LOC110515568 (LOC106587555)


Basic Information

Item Value
gene id LOC110515568
gene name LOC106587555
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74601514 ~ 74607809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980963.1
TTATTGACTCAGATATTTGTGCAGCCACGTCCTCTCTTGCTAACCTCCACCCTCAACGCGGAGCTGTCCATTGGCACAGGTGCTGAAACGCGTAGGTTCTCATTCCCTCACAGCGGTGCGAGACTGAGGGTCGAGAGTAAAACATTTGGATGATTGTATTGACTTTATCCATATATTTTTGAGACACCTCGGTGGATGTACATTGATTTACTCAGCTTTCATCAAGAGCGCATCAAAGGTCCACGTTCTGACCCGGTCAGTTAACGGACTCTTAAGAGGGAGAAAGATGGCTTTTATGGTGAAACAAATGGTGGGAGGGCATGTGAAGAACCTGACCGGGGGTTTGACTGAGGAAAAGCCCGAAGGAGAGAAATCGGAAGCCGCAGCGGCAGGAATGACCCAGGAGGAATTTGAACAATATCAACAACAGTTAGAGGAGGAAAAGCAGGAACGAGATGCTAGTTTTGCGCAGAAGAAAGCTGAGCGGGCAACAGTTAGAAGTCACTTCCGGGACAAATACAGACTGCCAAAGAATGAGCTGGATGACACTCAGATCCAGCAGGCGGGGGATGACGTGGAGCTGCCCACAGAGCTAGCCAAGATGATCGCTGATGACAACAAGGAGGAGGCGTCCAAAACGTCTGTCCTGGGCCAGCTGACCAACATCCAGAATGTGGACATGGACCAGCTGAAGGACAAGGCCCAGGCCACTCTGGAAGACCTCAAACAGTCTGCTGAAAAGTGCAATCTCATGTgatctggctggctgactgaattcctgctctctctctctccctcctttacttTCTTTATCTATACAACAAAGGATCTGTGTAAGATATGATCTATGATCATGTACAAACGTTGATAGTCATGTTGCTttgaatacacacacatacagtcaacaCTGcctcacatacacaaacatattGCAGCAGCTCCTGGCCAAGGAATCAGAGTGAACACTGTCTAAGCTGTGGGGGAATCAGAGTAAACACTGTCTAAGCTGTGGGGGAATCAGAGTAAACACTGTCTAAGCTGTGGGGGAATCAGAGTAAACACTGTCTAAGCTGTGGGGGAATCAGAGTAAACACTGTCTAAGCTGTGGGGGAATCAGAGTAAACACTGTCTAAGCTGTGGGGGAATCAGAGTAAACACTGTCTAAACTGTGGGGGAATCAGAGTAAACACTGTCTAAGCTGTGGGGGAATCAGAGTAAACACTGTCTAAGCTGTGGGGGAATCAGAGTAAACACTGTCTAAGCTGTGGGGGAATCAGAGTAAACATATCAACTAGTCATATTAAGAGTAAATCAAACTTTCTTGTCTTGGGTCCACATTCAGTACATTACAAACCAAGTGTCTATCGCAGGTGTAAATGTATTTGCGGTTTGCCTGTTCTGTTGTCCATCTAGTCTATGGTCATTAACTCGTTGGGGCCTTGCTAAGAGACAGCTCGTCCTCTGTGATGCCAACCCATCTAACCTTTCAACTCTAGCCTTTAACCTGTCCTCATATTGACCATGACCTCTCCATCTCAGTGTTGTTTTGTGCTGGTGGTTTGGTGTCGTTTAAACGCTATGATATGCCAAATGCTGTCTTTGAAAATGTCATCCTCTGGCTGAGTGCTGGTCATAGTGTTTAATAAGTACACAAGACTATGAACATATATGAACATATAGTACTTGATATTTGTCTGATTTGTTGTTGTATCTCTAAATAAAGACGCAggtgagagcag

Function

NR:

description
PREDICTED: complexin-3-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
K15295 CPLX3_4; complexin-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980963.1 True 1739 mRNA 0.46 3 74601514 74607809

Neighbor

gene id symbol gene type direction distance location
LOC110526572 LOC106562350 coding upstream 20523 74536945 ~ 74580991 (+)
LOC110526571 LOC106562351 coding upstream 65078 74509447 ~ 74536436 (+)
LOC110526570 cyp1a3 coding upstream 92482 74505044 ~ 74509032 (+)
LOC110526569 LOC106562354 coding upstream 137700 74443137 ~ 74463814 (+)
LOC110526568 LOC106587550 coding upstream 170837 74395368 ~ 74430677 (+)
LOC110526573 LOC106594537 coding downstream 1582 74609391 ~ 74612035 (+)
LOC110526575 LOC106587557 coding downstream 23210 74631019 ~ 74656748 (+)
LOC110526576 tm2d3 coding downstream 49079 74656888 ~ 74663789 (+)
LOC110526577 LOC106587561 coding downstream 64375 74672184 ~ 74732529 (+)
LOC110526579 LOC106562344 coding downstream 169470 74777279 ~ 74795369 (+)
G544817 NA non-coding upstream 6450 74594794 ~ 74595064 (+)
G544739 NA non-coding upstream 102418 74496090 ~ 74499096 (+)
G544766 NA non-coding upstream 108931 74492278 ~ 74492583 (+)
G544761 NA non-coding upstream 121102 74480158 ~ 74480412 (+)
G544758 NA non-coding upstream 131056 74469982 ~ 74470458 (+)
G544828 NA non-coding downstream 4282 74612091 ~ 74612578 (+)
G544829 NA non-coding downstream 6725 74614534 ~ 74614920 (+)
G544830 NA non-coding downstream 7322 74615131 ~ 74615703 (+)
G544831 NA non-coding downstream 8013 74615822 ~ 74616032 (+)
G544832 NA non-coding downstream 8252 74616061 ~ 74616267 (+)
G544565 NA other upstream 313376 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1213827 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1456167 73037953 ~ 73182742 (+)
G542890 NA other upstream 1834663 72765681 ~ 72766851 (+)
saa saa other upstream 1934642 72665460 ~ 72666872 (+)
G545485 NA other downstream 629991 75237800 ~ 75238164 (+)
G545601 NA other downstream 814052 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1320419 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2279623 76827001 ~ 77038395 (+)
G547884 NA other downstream 2670183 77277992 ~ 77279354 (+)

Expression


Co-expression Network