LOC110526532 (LOC106562322)


Basic Information

Item Value
gene id LOC110526532
gene name LOC106562322
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72826597 ~ 72830480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607580.2
TCCGCTTCTGTTCTGATGTAGCAGCAACAAGCTAGCTGAGTGCTTACCTGAGTTATCAGTTTTTGCATGCAGACTTACATTACAATTATATCACATTTTGAAAGTATAATATTTGTTGACATTTTAATCTGGGTTGGTAATTTCTTTGTTTGCCTTTGGTATTCCGTCCACGCCAGTTTCCCTGCAAGGGGAGGGAATGCTAGCTAGCCATTTAGCGAACGTTCGCTACCTAGCTATTTAGTTCAATATTGCGGTGCTAACTGGGTAACGTTAGCCAGCTGGACTAGCAACATCAATAAAACATAGATGCCCGGAAAGGTGCAAAACATGCACTTTTAGTTATTTCCTTGCCAAGTGTCGATTGCTGAGAGAAAACGTTGCTAACGTAGCCAGAGGCTGCACTGCCAACCCAGGACTCGGGATGGCGGCTAAAGCGGCCGATGGTGGTGGTGCAACTGACCTCATAGACATCTACGACGAGAAGTTCAGTCAAAACAACGGGGAGGAAGGAGATTTTGCAACAACGGCAGAGGCAAGTGATCTTTATGATGACGTGCTCACTGGCTCTGTGAGCCGGGAAAGGAAATTCTCAGAGAACGCTATGCCTCTCAGCAAGGACCAGCCGACGAAAGAGGAGAGCAAACCAGCAATACTGTACACTTACAGTGGAGTGTGGAACAAGAGACTGGCTGTATATGTGGGCAACTTCTCCTGGTGGACCTCCGACAAAGACCTTATTAACGTGGCGCGCACCTTGGGTGTGAAGGACATTGTGGAGATCAAATTTGCTGAGAACAGAGCTAATGGCCAGTCCAGGGGATACGCTGAGGTAGTGGTGGCCACAGAAGAGTCATTGCAGAGGTTGCTGGAGACATTGCCAAATTGTCATGTTAATGGAGAAAAGGTGGACTGCCGCTTTGCCACACGCCAGAATCTTGCCGTGTTTGAAGCCCAGGCTAATAAACGTGTCCCCCAGCGCTCTAACTCAAAGGAGTCGTCAGATACTGGGGATAAAAacacctccatctcccctcctgtGCTCAACCAgaaccactccactgtccctcaCACTATCCACCCCCAACACATTCACAACAAACCTCCCCCTCTGTCAGTCCCATACTTTAGGCTgcctcctcctcttttccctcaTCTTCCCCCAcacatccctcctccccccaTGCCCCACCTTTTCCCTCCACCACCTCTACGTCTCCCCAgccatcctccaccctccctgCATCTCAACCCCGCCTTCTTTCCtccagcacaacatgacaactacagtcaacaacacaacacaccgtACAACCGGCACAGCAGCAGGGACAGTGAAGCGCCCACACCCCAAATGCCAGAGGGAGAGTTTGATGAGCTGATGAACAGAAACAGAGCAATCGCCAGCAGCGCCATCACCAAGGCTGTGTCTGGAGCTACTGCCGGAGACATGCCCCTGGCCATTGAGACGCTTTTGACTGCCATTGCTGTCATCAAGCAGTCAAGAGTGTATGGGGACGAGCGCTGTCGAGCGCTGGTCACCTCTCTGAAAGACTGCCTCTTTTCCATCGAGAGCAAGTCTTACGGCTCCAGGAAAAGACACCGTTCCCGTGACAGAGAACACCGTTCCCGAGATAGAGAGcgggacagggaaagagagcgGGACAGAGGCAGGGAAAGGGAAGAGTCCTACAGCCAGGAATGGGAGGCTGCAGGAATGTCCCGCCGGCACCGAGAACGCTCCCTaagtggggagagagatgggagagaccGGGAGCGTGTTCGGGAACGAGATAGACATAGGGAGCACCGCGAGAGGCACCGCTAGGACATTCTAGGTTGTCTTTGTCACTGTCAGGCTGAGTAGGAGGGGAGGCAGGACTTTATTTCTGCACCAAGCTGCTTAAAAGTCTGGGTTAATGGATGAACTGATGGTGAGACAAAATGAATGtccatagcccccccccccccaaacctacTGCCCCCATCTCCACGTTTCCCTGGTATTCAGCAGCCACCAAGCATTTTACCTTCTAATCTTGGCCATCACCAACCCCCTCTTTCACAGTGATACTGTCTTTGTAATTTTATTTTTGATTATGAATTGACCGTTTCAGGGTTGTGGCTACAACTTGTTTGACACACCTGCATGCACAAAGCAGAAGTACATGTTTTTTATATGTTGAACTGTGTAGTGCTTTTTTTTTCCCTCTTCCCCCTTATTTTGTATCAAATTTGAACTGATTAAAAAAGGCTGTTAAAAT
>XM_021607581.2
CTGAGTTATCAGTTTTTGCATGCAGACTTACATTACAATTATATCACATTTTGAAAGTATAATATTTGTTGACATTTTAATCTGGGTTGGTAATTTCTTTGTTTGCCTTTGGTATTCCGTCCACGCCAGTTTCCCTGCAAGGGGAGGGAATGCTAGCTAGCCATTTAGCGAACGTTCGCTACCTAGCTATTTAGTTCAATATTGCGGTGCTAACTGGGTAACGTTAGCCAGCTGGACTAGCAACATCAATAAAACATAGATGCCCGGAAAGGTGCAAAACATGCACTTTTAGTTATTTCCTTGCCAAGTGTCGATTGCTGAGAGAAAACGTTGCTAACGTAGCCAGAGGCTGCACTGCCAACCCAGGACTCGGGATGGCGGCTAAAGCGGCCGATGGTGGTGGTGCAACTGACCTCATAGACATCTACGACGAGAAGTTCAGTCAAAACAACGGGGAGGAAGGAGATTTTGCAACAACGGCAGAGGCAAGTGATCTTTATGATGACGTGCTCACTGGCTCTGTGAGCCGGGAAAGGAAATTCTCAGAGAACGCTATGCCTCTCAGCAAGGACCAGCCGACGAAAGAGGAGAGCAAACCAGCAATACTGTACACTTACAGTGGAGTGTGGAACAAGAGACTGGCTGTATATGTGGGCAACTTCTCCTGGTGGACCTCCGACAAAGACCTTATTAACGTGGCGCGCACCTTGGGTGTGAAGGACATTGTGGAGATCAAATTTGCTGAGAACAGAGCTAATGGCCAGTCCAGGGGATACGCTGAGGTAGTGGTGGCCACAGAAGAGTCATTGCAGAGGTTGCTGGAGACATTGCCAAATTGTCATGTTAATGGAGAAAAGGTGGACTGCCGCTTTGCCACACGCCAGAATCTTGCCGTGTTTGAAGCCCAGGCTAATAAACGTGTCCCCCAGCGCTCTAACTCAAAGGAGTCGTCAGATACTGGGGATAAAAacacctccatctcccctcctgtGCTCAACCAgaaccactccactgtccctcaCACTATCCACCCCCAACACATTCACAACAAACCTCCCCCTCTGTCAGTCCCATACTTTAGGCTgcctcctcctcttttccctcaTCTTCCCCCAcacatccctcctccccccaTGCCCCACCTTTTCCCTCCACCACCTCTACGTCTCCCCAgccatcctccaccctccctgCATCTCAACCCCGCCTTCTTTCCtccagcacaacatgacaactacagtcaacaacacaacacaccgtACAACCGGCACAGCAGGGACAGTGAAGCGCCCACACCCCAAATGCCAGAGGGAGAGTTTGATGAGCTGATGAACAGAAACAGAGCAATCGCCAGCAGCGCCATCACCAAGGCTGTGTCTGGAGCTACTGCCGGAGACATGCCCCTGGCCATTGAGACGCTTTTGACTGCCATTGCTGTCATCAAGCAGTCAAGAGTGTATGGGGACGAGCGCTGTCGAGCGCTGGTCACCTCTCTGAAAGACTGCCTCTTTTCCATCGAGAGCAAGTCTTACGGCTCCAGGAAAAGACACCGTTCCCGTGACAGAGAACACCGTTCCCGAGATAGAGAGcgggacagggaaagagagcgGGACAGAGGCAGGGAAAGGGAAGAGTCCTACAGCCAGGAATGGGAGGCTGCAGGAATGTCCCGCCGGCACCGAGAACGCTCCCTaagtggggagagagatgggagagaccGGGAGCGTGTTCGGGAACGAGATAGACATAGGGAGCACCGCGAGAGGCACCGCTAGGACATTCTAGGTTGTCTTTGTCACTGTCAGGCTGAGTAGGAGGGGAGGCAGGACTTTATTTCTGCACCAAGCTGCTTAAAAGTCTGGGTTAATGGATGAACTGATGGTGAGACAAAATGAATGtccatagcccccccccccccaaacctacTGCCCCCATCTCCACGTTTCCCTGGTATTCAGCAGCCACCAAGCATTTTACCTTCTAATCTTGGCCATCACCAACCCCCTCTTTCACAGTGATACTGTCTTTGTAATTTTATTTTTGATTATGAATTGACCGTTTCAGGGTTGTGGCTACAACTTGTTTGACACACCTGCATGCACAAAGCAGAAGTACATGTTTTTTATATGTTGAACTGTGTAGTGCTTTTTTTTTCCCTCTTCCCCCTTATTTTGTATCAAATTTGAACTGATTAAAAAAGGCTGTTAAAAT

Function

NR:

description
cleavage and polyadenylation specificity factor subunit 7-like isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607580.2 False 2261 mRNA 0.50 9 72826597 72830480
XM_021607581.2 True 2211 mRNA 0.50 9 72826644 72830480

Neighbor

gene id symbol gene type direction distance location
LOC110526531 LOC106587514 coding upstream 10877 72708156 ~ 72815720 (+)
LOC110526530 LOC106587515 coding upstream 124354 72691788 ~ 72702243 (+)
LOC118964931 saa coding upstream 135940 72689343 ~ 72690657 (+)
LOC110518525 LOC106587448 coding upstream 153919 72667865 ~ 72672678 (+)
saa saa coding upstream 159887 72665460 ~ 72666872 (+)
LOC110526536 LOC106562320 coding downstream 1504 72831984 ~ 72884038 (+)
LOC110526537 ext2 coding downstream 53997 72884477 ~ 72907006 (+)
LOC110526539 LOC106587506 coding downstream 159526 72990006 ~ 73001543 (+)
LOC110525049 LOC106587503 coding downstream 181237 73011717 ~ 73013424 (+)
LOC110526541 rps13 coding downstream 185733 73016213 ~ 73020001 (+)
G542843 sdhaf2 non-coding upstream 165 72823236 ~ 72826432 (+)
G542905 NA non-coding upstream 5626 72819924 ~ 72820971 (+)
G542902 NA non-coding upstream 20993 72805403 ~ 72805604 (+)
G542901 NA non-coding upstream 22412 72803808 ~ 72804185 (+)
G542898 NA non-coding upstream 32901 72793218 ~ 72793696 (+)
G542906 NA non-coding downstream 2024 72832504 ~ 72832731 (+)
G542916 NA non-coding downstream 21168 72851648 ~ 72852100 (+)
G542994 NA non-coding downstream 156776 72987256 ~ 72987462 (+)
G543009 NA non-coding downstream 197720 73028200 ~ 73028554 (+)
G543012 NA non-coding downstream 201047 73031527 ~ 73031864 (+)
G542890 NA other upstream 59746 72765681 ~ 72766851 (+)
G542100 LOC106587475 other upstream 674203 72151020 ~ 72152394 (+)
G542053 NA other upstream 724123 72101380 ~ 72102474 (+)
G541903 NA other upstream 1022135 71800040 ~ 71804462 (+)
LOC110526543 LOC106587517 other downstream 208141 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 542325 73190979 ~ 73392251 (+)
G544565 NA other downstream 1457298 74287778 ~ 74288138 (+)
G545485 NA other downstream 2407320 75237800 ~ 75238164 (+)
G545601 NA other downstream 2591381 75421861 ~ 75422752 (+)

Expression


Co-expression Network