LOC110526572 (LOC106562350)


Basic Information

Item Value
gene id LOC110526572
gene name LOC106562350
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74536945 ~ 74580991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607650.2
GCATGCGTAGTACTGCTGGTTGGAAGGAGGGGGAGGCCATCCATTTCATTTACGAGGCCTGTGCGAACTCCGCATAGAGCGAGCGTCCAAACGTCAAATTGGGATATTCGTCTTTTTACGGTAGACAAACTGGATGCTCGAAATAACAGACATCATCTTCATGGCCTGCCGCGTTAAGTTGTAAAGACATCTGGTCAACATAAAGCGATCTCTTACGCTCTGATGGTACCAGCTGACCAGTGACACCTGCCTGAGGACACCTCCCCCACCCCCTTTACCATGTCTGGGATCCAGGTGCCATGGTTGCCTGGCACAGAGTGTGTAGCCAAGTACAACTTCCAGTCGACGAATGAACAGGACCTGCCTTTCTGTAAAGGAGATGTGTTGACCATAATTGGAGTCACCAGGGATCCCAACTGGTACAAAGCGAAGAACACAGTGGGCAGAGAGGGAACCATCCCAGCTAACTACGTCCAGAAAAGGGAAGGGGTCAAGTCGGGGGGAAAACTCAGTCTTATGCCATGGTTCCATGGTAAGATAACGCGGGAGCAGGCAGagctcctcctctaccccccagAGACTGGTCTGTTCCTGGCGAGGGAGAGCACCAACTACCCTGGGGACTACACCCTGTGTGTCAGCTGTGACGGTAAGGTGGAGCACTACCGCATCATCTACCACAACGGCAAGCTCAGCATCGACGAGGAGGAGTTCTTCCAGAACCTCATGCAGCTGGTGGAGCACTACACTAAAGATGCCGACGGCCTCTGTACCAGACTCATCAAGCCAAAGCTGATGGAGGGAACGGTGGCCGCCCAGGATGAATTCTCCAGGAgcggatGGGCCTTGAACAGAAAGGAACTCAAGCTCATCCAGACCATTGGCAAAGGGGAGTTTGGAGATGTGATGGTGGGGGACTACAGAGGGACCAAGGTGGCAGTGAAGTGCATCAAACACGACGCCACGGCCCAGGCGTTCATTGCTGAGGCCTCCGTCATGACGCAACTGAGGCACAACAACCTGGTTCAGCTGCTGGGCGTGATCGTAGAGGAGAGGGGCAGTCTCTACATCGTCACAGAGTACATGGCCAAGGGCAGTCTAGTGGACTACCTCCGTTCTCGAGGACGGACCGTGCTGGGAGGAGACTGTTTACTCAAATTCTCACTTGACGTATGTGAAGCCATGGAGTACCTGGAGGCCAATAACTTTGTGCACAGAGACCTGGCGGCCCGGAACGTGCTGGTGTCTGACGACAACATCGCCAAGGTCAGTGACTTTGGTCTGACCAAGGAGGCCTCATCCACACAGGACACTGCCAAACTGCCCGTCAAATGGACCTCCCCCGAAGCCCTGCGAGAGAAGAGGTTCTCCACTAAGTCAGACGTGTGGAGTTATGGTATCCTGCTATGGGAGATCTACTCCTTTGGGCGTGTGCCTTACCCCAGAATTcCCCTGAAGGAGGTGGTGCCGCGGGTGGAGAAGGGTTACAAGATGGACGCCCCCGACGGCTGCCCGGTGGTGGTTTACGACGTCATGAAGCAGTGCTGGACCCTGGACGTGGGGCTGCGGCCCTCCTTCCGCATGCTGAGAGACAAGCTGTCACATATCAGAGCCAAGGAGCTCTACCtgtgaggggcagagagggaagaCACAGCAGACTagagcggagggagggagcgtCCAGGCTGGGGGAAACTAACTGAAGCAGGAGCGGAAGTCATCTGCCTGCTTCACCTGTAGACCACACCCTACCTGATACCTGACCTGAGACTGTAGTAAACCCTCCCCTGTGTTACCTTCCCTCTCTACTCTTCTGAAAGaaaggaacagtgtgtgtgtgttgtatagcTTTCTGTCAGCTGGTTGTCTTCCTCTGTTCACTCCATCggcctccctctacccccttccTCCTGTTCTCCCAGTCTCTCCACTGTGGCATTGTCACCACCTCAAACTCTTTTCTGATTTTCTTCTTTTCCAAAACGTGATAATGGGGAGGCTGGCCTTTTCCTCCACATGTTCGTCAGGTGCTctcaatctctcctctctctgtgccatgATCATTCCTGTATCTCTGTGTTGGGTGGTAGTGTGGTGCTGCATGCTGTCTGTCCCTTACCCTCCTGTGTGGGGCCTTGCTTGGGGCCTTGGCTCTGTGCCAAAGTGCCTCCAGTATACAGAGCTCCAGACCCCCTCAGCTTCCAGAACCTACTCCTCCACTCAGACTATTCCGTTTCTATCCCTTTTTTTTATTTCTTGTCTCTGAGGTTGGTTGTTGATTTGCTTTGAAGTTGTCTCCCTCCGGCTCCAGAACAGGTTCTTCTATGTCCGTTAAAGAGAACGTGAACATTTGAGAAGAAAAGAGGCCAGTGCATAAAGAGCCTCAGCCTATCTCCAACTCAACACAGGACTACagaacaggagagggaggagcacTTCTCAACATGGTCGATTCATCATATGTGGGCTTGTTTTATATTtaaatgataaaaaataaaaaaaacttaaagAAGCCACGAAAAGACAGACTGAAGGATATAAGAATGTTTTGGTGTCTGTGTGAAGCGAACGCTGGGGTTGGGTATGTGCATGCTGTGCGAGAGGCCTTGGGTTTAACTGTCAGTGCTTTCAATGTTTAttatgctaccatgattatgaatAAATCATTCCATCTGATTAGTGTGGAAAGAATGTAAACACTGACATCACAGGGAGTGGGGGCTCCCCTCTGAAAGCACCTGGGTACTATTCAGTCATGTGAATGTCCTGGATGATGGAGGTAACAGCAGGGCAGTGGGCCACTGGGGATGCCCTGGGTGTTTGTTCCATATGAAGTGAACCTCGAGTCATTATGCTATTACACACATTCCCACACAGTAAATATTCATTTACACAGAGGTAATACAGCAATTCCACACACTTTACATACCCACTGGGTTCATACATATACTTGGGCCAATGAATCTTATTTGGTTGAACTGTGAATAAGGTATTCTAACTATGGATTGGTCCTGTGGTCTTCAAATcgcattttattggtcacatacacatggttagcagatgttattgcgagtgtagcgaaatgcttgtcagAACCTGTGATTTCACAGATTGAGCCTAAAATAATTCTCACACGCAGCTCTGTTTTAGAATGTAGAAGTGTTTCTGAGGGTGTGATAACAGATATTGCTGATGTGCCAAAAGAGCCTTCAAGGTGTGAAGCTGCAGTGTTCTGTGTCAGCTGACCTGTTTCCATTTCGAATGGTCAGTCAAATAGACTAAAGCTCCTCTCATCATTCAttctcttctccattctctcctctctggAGTGGCTGTTCCTCCACTTGCCTCCAGTGATGTTCTGCTGCGAACAGGGGGCACACAGAATGATTCTGAGCCTGAACTGAGCAGAGCACACAGTCCAGCTCAAAAGGAACAGCTTTACGGGCCTTTTCTGTTCTGTcttgtgtatttttattttttttgtaaagggaaaaaaaaaacatttgattcaaTTA
>XM_021607651.2
AGTCACATTGACTGACTGGTGCCGCGTCTAGGAGGGTCAGCCAATTGATGGGACCAAAGGGTTATTTGACGGGTAGTTTGTCTGAGTTGTTTGTGTTGTGGCCGCTGACAGCTCAGCAAAAACGACAAGGAAAACAGGAAGTGGCTCTGATGGTACCAGCTGACCAGTGACACCTGCCTGAGGACACCTCCCCCACCCCCTTTACCATGTCTGGGATCCAGGTGCCATGGTTGCCTGGCACAGAGTGTGTAGCCAAGTACAACTTCCAGTCGACGAATGAACAGGACCTGCCTTTCTGTAAAGGAGATGTGTTGACCATAATTGGAGTCACCAGGGATCCCAACTGGTACAAAGCGAAGAACACAGTGGGCAGAGAGGGAACCATCCCAGCTAACTACGTCCAGAAAAGGGAAGGGGTCAAGTCGGGGGGAAAACTCAGTCTTATGCCATGGTTCCATGGTAAGATAACGCGGGAGCAGGCAGagctcctcctctaccccccagAGACTGGTCTGTTCCTGGCGAGGGAGAGCACCAACTACCCTGGGGACTACACCCTGTGTGTCAGCTGTGACGGTAAGGTGGAGCACTACCGCATCATCTACCACAACGGCAAGCTCAGCATCGACGAGGAGGAGTTCTTCCAGAACCTCATGCAGCTGGTGGAGCACTACACTAAAGATGCCGACGGCCTCTGTACCAGACTCATCAAGCCAAAGCTGATGGAGGGAACGGTGGCCGCCCAGGATGAATTCTCCAGGAgcggatGGGCCTTGAACAGAAAGGAACTCAAGCTCATCCAGACCATTGGCAAAGGGGAGTTTGGAGATGTGATGGTGGGGGACTACAGAGGGACCAAGGTGGCAGTGAAGTGCATCAAACACGACGCCACGGCCCAGGCGTTCATTGCTGAGGCCTCCGTCATGACGCAACTGAGGCACAACAACCTGGTTCAGCTGCTGGGCGTGATCGTAGAGGAGAGGGGCAGTCTCTACATCGTCACAGAGTACATGGCCAAGGGCAGTCTAGTGGACTACCTCCGTTCTCGAGGACGGACCGTGCTGGGAGGAGACTGTTTACTCAAATTCTCACTTGACGTATGTGAAGCCATGGAGTACCTGGAGGCCAATAACTTTGTGCACAGAGACCTGGCGGCCCGGAACGTGCTGGTGTCTGACGACAACATCGCCAAGGTCAGTGACTTTGGTCTGACCAAGGAGGCCTCATCCACACAGGACACTGCCAAACTGCCCGTCAAATGGACCTCCCCCGAAGCCCTGCGAGAGAAGAGGTTCTCCACTAAGTCAGACGTGTGGAGTTATGGTATCCTGCTATGGGAGATCTACTCCTTTGGGCGTGTGCCTTACCCCAGAATTcCCCTGAAGGAGGTGGTGCCGCGGGTGGAGAAGGGTTACAAGATGGACGCCCCCGACGGCTGCCCGGTGGTGGTTTACGACGTCATGAAGCAGTGCTGGACCCTGGACGTGGGGCTGCGGCCCTCCTTCCGCATGCTGAGAGACAAGCTGTCACATATCAGAGCCAAGGAGCTCTACCtgtgaggggcagagagggaagaCACAGCAGACTagagcggagggagggagcgtCCAGGCTGGGGGAAACTAACTGAAGCAGGAGCGGAAGTCATCTGCCTGCTTCACCTGTAGACCACACCCTACCTGATACCTGACCTGAGACTGTAGTAAACCCTCCCCTGTGTTACCTTCCCTCTCTACTCTTCTGAAAGaaaggaacagtgtgtgtgtgttgtatagcTTTCTGTCAGCTGGTTGTCTTCCTCTGTTCACTCCATCggcctccctctacccccttccTCCTGTTCTCCCAGTCTCTCCACTGTGGCATTGTCACCACCTCAAACTCTTTTCTGATTTTCTTCTTTTCCAAAACGTGATAATGGGGAGGCTGGCCTTTTCCTCCACATGTTCGTCAGGTGCTctcaatctctcctctctctgtgccatgATCATTCCTGTATCTCTGTGTTGGGTGGTAGTGTGGTGCTGCATGCTGTCTGTCCCTTACCCTCCTGTGTGGGGCCTTGCTTGGGGCCTTGGCTCTGTGCCAAAGTGCCTCCAGTATACAGAGCTCCAGACCCCCTCAGCTTCCAGAACCTACTCCTCCACTCAGACTATTCCGTTTCTATCCCTTTTTTTTATTTCTTGTCTCTGAGGTTGGTTGTTGATTTGCTTTGAAGTTGTCTCCCTCCGGCTCCAGAACAGGTTCTTCTATGTCCGTTAAAGAGAACGTGAACATTTGAGAAGAAAAGAGGCCAGTGCATAAAGAGCCTCAGCCTATCTCCAACTCAACACAGGACTACagaacaggagagggaggagcacTTCTCAACATGGTCGATTCATCATATGTGGGCTTGTTTTATATTtaaatgataaaaaataaaaaaaacttaaagAAGCCACGAAAAGACAGACTGAAGGATATAAGAATGTTTTGGTGTCTGTGTGAAGCGAACGCTGGGGTTGGGTATGTGCATGCTGTGCGAGAGGCCTTGGGTTTAACTGTCAGTGCTTTCAATGTTTAttatgctaccatgattatgaatAAATCATTCCATCTGATTAGTGTGGAAAGAATGTAAACACTGACATCACAGGGAGTGGGGGCTCCCCTCTGAAAGCACCTGGGTACTATTCAGTCATGTGAATGTCCTGGATGATGGAGGTAACAGCAGGGCAGTGGGCCACTGGGGATGCCCTGGGTGTTTGTTCCATATGAAGTGAACCTCGAGTCATTATGCTATTACACACATTCCCACACAGTAAATATTCATTTACACAGAGGTAATACAGCAATTCCACACACTTTACATACCCACTGGGTTCATACATATACTTGGGCCAATGAATCTTATTTGGTTGAACTGTGAATAAGGTATTCTAACTATGGATTGGTCCTGTGGTCTTCAAATcgcattttattggtcacatacacatggttagcagatgttattgcgagtgtagcgaaatgcttgtcagAACCTGTGATTTCACAGATTGAGCCTAAAATAATTCTCACACGCAGCTCTGTTTTAGAATGTAGAAGTGTTTCTGAGGGTGTGATAACAGATATTGCTGATGTGCCAAAAGAGCCTTCAAGGTGTGAAGCTGCAGTGTTCTGTGTCAGCTGACCTGTTTCCATTTCGAATGGTCAGTCAAATAGACTAAAGCTCCTCTCATCATTCAttctcttctccattctctcctctctggAGTGGCTGTTCCTCCACTTGCCTCCAGTGATGTTCTGCTGCGAACAGGGGGCACACAGAATGATTCTGAGCCTGAACTGAGCAGAGCACACAGTCCAGCTCAAAAGGAACAGCTTTACGGGCCTTTTCTGTTCTGTcttgtgtatttttattttttttgtaaagggaaaaaaaaaacatttgattcaaTTA

Function

NR:

description
tyrosine-protein kinase CSK

GO: NA

KEGG:

id description
K05728 CSK; c-src tyrosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607650.2 False 3518 mRNA 0.50 13 74536945 74580991
XM_021607651.2 True 3445 mRNA 0.50 13 74537411 74580991

Neighbor

gene id symbol gene type direction distance location
LOC110526571 LOC106562351 coding upstream 509 74509447 ~ 74536436 (+)
LOC110526570 cyp1a3 coding upstream 27913 74505044 ~ 74509032 (+)
LOC110526569 LOC106562354 coding upstream 73131 74443137 ~ 74463814 (+)
LOC110526568 LOC106587550 coding upstream 106268 74395368 ~ 74430677 (+)
LOC110526567 wee1 coding upstream 141908 74389782 ~ 74395037 (+)
LOC110515568 LOC106587555 coding downstream 20523 74601514 ~ 74607809 (+)
LOC110526573 LOC106594537 coding downstream 28400 74609391 ~ 74612035 (+)
LOC110526575 LOC106587557 coding downstream 50028 74631019 ~ 74656748 (+)
LOC110526576 tm2d3 coding downstream 75897 74656888 ~ 74663789 (+)
LOC110526577 LOC106587561 coding downstream 91193 74672184 ~ 74732529 (+)
G544739 NA non-coding upstream 37849 74496090 ~ 74499096 (+)
G544766 NA non-coding upstream 44362 74492278 ~ 74492583 (+)
G544761 NA non-coding upstream 56533 74480158 ~ 74480412 (+)
G544758 NA non-coding upstream 66487 74469982 ~ 74470458 (+)
G544757 NA non-coding upstream 68137 74468264 ~ 74468808 (+)
G544817 NA non-coding downstream 13803 74594794 ~ 74595064 (+)
G544828 NA non-coding downstream 31100 74612091 ~ 74612578 (+)
G544829 NA non-coding downstream 33543 74614534 ~ 74614920 (+)
G544830 NA non-coding downstream 34140 74615131 ~ 74615703 (+)
G544831 NA non-coding downstream 34831 74615822 ~ 74616032 (+)
G544565 NA other upstream 248807 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1149258 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1391598 73037953 ~ 73182742 (+)
G542890 NA other upstream 1770094 72765681 ~ 72766851 (+)
saa saa other upstream 1870073 72665460 ~ 72666872 (+)
G545485 NA other downstream 656809 75237800 ~ 75238164 (+)
G545601 NA other downstream 840870 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1347237 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2306441 76827001 ~ 77038395 (+)
G547884 NA other downstream 2697001 77277992 ~ 77279354 (+)

Expression


Co-expression Network