LOC110526537 (ext2)


Basic Information

Item Value
gene id LOC110526537
gene name ext2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72884477 ~ 72907006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980921.1
GTGGCACTACAGCCAGTGCATGCAGAGTAGCCCACGGGTTTCGGACAGGCGAAGAAGGGTTCCACTTCCggaaatcaaatcattcacaCGATAACATCAACAACGTttaattagctagctacctaacgttaaaTGTATAGAAACTATACACGATTGGCTTGCCGCTTAGCTAAGAAGAGGGTATGAATTAACAGTTTGTGATCGACTCTGCACCGGTCAAGCGTGAAGTGGTTGAATGGTCAGGCTCAGCATGTGCGCATCTGGAAAGTACAGTTCACGGGGCCCGGCTCTGATTCCACGGATGAAGACTAAGCACCGCATCTACTACATCACCCTGTTCTCTGTGGTGCTGCTGGGACTCATCGCCACAGGGATGTTCCAGTTCTGGCCACACTCCATCGAATCAACGGCAGACTGGGGCTTGGACCGACGCAGCGTGCACGATGCACCTCTCATCCGACTGCCTGTCTCCAACCCTATTCCTGAGAGAGGGGACCTTAGCTGCCGAATGCACACTTGTTTTGATGTGTATCGATGTGGCTACAACCCTAAGAATAGAATCAAGGTGTACATCTATCCTCTGCAGCGTTTTGTGGATGAGGTAGGAGTGCCCATAAGCAGCACAGGCCTGTCCCGAGAGTACAATAACCTGCTCAGTGCCATCTCCGACAGTGAGTTCTACACTGATGACGTCACCAGGGCATGCCTGTTCGTGCCCTCTATTGATGTGCTCAATCAGAACTCTCTGCGCATCCGGGAGACTGCCCAGGCTCTGGCCATGCTCCCCAGGTGGGACAAAGGGATGAACCACCTTCTGTTCAACATGTTACCTGGAGGACCTCCAGACTACAACACAGCCCTTGATGTACCAAGAGACAGgGCTCTGCTTGCAGGGGGAGGCTTCTCCACGTGGACCTACAGGCAGGGTTATGACGTCAGCATCCCTGTGTACAGCCCTCTGTCTGCAGACGTGGAGCTGCCCGAGAGACAGCCTGGGCCCCGGCGCTACTTCATTCTGTCGTCTCAGACGGCCATCCACCGTGAGTACCGGGCAGAGCTGGAGAGGCTGAAGGAGGAGAACGGCGAGGCTCTGCTCCTCCTGGACAAGTGCAGCAACCTCTCTCAGGGAGTCGCCTCAGCGAGGAAACGCTGCTACAAGGGCCAGGTGTTCGACTACCCCCAGATCCTCCAGGAGTCGTCGTTCTGTGTGGTGCTGCGCGGGGCTCGGCTGGGACAGGCCACCCTCAGTGATGTGCTGCAGGCTGGCTGTGTCCCTGTCATCCTAGCAGACTCATACATCCTGCCCTTCTCTGAGGTCCTCGACTGGAAGAGGGCATCCGTGGTCATTCCAGAGGAGAAGCTCCCAGAGATGTACACCATCTTGAAGAGTATCCCTCACAGGCAGGTGGAGGAGATGCAAAGACAGGCCCGCTGGTTCTGGGACGCTTACTTCAGCTCCATGAAGGCCATCGGCATGACAACGCTTCAGATCATCAATGACCGCATTTACCCCTATGCTGCCTGCACCTACGAACAGTGGAACAACCCCCCTCTGGTGAAGTGGTCGAGTGTGAACAGCCCTCTGTTCCTGCCTCTCATCCCACCGAGGTCCCCAGGATTCACTGCTGTGGTGCTGACCTACGACCGTATCGAGAGCCTCTTCCGGGTCATCACGGAGATCTCCAAGGTTCCCAGCTTGGCCAAGCTACTAGTGGTGTGGAACAACCAGAACAAGAGTCCCCCTGAAGATTCTCTATGGCCGAAGATTGCAGCGCCTCTCAAGGTGGTGCGCACCAAAGAGAACAAGCTCAGCAACCGCTTCTTCCCCTACGACGAGATCGAGACTGAGGCCGTGCTGGCCATCGACGATGACATCATCATGCTGACGTCTGATGAACTGCAGTTTGGCTacgagGTGTGGAGGGAGTTCCCAGACCGGTTGGTGGGGTACCCGGGTCGGCTCCACCTGTGGGACCACGAGATGGGGAAGTGGAAGTACGAGTCCGAGTGGACCAACGAGGTGTCCATGGTTCTGACTGGAGCAGCCTTCTACCACAAGTACTTCAACTACCTGTACACTTACAAGATGCCAGGAGACATCAAGAACTGGGTGGATGCTCATATGAACTGTGAGGATATCGCCATGAACTTCCTGGTGGCCAACATCACCGGCAAAGCCCCCATAAAGGTGACCCCAAGGAAGAAGTTCAAGTGTCCTGAGTGCACAGCCATTGACGGTCTGTCCCTGGACCAGACACACATGGTAGAGAGATCGGAGTGCATCAACAAGTTTGCGTCGGTGTTCGGCACCATGCCCCTGAAGGTAGTGGAACACCGTGCAGACCCAGTCCTCTACAAGGACGACTTCCCAGAGAAGCTCAAGAGTTTCCCCAACATCGGCAGTCTCTGACCGGACAGGGCTGTGGCCCAGCAACCcccagacacccatacataccctgcATCTTCTAGTTCAGGGGAGACATAGAGTTTATCTGTCCATATAGAACTATCTGAAGGTTGTTGTTGATCTCTGTAGGGTGGTGTGGGGTTGGGCGCCTGCATTGTTTCCTTTCCTAAATGCTGATTTGAAGTGGTGAGAGTTTAGGTGTGTGCTCATTGGTTGACTAGACAGAATCCACTGTGCGCTGATGAATCCACTGTGCGACAGAGATGACTAGTCTGTGTATGTCCACTGCTGCTGTATTCGAGTCGGAGGCCCCGTGGGCTCTTtggctgatctgggatcagtgtATATAAATCACAGCAGTGCTAAATTTTAATGTAGCATGGTGAGTCAGGACCGCTGTTTGCCAAGCACAGGGTGAGGGGATGTGTAATATGTTGAACACCCGTAGAGATAATATATCCCATGTCATTTATCTCGAACTGATGAATTTTTTAAAATGATAGATAAACATGGAAAAACAAGGTAGTTTAAGAAGGTGCTTCTCGACAAAGGTCATTTCATGGCATGAGCAATTTTTATTTGTTTAGTGTGAGCACTGCAGAGGTGTATGGTCAGCTTTCTCTGCATAGAGGACATATCGCAAATAATATGTACACTATATATTTACTGCCAATTGTTCTACTGCTAACACTTTTCAAAAGAATGACCGGTATCTGGACATTTTAATTACTTTTTTTAAGTGTTGTGCTGCATAATATATAAACTTTTGCAGTAACATCTAGTCTGGTATAGTAGGGCAGGTACTGTAATTGATGTGGTGACATTGGACTGTCTGCTTCATGGAGATGTAGGCACCAGGTTGTACAACTCCCCAATTCTGAAGTCTTTTTGTTTTAGTCTTCTGTTAGTCTGTGTAGGCTTGCTCATCTCTCTAAAGGAATGTCCTAAGCATTTCAAATTCAAGTCAGCACACTTTTTAAGATGTCAATATTgcctttgttttttgttttttactttCGTAAGGATTGTTTGTGATAAATGTGTCTCTAAATATATTTACTCTGTAAAGAAATTGGAAGAAATACATGCTAAATAAAGATGTTTTTCATGGCCA

Function

symbol description
ext2 Predicted to enable N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity and acetylglucosaminyltransferase activity. Acts upstream of or within several processes, including animal organ development; axon guidance; and proteoglycan biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system and pectoral fin musculature. Used to study hereditary multiple exostoses. Orthologous to human EXT2 (exostosin glycosyltransferase 2).

NR:

description
exostosin-2

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0050650 chondroitin sulfate proteoglycan biosynthetic process biological_process
GO:0042476 odontogenesis biological_process
GO:0051216 cartilage development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030516 regulation of axon extension biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0031227 intrinsic component of endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K02367 EXT2; glucuronyl/N-acetylglucosaminyl transferase EXT2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980921.1 True 3521 mRNA 0.50 15 72884477 72907006

Neighbor

gene id symbol gene type direction distance location
LOC110526536 LOC106562320 coding upstream 439 72831984 ~ 72884038 (+)
LOC110526532 LOC106562322 coding upstream 53997 72826597 ~ 72830480 (+)
LOC110526531 LOC106587514 coding upstream 68757 72708156 ~ 72815720 (+)
LOC110526530 LOC106587515 coding upstream 182234 72691788 ~ 72702243 (+)
LOC118964931 saa coding upstream 193820 72689343 ~ 72690657 (+)
LOC110526539 LOC106587506 coding downstream 83000 72990006 ~ 73001543 (+)
LOC110525049 LOC106587503 coding downstream 104711 73011717 ~ 73013424 (+)
LOC110526541 rps13 coding downstream 109207 73016213 ~ 73020001 (+)
LOC118965112 NA coding downstream 110402 73017408 ~ 73017539 (+)
LOC118965096 NA coding downstream 112049 73019055 ~ 73019257 (+)
G542916 NA non-coding upstream 32377 72851648 ~ 72852100 (+)
G542906 NA non-coding upstream 51746 72832504 ~ 72832731 (+)
G542843 sdhaf2 non-coding upstream 58045 72823236 ~ 72826432 (+)
G542905 NA non-coding upstream 63506 72819924 ~ 72820971 (+)
G542902 NA non-coding upstream 78873 72805403 ~ 72805604 (+)
G542994 NA non-coding downstream 80250 72987256 ~ 72987462 (+)
G543009 NA non-coding downstream 121194 73028200 ~ 73028554 (+)
G543012 NA non-coding downstream 124521 73031527 ~ 73031864 (+)
G543013 NA non-coding downstream 125110 73032116 ~ 73032334 (+)
G543014 NA non-coding downstream 125505 73032511 ~ 73032760 (+)
G542890 NA other upstream 117626 72765681 ~ 72766851 (+)
saa saa other upstream 217605 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 732083 72151020 ~ 72152394 (+)
G542053 NA other upstream 782003 72101380 ~ 72102474 (+)
G541903 NA other upstream 1080015 71800040 ~ 71804462 (+)
LOC110526543 LOC106587517 other downstream 131615 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 465799 73190979 ~ 73392251 (+)
G544565 NA other downstream 1380772 74287778 ~ 74288138 (+)
G545485 NA other downstream 2330794 75237800 ~ 75238164 (+)
G545601 NA other downstream 2514855 75421861 ~ 75422752 (+)

Expression


Co-expression Network