LOC110526546 (LOC106587531)


Basic Information

Item Value
gene id LOC110526546
gene name LOC106587531
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73616828 ~ 73634948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607596.2
CCAGCCAAACTTAGCCTTGTAGAGGGAGAAGTATCCTATTGGGTAGAGGCATGGGATAGAAACATGTGCAAGatgatatagcctacataactctTTCACAGAGGAGAGCTTAGTACAGACAGCAAagttagagagagaaaaatggtATTAATTCAGTTATCATCCCTAGTCTCAGAAGTGTCGCATGGACAGGCTTTCTTAGGTCTGTGTAGTTTACTTATTTCCCTTATTGTTATTTTGCTGATCCGGCAGCTTGTGAAGCAGAGGAGACCACGAGGATTCCCTCCTGGACCGTCACCTATCCCTGTCATAGGGAACATTATGTCTCTAGCAACAGAACCGCACGTCTTTATGAAGAAACAGAGTGAAATCCATGGGCAGATTTTCAGTCTTGATTTGGGAGGCTACTCAGCAGTGGTTCTGAATGGATATGATGCCATCAGAGAATGCCTGTACCACCAGGGTGATGTCTTTTCTGACCGGCCATCGCTGCCTTTATTTATGAAAATGACAAAAATGGGAGGACTTCTGAATGCTAAATTTGGCAATGGATGGATTGAACATCGTCAACTGGCCAGCAACTCCTTTCGTTACTTTGGCAGTTTTCAAAAGCCCCTCGACCAGAAGATCCTGGAAGAGTGCATGTTTTTTGTGGATGCCATCGACGAACACAAAGGGAAACCCTTTAACCCAAAGCACCTGGTGACCAATGCTGTGTCCAACATCACCAACCTCATCATCTTCGGCGAGCGTTTCACGTACGACAACTGTGACTTCCAGCACATGATCGAGATCTTCAGTGAGAATGTGGAGCTGGCTGTCAGTGGCTGGGCCTTCCTTTACAACGCCTTCCCATGGATCGAGTACCTCCCCTTTGGAAAGCACCAGAAGCTGTTCCGCAACGCAGCCAAGGTCTATAACTTCCTGGAGCAGATCATCAGGCGCTTCTCGGAGGGCAGAGTGTGCAACTTCCCGCGCCACTACATTGATGACTACCTGAACAAGTTGGACAAGAGTGCTGGCGACTTGGGCACCCCGTATTCCAGGGAGAACCTAATCTACTCTGTGGGCGAGCTCATCATCGCAGGCACGGAGACCACCACCAACACCCTACGCTGGGCTATGCTCTACATGGCCCTCTACCCCAACATTCAAGAGAAGGTGCATACGGAGCTGGACAGTGTGCTGGGAAGTGAGAAGTCCCCCTCGCTTGCAGACAAAAAGAGGATGCCCTATGTGGAAGCGGTGCTACATGAGGTCCTGCGCTTCTGTAACATTGTGCCCCTGGGCATCTTCCGCGCCACCACTCAGGACACACTGGTGAGCGGCTACAACATCCCCAAAGGCACCATGGTCATCACCAACCTGTACTCTGTGCACTTTGATGAGAAGTATTGGTGCGACCCTGGAACCTTCTCACCACATCGCTTCCTGGACAGCAATGGAAACTTTGTCCGACGGGAAGCTTTCCTACCCTTCTCTCTGGGGAAGCGTCACTGTTTGGGCGAGCATCTGGCCAGGATGGAGATGTTCCTGTTCTTCACCACCATGCTGCAGCGCTTCCACCTGCAGTTCCCCCCCGGCACAGTGCCAAGCCTCACCCCCAAACTGGGCATGACACTGCAGCCGCTGCCTTACTCCATCTGCGCCGTCCGCAGGCAGCAGTGACAGATTCTCAGAAGGCACAGCCcgaaggggtgggggggttgggggTTTAGTCAGAACAGAACAGGGGTCTAGAGCTTGGACTCCTACCCTGTGTTTTACACAGAACTGCTAGAATTCTAAACATCAGCCGATGGTTGTTTCTGAGCAATTGCATGTTTGCACAGCACCATTTGCAAAGTCACAGGATCACCAGAAATGTTACTGGCGAGATCCGGAAATATCAGGTGGAACTTCTCAGTAAGTTTAATCGAGAAGATAAGAAGTGTGAAtatttaaacaatacatgcagaCATATACTATGAATTAATCTTGAATTAGAATTGACTTTTTATCTGTGTCCTTATAATCAAATGTCTCATCTTCCCTGCGGGATTACATCAATGATTGACAGGATGGACCTCTATGATGGTTCACagccctgtcttctctctcacaGCCTGCCTAGATGAGAAATAGGAacattacccactgggcacacactggttgaatcattgttgtttccatgtcatttcaatgaaattacattgaacctacgtggaatagacattgaattgatgcCTATTCCCAGTGGGTAGTTTCAGCTGTTTCTACAGCACAGTGAAAATAAGTAGACTAGCAGCCAGCTTTTCCTAGAAGGCTCTGGACATGGTGTTTAGTCTGGATCAGTGCCATATCAAGCAGTCTGAACTAACAATGAACCCGATCTCTCTAGGGATTCTTCCATGGAAAAGCCTTCTCTCAGAAAGCCACTGCAATATTCGTTGAAAATGTCTTTGTGATGCTGTCCTTTGTGATTTAAGTAAATTTGACTTTTGTCTATTATGGTCATACTTTGTAATAAGAACAATGCCGTTTTGGTACTCCACTTACCTTTCTTACAATGTTTATGGTGTGCCTTTCCTAAGACAAATTCAAGTTAGATATGTTTTATGCCGCTTGTTCTTTTTCTTCAACATGCTGACAGTATTTCTCTCAATAAGTTATAggaaacatttctggagagaaaaCATAGGTCTATCTAAACTACAGTACAGGACTAGTCAGACATGGACTTTTGCAGTGAGCCGGCAGAATGTGTCCAGACTGGGTCGTCCAGGGATACACAGACACTATAAATAATCTTCATGTTGTTGGAGCTGAGCCTGGGAGGGCGTCACCCATTTCCTTAAGTGACCTCTCACTTCTACTCAACAGACCAAAGGGCTAGAAAAAAAACTCAAATGCTGTGCTGTGCATACATCAGACTTACTGGGTAATATTTCATATTGATGTAATGTCTCTGGCTATTTTTGGCACTCAGCATACCTCTAACTACTAACTGCACTTCTCAGAAAGTTATGCTGAGGTAGACAGACTGCCAATTCGCCTGGATGAGCGCCTTGTTTGTGTGCATTGAAACTGTAACATTGCAGTCGTTTCAGCAAACATCAGTGTTCCAACTGTGGTTGTTGGCAGGAGGATCTAAACACTTCAAGGACAAAGTTATAGTACAGTTACATTCAAGGGGATTtttatgccacacacacacacacagttacaattgagtaggtgtgtgtatgtatcaatAAAATTATTTGAGAGAACA

Function

NR:

description
vitamin D 25-hydroxylase-like

GO: NA

KEGG:

id description
K07419 CYP2R1; vitamin D 25-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607596.2 True 3253 mRNA 0.46 5 73616828 73634948

Neighbor

gene id symbol gene type direction distance location
LOC100136290 sox6 coding upstream 224579 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 434086 73037953 ~ 73182742 (+)
LOC110526541 rps13 coding upstream 596827 73016213 ~ 73020001 (+)
LOC110526547 LOC106587501 coding downstream 91179 73726127 ~ 73731840 (+)
copb1 copb coding downstream 98849 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 109951 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 158687 73793635 ~ 73891981 (+)
LOC118965098 NA coding downstream 674092 74309040 ~ 74309094 (+)
G543822 NA non-coding upstream 54235 73562367 ~ 73562593 (+)
G543820 NA non-coding upstream 68624 73547876 ~ 73548204 (+)
G543818 NA non-coding upstream 69085 73547201 ~ 73547743 (+)
G543810 NA non-coding upstream 76082 73540538 ~ 73540746 (+)
G543783 NA non-coding upstream 105888 73510642 ~ 73510940 (+)
G543890 NA non-coding downstream 18 73634966 ~ 73636604 (+)
G543978 NA non-coding downstream 90259 73725207 ~ 73725676 (+)
G543997 NA non-coding downstream 136222 73771170 ~ 73771497 (+)
G544292 NA non-coding downstream 300779 73935727 ~ 73935939 (+)
G542890 NA other upstream 849977 72765681 ~ 72766851 (+)
saa saa other upstream 949956 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1464434 72151020 ~ 72152394 (+)
G544565 NA other downstream 652830 74287778 ~ 74288138 (+)
G545485 NA other downstream 1602852 75237800 ~ 75238164 (+)
G545601 NA other downstream 1786913 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2293280 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3252484 76827001 ~ 77038395 (+)

Expression


Co-expression Network