Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110526541 |
| gene name | rps13 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 73016213 ~ 73020001 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rps13 | Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleolus. Orthologous to human RPS13 (ribosomal protein S13). |
| description |
|---|
| 40S ribosomal protein S13 |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02953 | RP-S13e, RPS13; small subunit ribosomal protein S13e |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021607593.2 | True | 582 | mRNA | 0.49 | 6 | 73016213 | 73020001 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525049 | LOC106587503 | coding | upstream | 2789 | 73011717 ~ 73013424 (+) |
| LOC110526539 | LOC106587506 | coding | upstream | 14670 | 72990006 ~ 73001543 (+) |
| LOC110526537 | ext2 | coding | upstream | 109207 | 72884477 ~ 72907006 (+) |
| LOC110526536 | LOC106562320 | coding | upstream | 132175 | 72831984 ~ 72884038 (+) |
| LOC110526532 | LOC106562322 | coding | upstream | 185733 | 72826597 ~ 72830480 (+) |
| LOC110526543 | LOC106587517 | coding | downstream | 17952 | 73037953 ~ 73182742 (+) |
| LOC100136290 | sox6 | coding | downstream | 170978 | 73190979 ~ 73392251 (+) |
| LOC110526546 | LOC106587531 | coding | downstream | 596827 | 73616828 ~ 73634948 (+) |
| LOC110526547 | LOC106587501 | coding | downstream | 706126 | 73726127 ~ 73731840 (+) |
| copb1 | copb | coding | downstream | 713796 | 73733797 ~ 73741617 (+) |
| G542994 | NA | non-coding | upstream | 28751 | 72987256 ~ 72987462 (+) |
| G542916 | NA | non-coding | upstream | 164113 | 72851648 ~ 72852100 (+) |
| G542906 | NA | non-coding | upstream | 183482 | 72832504 ~ 72832731 (+) |
| G542843 | sdhaf2 | non-coding | upstream | 189781 | 72823236 ~ 72826432 (+) |
| G542905 | NA | non-coding | upstream | 195242 | 72819924 ~ 72820971 (+) |
| G543009 | NA | non-coding | downstream | 8199 | 73028200 ~ 73028554 (+) |
| G543012 | NA | non-coding | downstream | 11526 | 73031527 ~ 73031864 (+) |
| G543013 | NA | non-coding | downstream | 12115 | 73032116 ~ 73032334 (+) |
| G543014 | NA | non-coding | downstream | 12510 | 73032511 ~ 73032760 (+) |
| G543016 | NA | non-coding | downstream | 15113 | 73035114 ~ 73035455 (+) |
| G542890 | NA | other | upstream | 249362 | 72765681 ~ 72766851 (+) |
| saa | saa | other | upstream | 349341 | 72665460 ~ 72666872 (+) |
| G542100 | LOC106587475 | other | upstream | 863819 | 72151020 ~ 72152394 (+) |
| G542053 | NA | other | upstream | 913739 | 72101380 ~ 72102474 (+) |
| G541903 | NA | other | upstream | 1211751 | 71800040 ~ 71804462 (+) |
| G544565 | NA | other | downstream | 1267777 | 74287778 ~ 74288138 (+) |
| G545485 | NA | other | downstream | 2217799 | 75237800 ~ 75238164 (+) |
| G545601 | NA | other | downstream | 2401860 | 75421861 ~ 75422752 (+) |
