LOC110525049 (LOC106587503)


Basic Information

Item Value
gene id LOC110525049
gene name LOC106587503
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73011717 ~ 73013424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604998.2
GTggacaacattttagagaaatacgttttttgtgcatttggaaaatgtctgtgatcttttgtttcagctaatgaaaaatgggaccaacactctacatgttgtttttatatattttttcattgtaCATGGCTCTGGGCTATTTTATCCATAAACTATCATCATTATGACAATAGAATGATTCAATATAATTAcaatcattctatttctatgattattacatcataatcatcatcattatgAGGGCAGATGTTGTTACATGATGAATGATGACATGTGCATTCTAGTGGATCAAGATTAGCCATCAGTCAACTTCAAATTCAAATATAGCTGCAAGCTTCTGGGGTTCAAGCTTTGGTCACATAGTGCCACCATCAGGACAAATTGGAAACATTGCCAAATTCAATGAATACCAGCGTTGTATTATAATGTAATTTTGATTTGTGCAATTATTTTCAGAGCAAGAGCAATAATAACTTTTTTTTCATGAGTGATCAATGGATTGATCTATCTATAAATTGTCATGGATCAAAGTCCATCTCGTTCATCAATGGCCCCTTCTATAGAGGAGCTCACTGAAGAAATGTCTCAAGTGGTTCAGGTCAGTGAACTCACTGGGATCTCCATGAGCCAGATCATGGCATCCAGAACCTCCTTGGGAACGCCAGTGACTTCTGTTTCCCAACTCCTTGCATCCGTGACATCCTTGCATTCACCAATGCCACCTCTTACTAAAGCTGCTTGGGGCTCCAAGGAACATGACTCTAATGAGATAAGCATTATTAGCCATTTGTCCTCACATTGTGTGGATAAGTCATGGCCTTTTGCAATCTACCCACGCTGTGAGGAACTAATCCAACAAGAAAGAATGCCTCCGCTGGAGAAGTATCCCTCTCCCACCGTGCCAAGGAAGAGATCAAAGAGCCGGGCAATGTCTTCCCTGTCACTGAGGTCAGGGTGCTCTGAACAGACCCTGACCAGTATCCATGAGGAAGATGAGACTAAGGTGGTCCACCTGATCAGCCAGGCTGTGCCTGAGGAGACCCCAATGGAAATAATGGCTGAAGTGGAAAAAGTGGCAAGTAAAGACTCCTCCAATAAGAAGGCCTCCTTCTGGAGGAGACTGAGATGTCTTTGTTGCCTGGGGAAGAAGGAGGCTGCTACTACAAAGAAGACTAAGGTGGAGGTGCATGAGCAGGAGGATGCTGAGGTGACCCGGGATGCTGTTTTCCCTACTGAGATGTCCTTAAAATGCTCAGGAAATGATTGATGCCCTAAATATGAATATTTTAATAAAATCTGAATATTTTAGATGTCAGCCTCTGTGTGACACCtgctcctactctccctctctgccgccagctgtcaccatcattacgtgcAGCCGtgcaatattggactcacctggactccattactctGTAGATTGCCCTTCTATCtatgtctgttcctcagttggttccctgtgtcagcattgtTGTTATGTTCCCCTGTCCAGATGCTGTTTTTGTTTTAATGTCTGTTTTACAGTAAATGTTCACtctctgtacttgcttctcgtttCCAGTGTCGATCCTTACagaatgctctaaccactaaaagaagcatcagggagt

Function

NR:

description
uncharacterized protein LOC110525049

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604998.2 True 1613 mRNA 0.42 2 73011717 73013424

Neighbor

gene id symbol gene type direction distance location
LOC110526539 LOC106587506 coding upstream 10174 72990006 ~ 73001543 (+)
LOC110526537 ext2 coding upstream 104711 72884477 ~ 72907006 (+)
LOC110526536 LOC106562320 coding upstream 127679 72831984 ~ 72884038 (+)
LOC110526532 LOC106562322 coding upstream 181237 72826597 ~ 72830480 (+)
LOC110526531 LOC106587514 coding upstream 195997 72708156 ~ 72815720 (+)
LOC110526541 rps13 coding downstream 2789 73016213 ~ 73020001 (+)
LOC118965112 NA coding downstream 3984 73017408 ~ 73017539 (+)
LOC118965096 NA coding downstream 5631 73019055 ~ 73019257 (+)
LOC118965119 NA coding downstream 6148 73019572 ~ 73019700 (+)
LOC110526543 LOC106587517 coding downstream 24529 73037953 ~ 73182742 (+)
G542994 NA non-coding upstream 24255 72987256 ~ 72987462 (+)
G542916 NA non-coding upstream 159617 72851648 ~ 72852100 (+)
G542906 NA non-coding upstream 178986 72832504 ~ 72832731 (+)
G542843 sdhaf2 non-coding upstream 185285 72823236 ~ 72826432 (+)
G542905 NA non-coding upstream 190746 72819924 ~ 72820971 (+)
G543009 NA non-coding downstream 14776 73028200 ~ 73028554 (+)
G543012 NA non-coding downstream 18103 73031527 ~ 73031864 (+)
G543013 NA non-coding downstream 18692 73032116 ~ 73032334 (+)
G543014 NA non-coding downstream 19087 73032511 ~ 73032760 (+)
G543016 NA non-coding downstream 21690 73035114 ~ 73035455 (+)
G542890 NA other upstream 244866 72765681 ~ 72766851 (+)
saa saa other upstream 344845 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 859323 72151020 ~ 72152394 (+)
G542053 NA other upstream 909243 72101380 ~ 72102474 (+)
G541903 NA other upstream 1207255 71800040 ~ 71804462 (+)
LOC100136290 sox6 other downstream 359381 73190979 ~ 73392251 (+)
G544565 NA other downstream 1274354 74287778 ~ 74288138 (+)
G545485 NA other downstream 2224376 75237800 ~ 75238164 (+)
G545601 NA other downstream 2408437 75421861 ~ 75422752 (+)

Expression


Co-expression Network