direction distance location
LOC118964931 saa coding upstream 1131 72689343 ~ 72690657 (+)
LOC110518525 LOC106587448 coding upstream 19110 72667865 ~ 72672678 (+)
saa saa coding upstream 25078 72665460 ~ 72666872 (+)
frih frih coding upstream 32885 72654435 ~ 72658903 (+)
LOC110526528 LOC106587490 coding upstream 48100 72641751 ~ 72643688 (+)
LOC110526531 LOC106587514 coding downstream 5913 72708156 ~ 72815720 (+)
LOC110526532 LOC106562322 coding downstream 124354 72826597 ~ 72830480 (+)
LOC110526536 LOC106562320 coding downstream 129741 72831984 ~ 72884038 (+)
LOC110526537 ext2 coding downstream 182234 72884477 ~ 72907006 (+)
LOC110526539 LOC106587506 coding downstream 287763 72990006 ~ 73001543 (+)
G542781 NA non-coding upstream 92390 72599155 ~ 72599398 (+)
G542742 NA non-coding upstream 95126 72596373 ~ 72596662 (+)
G542741 NA non-coding upstream 95807 72595744 ~ 72595981 (+)
G542250 NA non-coding upstream 236437 72448348 ~ 72455351 (+)
G542202 NA non-coding upstream 316188 72375273 ~ 72375600 (+)
G542860 NA non-coding downstream 14059 72716302 ~ 72721047 (+)
G542891 NA non-coding downstream 64668 72766911 ~ 72767323 (+)
G542894 NA non-coding downstream 76792 72779035 ~ 72780214 (+)
G542898 NA non-coding downstream 90975 72793218 ~ 72793696 (+)
G542100 LOC106587475 other upstream 539394 72151020 ~ 72152394 (+)
G542053 NA other upstream 589314 72101380 ~ 72102474 (+)
G541903 NA other upstream 887326 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 2070314 70615476 ~ 70621510 (+)
G542890 NA other downstream 63438 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 336378 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 670562 73190979 ~ 73392251 (+)
G544565 NA other downstream 1585535 74287778 ~ 74288138 (+)
G545485 NA other downstream 2535557 75237800 ~ 75238164 (+)

Expression


Co-expression Network