LOC110526547 (LOC106587501)


Basic Information

Item Value
gene id LOC110526547
gene name LOC106587501
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73726127 ~ 73731840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607597.2
TTTCACATCACATCTGTAATCTACTTGTTTCCCTTTGCACAGACGTCAATAGGAAAAGTAATCCAGCTCTAATCGGTTATCTGAGGCGCTTGTTGGTGGAAAGCTCTATCATCATGTTCCGCAACCAGTATGACAATGATGTCACCGTTTGGAGTCCACAGGGGCGTATTCATCAGATTGAATATGCTATGGAAGCAGTGAAACAAGGATCTGCCACAGTGGGTCTGAAATCTCGCAGTCATGCTGTACTTGTGGCTCTGAAGCGAGCTCAGTCCGAGTTGGCTGCCCATCAGAAGAAAATTCTACACGTCGACAGCCATATTGGCATCTCCATTGCTGGTCTCACTGCTGATGCAAGGCTACTATGCAACTTTATGCGTCAGGAGTGCCTGGACTCCAGGTTCGTGTTTGATCGGCCTCTCCCTGTGTCCCGCTTGGTCACACTAATTGGAAGCAAAACCCAGATCCCTACACAGAGATATGGAAGAAGGCCTTATGGTGTGGGATTACTCATCGCAGGATATGATGATATGGGGCCACACATTTTCCAGACCTGCCCCTCTGCCAACTACTTTGATTGCAAGGCCATGTCCATAGGGGCCCGCTCCCAGTCTGCACGTACCTACCTGGAAAGACATATGGACACTTTTCTCGACTGTGAACTGAATGACCTGGTTCAACATGGCCTCCGGGGACTGAGAGAAACTCTACCTGCAGAACAAGATCTTACCACAAAGAATGTGTCCGTTGGGATTGTTGGCAAGGACATGGAGTTCACCATCTACGATGATGGCGATGTGGCATCATTCCTTGAAGGCCTTGAGGAGAGGCCACAGAGAAGGGTTGCCCAGCCAGATGACGAGGTGGCAGCAGAGAAGCCAGAAGAGCCCATGGAGCTCTGAGATTGAAGTGTGTCCCAGACAGTGTGAAGATGACAACGCTCTTATCCCTGATTCATTCAGTCAGTATTCCACCCACACTCACTTGTAACTGTATCAACATGGAGAACAATTACCATTATACTTATGTATGTTCAAGTCGACTATCTATGATTTCTGTTAACGGTTCAATGTTTGCATATATTTTTTGTCATTAAAGAAAAACCTTTTCTGAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K02725 PSMA1; 20S proteasome subunit alpha 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607597.2 True 1115 mRNA 0.47 10 73726127 73731840

Neighbor

gene id symbol gene type direction distance location
LOC110526546 LOC106587531 coding upstream 91179 73616828 ~ 73634948 (+)
LOC100136290 sox6 coding upstream 333878 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 543385 73037953 ~ 73182742 (+)
LOC118965119 NA coding upstream 706427 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 706870 73019055 ~ 73019257 (+)
copb1 copb coding downstream 1957 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 13059 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 61795 73793635 ~ 73891981 (+)
LOC118965098 NA coding downstream 577200 74309040 ~ 74309094 (+)
LOC118965099 NA coding downstream 579501 74311341 ~ 74311395 (+)
G543978 NA non-coding upstream 451 73725207 ~ 73725676 (+)
G543890 NA non-coding upstream 89523 73634966 ~ 73636604 (+)
G543822 NA non-coding upstream 163534 73562367 ~ 73562593 (+)
G543820 NA non-coding upstream 177923 73547876 ~ 73548204 (+)
G543818 NA non-coding upstream 178384 73547201 ~ 73547743 (+)
G543997 NA non-coding downstream 39330 73771170 ~ 73771497 (+)
G544292 NA non-coding downstream 203887 73935727 ~ 73935939 (+)
G544407 NA non-coding downstream 303640 74035480 ~ 74035734 (+)
G544423 NA non-coding downstream 329025 74060865 ~ 74061122 (+)
G542890 NA other upstream 959276 72765681 ~ 72766851 (+)
saa saa other upstream 1059255 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1573733 72151020 ~ 72152394 (+)
G544565 NA other downstream 555938 74287778 ~ 74288138 (+)
G545485 NA other downstream 1505960 75237800 ~ 75238164 (+)
G545601 NA other downstream 1690021 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2196388 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3155592 76827001 ~ 77038395 (+)

Expression


Co-expression Network