LOC110526573 (LOC106594537)


Basic Information

Item Value
gene id LOC110526573
gene name LOC106594537
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74609391 ~ 74612035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607653.2
CCCCAAACGTTGACGTGTTTTGTAAAGGGGACCACACAGGTCGTGAGTTTCATTAAAtttataaacattttatttatccTGTATGACGAGCAGATTGCCAAAAACGACGTTGCTTCAGAAATGAGTCCCACGAACTCCTCAATGACGACCAATCGTTGACCAGGATTGTAAATGGGAGAGGGGGCAAGGAAAACTTTCCTTTCTTTTTCTGGAAAAGGAGGGGTGTTGTGGGGAAAAGATTAACGAAGCGTGAAGCGTAACTGCAAGAGGGGGACAAAGACACATAGCGAGAGGAAATGCTACAGTGAGAAGAGGCAGTCCTAATGAATTCAACCAAAATAGTATGGAATGGAACATGGAAAATATGAACGTTTTTTAAACCCAAGAAAGTTGGACATATTTTGAAAAACAAGAGTAAAGAGTTATGCTTTCAAACGAGGGCACGAAATGTGGATAGTAGGTGTCCGAACTTTGGACTGCGCATGTGGTCACTTTTTGTTCCATTTTTACTGACACGACTGTGACAGATTTGCGAGGGATAGTATTGCTTTGTTGCGTAGCTGACTCTATGCAAAGGATTTCAACATTTTTACTCATCCGTCCCAGACTGGATTCATTCTACCGCATAAAACGGACTATTATTCCACAACTGTCAAGCGTGtattggagagacagagggacatcTTTAGGTTTGTAGCTAGGCCTACTAAACACAtttatgtttggaccatgaatgCCTACTAAACACATTTATGTTTGGACCATAAACGCCTCATACTAAATGGATTTATTAGTTACATTACGTTTTAAATTCATCATAGACTTGGCTGTCCCGCACTAACTGGAGGAAAATGTGCGCATCGTCGAACTAGAGCTCTCTCCAGCATGAAAAGTTGGTGCAGCGCTCTGGCGCTCTTCTCATCGGTGCTGTTGGCGCTAGATGCCCAGTTAATATGTTGGCAAGCCCTGCTCCGATGCCATGAGGAGGCAGACTGTGAGCTTGCATATAGCCAGTATCTAGCCGCCTGTGAAGGAAACATTAGAGGCACCAGGAGGCAATGCCCCAGCCACTGTATCAACGCGTTGATAAGACTGAATCACACCCGCAACGGTCCTTACCTCGAGAGGTGTGACTGTGGTCAGGACATGGAGTGTAGGGATGCAAAGCGGGCGATTGAGCCATGCCTCCCCCGAAGGTATCCTGGAGACGCGGGGGGGATAGGATGCACAGAGGCCCGTCAACGCTGTGAGGAGGACACTGGCTGCCACTTCTCCCTGACAGCCTACTTGTCTTACTGTGGGCAACTCTTCAATGGCAGGAAATGCTCCTCCAGGTGCAAGGCCACAATACAACAGATGctattcatcccaaatggcatgctGCTAAACCAGTGTGTGTGCGACGGGGTGGAAAGGCCGTTCTGTGAGGTAGTCAAGGAGAACATGAGCAAACTTTGCCAGATTGGAGACCACAGTGTTATTTCAGACCAGGCAGATATGGACGATATGTATGAGGATGAAGACTATGATTCGAAAACAGAGGAGATATATCCGCCTGACTCAAATTCTAGTTCCTCGCAGCTGTCGAGCTATATGGCCTTATTATGCATCACTCTTGCACGGATATTCTTTTGAGACTGAATGTGACCTCTTGTTGTGACCTCTCAGTTGGACAGACAGGACAGTCTGCTCGGGGACGGGTCCAATCTAATgagctttgatttgattttttgatGTAGCGAATACTATTTGCTCCTAGTAATCTCCTATGGGCCTAATTGATTTTTCATATTTTGATGTGATGCCTTAATCTGGGACACAAGAATGGTCAGGACATTCAGACCACCAATTCAGTTTGCAAACTAGGCCTAGGCTACTCATGAAATATCCTAGGTCGAAACTGTTCTGGAGTGTAAAGATCCATAAAGTGATTGTTTAGGGAGAAGTGAACCAAACTTGACTTCATTGTAAGGCTACTCCTCATTGGGCATTGCAGCCATTACTTCTGGGCTACCTTTTAAGCTCTTATGCCTATTTGTTTAGTTTCGTCTCAATGGTCCTTGGAGTGTGGCTTTATTAAGACTTAAGATAAACATTGGACCAGTCCAGTTTCTGTTTGCTTTCCTCTCTATTTTAGGGGCCTCTGCATTGTTGCAGCCATCACACTTCAAATATTTGTAGGGAACTGCCAGTGAACAGACAAGGGTTTGGAATCAAGTAGGCCTAGTTAAATTAGCTGAAGTGCCTCTCCAGCAGCCCCCCTACCCCCCATGACACATCCCCCACTCTTGATAGTTTTATTTAAAATGTCCCCCCACTCTCCCCGTTTAGGGACCCCCTTTCTTTATTGAAAGCAAGAAGTCACCCTTCTCCTTATAGACTGGCCTCTACAAGATGAATGTGGGCTTATGATAGACTTATATGGACAAAAGAAGAGGCACTAGTGTTTTTtctctgaaaaaaaaaaagaaataccaGTTTATTACTATGAACAGCAGTACATAAGCTACTTGTTAATAGGCCTAGTTTAATTTATTATTCATTTCATATAAAGTGTAATGGGTTCCTTTCCAGGGCAGAAACATGCTTGACAGTTAGCCTAGATATTTAGTAAGAAGGGAAAAAAGCTAAGaagttattatttt

Function

NR:

description
growth arrest-specific protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607653.2 True 2645 mRNA 0.44 1 74609391 74612035

Neighbor

gene id symbol gene type direction distance location
LOC110515568 LOC106587555 coding upstream 1582 74601514 ~ 74607809 (+)
LOC110526572 LOC106562350 coding upstream 28400 74536945 ~ 74580991 (+)
LOC110526571 LOC106562351 coding upstream 72955 74509447 ~ 74536436 (+)
LOC110526570 cyp1a3 coding upstream 100359 74505044 ~ 74509032 (+)
LOC110526569 LOC106562354 coding upstream 145577 74443137 ~ 74463814 (+)
LOC110526575 LOC106587557 coding downstream 18984 74631019 ~ 74656748 (+)
LOC110526576 tm2d3 coding downstream 44853 74656888 ~ 74663789 (+)
LOC110526577 LOC106587561 coding downstream 60149 74672184 ~ 74732529 (+)
LOC110526579 LOC106562344 coding downstream 165244 74777279 ~ 74795369 (+)
LOC118965044 LOC106609580 coding downstream 290905 74902940 ~ 74903683 (+)
G544817 NA non-coding upstream 14327 74594794 ~ 74595064 (+)
G544739 NA non-coding upstream 110295 74496090 ~ 74499096 (+)
G544766 NA non-coding upstream 116808 74492278 ~ 74492583 (+)
G544761 NA non-coding upstream 128979 74480158 ~ 74480412 (+)
G544758 NA non-coding upstream 138933 74469982 ~ 74470458 (+)
G544828 NA non-coding downstream 56 74612091 ~ 74612578 (+)
G544829 NA non-coding downstream 2499 74614534 ~ 74614920 (+)
G544830 NA non-coding downstream 3096 74615131 ~ 74615703 (+)
G544831 NA non-coding downstream 3787 74615822 ~ 74616032 (+)
G544832 NA non-coding downstream 4026 74616061 ~ 74616267 (+)
G544565 NA other upstream 321253 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1221704 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1464044 73037953 ~ 73182742 (+)
G542890 NA other upstream 1842540 72765681 ~ 72766851 (+)
saa saa other upstream 1942519 72665460 ~ 72666872 (+)
G545485 NA other downstream 625765 75237800 ~ 75238164 (+)
G545601 NA other downstream 809826 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1316193 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2275397 76827001 ~ 77038395 (+)
G547884 NA other downstream 2665957 77277992 ~ 77279354 (+)

Expression


Co-expression Network