LOC110526575 (LOC106587557)


Basic Information

Item Value
gene id LOC110526575
gene name LOC106587557
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74631019 ~ 74656748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607658.2
CTGATGACAGCGAATAGTAATTTAAAGATGGCGGAGTGCATGGCAGCACGTTTGACCGCGCAAGAGGAGCAGATAGAGCTCCTCACTCGGGAATTTAGCCTCCTACGAGACGGGTTAAATGGTGGTCCAGAGGTCGCCAGCATTCTCGCCAGTTCTCCGGAGTTGGAGAGCTTACGGAGCGAGAATGAGAAGCTCAAATTTCGTCTCGTGCACCTCCGCCGGGGTCTCCAGGAAGAGCTCGCCCTGGAGGGACAGGGCAAGAGGGGCACAAACAAAGGCCAGGAGAAGACAGGGAAACAACAACCAAAGAACCGCAATTATGATAATAATAAGGCAGCAACTCATGAGACTAAACCTGTTGTTGATAAGGAGAAGCCAGAGAACATCAAGAAGGCGGCACAGGGAGGGGTTGGTGGCAGAGAGCTGAAACCTTGGCCTGGCTACATCTCGGAGCGCATGCAGCTGTATGAGGAGCTGAAAAAGGAGAGCGATGCCCTGCTGACCAGGAGAGCTGCAGACAGCCAGCCCATCACTGTGGAGCTGCCAGATGGATGCAGGGTGGAGGGTCAGGCCTGGGTCACTACCCCCTACCAGCTGGCCTGTGGCATCAGTCAGGGCTTAGCTGACAATGCAGTGATTTCCCGGGTGAACGGGGACCTGTGGGACCTGGATAGACCTCTGGAGAAGAGCTGCTCACTGGAGATCCTGCGCTTTGACAATGACGATGCCCAGGCTGTGTACTGGCACTCCAGTGCTCACATCCTTGGTGAGGCCATGGAGCGTTTCTATGGAGGCTGTCTGTGTTATGGACCACCCATTGAGAATGGCTTCTACTATGACATGTTCCTCGAAGGACCCCAGGGTGTGTCGAGTACAGAGTTTGAGTACCTGGAGGCGCTGTGCAAGTCTGTGGTGAAGGAGAAACAGCCCTTCGAGAGGCTGGAGGTCAGCAAGGAGACCCTACTGAAGATGTTCAAGTACAACAAATTCAAGTGTCGCATTCTGAATGAGAAAGTCACCACACCCACTACAACAGTCTACAGATGTGGGCCTCTGATTGACCTGTGTCGTGGGCCCCATGTAAGACATACAGGAAAGATTAAAGCCTTGAAGATCTACAAGAACTCTTCTACGTACTGGGAGGGCCGTTCGGACATGGAGACCCTGCAGCGTATCTATGGCATCTCCTTCCCAGACTCCAAGATGCTGAAAGAGTGGGAACGCTTTCAGGAGGAGGCTAGGAACAGAGACCATCGGAAGATTGGAAAGGAGCAGGAACTGTTTTTTTTCCATGACCTGAGCCCTGGCAGCTGCTTCTTCCTCCCGCGTGGAGCCTACCTATACAACACACTCACTGACTTCATCAGGGAGGAATACTGTAGAAGAGGTTTCCAGGAGGTGGCCTCTCCTAACATCTATAACAGTAAGCTGTGGGAGACTTCAGGCCACTGGCAGCACTACAGCGACAACATGTTCTCCTTCCCAGTGGAGCAGGACGTCTTTGCACTGAAGCCCATGAACTGTCCTGGACACTGTCTGATGTTCAGCCACAGACCTCGGTCATGGAGGGAGCTGCCTCTGAGACTGGCTGATTTCGGGGTGCTCCATAGGAATGAGCTATCAGGGACACTGACCGGCCTTACGAGGGTGCGCCGCTTCCAACAGGATGACGCTCACATCTTCTGCACCATGgaacagATTGAGTCGGAGATGAAGGGCTGTCTGGACTTCCTCCGCTGTGTCTATGATGTCTTTGGCTTCTCTTTCCAGCTGCACCTTTCAACCCGTCCAGAGAAGTACCTAGGAGACATCGCTGTCTGGAACCAGGCTGAGAAGCAACTGGAGAACAGCCTGAATGAGTTTGGGGAACCATGGAAACTAAACCCCGGAGACGGTGCTTTCTATGGGCCCAAGATTGACATTAAGATCAAAGATGCTATTGGCCGGTATCATCAATGTGCAACCATTCAGCTGGACTTCCAGCTTCCCATCCGCTTTAACCTGACCTTTGTGGGGAAGGACGGGGATGACAAAGGGAAGCCGGTCATCATCCACCGGGCCATTCTGGGCTCTGTGGAGAGGATGATAGCCATCCTCACTGAGAACTACGCTGGGAAATGGCCCCTCTGGCTGTCCCCACGTCAGGTGATGTTTGTGCCTGTCAACCCTACCTGTGAAGAATATGCCAAGAGGATGTGTAAACAGTTTGTGGAGGCCGGATTCATGGCAGATGCTGATCTCGACTCCAGTTGCCTCTTAAACAAGAAGATCCGCAACGCCCAGTTAGCCCAGTACAACTTCATCCTGGTGGTCGGTGAGAAAGAGAAGCTGACTAACAGCGTGAACGTACGTACGAGGGACAACAAGGTTCATGGAGAGCTGTCTGTCTCTGAGGTGCTGGCTCGCCTGACCCTGTTGAAAGAGTCACGCTGCCGGAACGCTGAGGAGGAGttctgaggagagagggtgacCACATGGTTCCCAGAAGACAAAATGTTTTATGCCAGATAGTTTTCTCTGTCAACAATAGAAGAACAAAAGAGACATGTTTATGTGAATGCAAGAGGTCTGTGTGGAAAGGATAGACATGGAAAGGGGTAGATTAAATGGATTGACATGTttgaaaaaatattattttcgAATCAACTGACAGACCCTTTCTGTATTTGGAGTAGTTGAATATGTATGTTTCTTTGATTGTCGAATCAATTTGAAAGAATAGTGTCAGGAAGTGAGAAACAATATTGTTGATAATGTATTTGGTACAGTAGTGCAGGGTTTCTTCAAACTAGGTCCTAAGGCCCCCCTGGTTTCCCATTTAGTTTGTTGCCCtagcaccacacagctgattcaaataatcaaagcttttTGAtaagttggttatttgaatcagctgtgtagtgctaaggaaaaaaacaaaacatgtaccCACGGGGGGCCCCCAgcaccgagtttgggaaaccctgcagtAGTGTATGAAAAACCATGCaagaattttttttttacactaatCTGAAGGATAGAATGTGGATGAAGGAAGATGTCATGAGAAttgagggttgagggttgaggttAAGCCAAATAAAACACTTTTGGGAAATATT
>XM_021607659.2
CTGATGACAGCGAATAGTAATTTAAAGATGGCGGAGTGCATGGCAGCACGTTTGACCGCGCAAGAGGAGCAGATAGAGCTCCTCACTCGGGAATTTAGCCTCCTACGAGACGGGTTAAATGGTGGTCCAGAGGTCGCCAGCATTCTCGCCAGTTCTCCGGAGTTGGAGAGCTTACGGAGCGAGAATGAGAAGCTCAAATTTCGTCTCGTGCACCTCCGCCGGGGTCTCCAGGAAGAGCTCGCCCTGGAGGGACAGGGCAAGAGGGGCACAAACAAAGGCCAGGAGAAGACAGGGAAACAACAACCAAAGAACCGCAATTATGATAATAATAAGCTGAAACCTTGGCCTGGCTACATCTCGGAGCGCATGCAGCTGTATGAGGAGCTGAAAAAGGAGAGCGATGCCCTGCTGACCAGGAGAGCTGCAGACAGCCAGCCCATCACTGTGGAGCTGCCAGATGGATGCAGGGTGGAGGGTCAGGCCTGGGTCACTACCCCCTACCAGCTGGCCTGTGGCATCAGTCAGGGCTTAGCTGACAATGCAGTGATTTCCCGGGTGAACGGGGACCTGTGGGACCTGGATAGACCTCTGGAGAAGAGCTGCTCACTGGAGATCCTGCGCTTTGACAATGACGATGCCCAGGCTGTGTACTGGCACTCCAGTGCTCACATCCTTGGTGAGGCCATGGAGCGTTTCTATGGAGGCTGTCTGTGTTATGGACCACCCATTGAGAATGGCTTCTACTATGACATGTTCCTCGAAGGACCCCAGGGTGTGTCGAGTACAGAGTTTGAGTACCTGGAGGCGCTGTGCAAGTCTGTGGTGAAGGAGAAACAGCCCTTCGAGAGGCTGGAGGTCAGCAAGGAGACCCTACTGAAGATGTTCAAGTACAACAAATTCAAGTGTCGCATTCTGAATGAGAAAGTCACCACACCCACTACAACAGTCTACAGATGTGGGCCTCTGATTGACCTGTGTCGTGGGCCCCATGTAAGACATACAGGAAAGATTAAAGCCTTGAAGATCTACAAGAACTCTTCTACGTACTGGGAGGGCCGTTCGGACATGGAGACCCTGCAGCGTATCTATGGCATCTCCTTCCCAGACTCCAAGATGCTGAAAGAGTGGGAACGCTTTCAGGAGGAGGCTAGGAACAGAGACCATCGGAAGATTGGAAAGGAGCAGGAACTGTTTTTTTTCCATGACCTGAGCCCTGGCAGCTGCTTCTTCCTCCCGCGTGGAGCCTACCTATACAACACACTCACTGACTTCATCAGGGAGGAATACTGTAGAAGAGGTTTCCAGGAGGTGGCCTCTCCTAACATCTATAACAGTAAGCTGTGGGAGACTTCAGGCCACTGGCAGCACTACAGCGACAACATGTTCTCCTTCCCAGTGGAGCAGGACGTCTTTGCACTGAAGCCCATGAACTGTCCTGGACACTGTCTGATGTTCAGCCACAGACCTCGGTCATGGAGGGAGCTGCCTCTGAGACTGGCTGATTTCGGGGTGCTCCATAGGAATGAGCTATCAGGGACACTGACCGGCCTTACGAGGGTGCGCCGCTTCCAACAGGATGACGCTCACATCTTCTGCACCATGgaacagATTGAGTCGGAGATGAAGGGCTGTCTGGACTTCCTCCGCTGTGTCTATGATGTCTTTGGCTTCTCTTTCCAGCTGCACCTTTCAACCCGTCCAGAGAAGTACCTAGGAGACATCGCTGTCTGGAACCAGGCTGAGAAGCAACTGGAGAACAGCCTGAATGAGTTTGGGGAACCATGGAAACTAAACCCCGGAGACGGTGCTTTCTATGGGCCCAAGATTGACATTAAGATCAAAGATGCTATTGGCCGGTATCATCAATGTGCAACCATTCAGCTGGACTTCCAGCTTCCCATCCGCTTTAACCTGACCTTTGTGGGGAAGGACGGGGATGACAAAGGGAAGCCGGTCATCATCCACCGGGCCATTCTGGGCTCTGTGGAGAGGATGATAGCCATCCTCACTGAGAACTACGCTGGGAAATGGCCCCTCTGGCTGTCCCCACGTCAGGTGATGTTTGTGCCTGTCAACCCTACCTGTGAAGAATATGCCAAGAGGATGTGTAAACAGTTTGTGGAGGCCGGATTCATGGCAGATGCTGATCTCGACTCCAGTTGCCTCTTAAACAAGAAGATCCGCAACGCCCAGTTAGCCCAGTACAACTTCATCCTGGTGGTCGGTGAGAAAGAGAAGCTGACTAACAGCGTGAACGTACGTACGAGGGACAACAAGGTTCATGGAGAGCTGTCTGTCTCTGAGGTGCTGGCTCGCCTGACCCTGTTGAAAGAGTCACGCTGCCGGAACGCTGAGGAGGAGttctgaggagagagggtgacCACATGGTTCCCAGAAGACAAAATGTTTTATGCCAGATAGTTTTCTCTGTCAACAATAGAAGAACAAAAGAGACATGTTTATGTGAATGCAAGAGGTCTGTGTGGAAAGGATAGACATGGAAAGGGGTAGATTAAATGGATTGACATGTttgaaaaaatattattttcgAATCAACTGACAGACCCTTTCTGTATTTGGAGTAGTTGAATATGTATGTTTCTTTGATTGTCGAATCAATTTGAAAGAATAGTGTCAGGAAGTGAGAAACAATATTGTTGATAATGTATTTGGTACAGTAGTGCAGGGTTTCTTCAAACTAGGTCCTAAGGCCCCCCTGGTTTCCCATTTAGTTTGTTGCCCtagcaccacacagctgattcaaataatcaaagcttttTGAtaagttggttatttgaatcagctgtgtagtgctaaggaaaaaaacaaaacatgtaccCACGGGGGGCCCCCAgcaccgagtttgggaaaccctgcagtAGTGTATGAAAAACCATGCaagaattttttttttacactaatCTGAAGGATAGAATGTGGATGAAGGAAGATGTCATGAGAAttgagggttgagggttgaggttAAGCCAAATAAAACACTTTTGGGAAATATT

Function

NR:

description
threonine--tRNA ligase, cytoplasmic-like isoform X2

GO:

id name namespace
GO:0006435 threonyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004829 threonine-tRNA ligase activity molecular_function

KEGG:

id description
K01868 TARS, thrS; threonyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607658.2 False 3104 mRNA 0.50 19 74631019 74656748
XM_021607659.2 True 3014 mRNA 0.50 18 74631019 74656748

Neighbor

gene id symbol gene type direction distance location
LOC110526573 LOC106594537 coding upstream 18984 74609391 ~ 74612035 (+)
LOC110515568 LOC106587555 coding upstream 23210 74601514 ~ 74607809 (+)
LOC110526572 LOC106562350 coding upstream 50028 74536945 ~ 74580991 (+)
LOC110526571 LOC106562351 coding upstream 94583 74509447 ~ 74536436 (+)
LOC110526570 cyp1a3 coding upstream 121987 74505044 ~ 74509032 (+)
LOC110526576 tm2d3 coding downstream 140 74656888 ~ 74663789 (+)
LOC110526577 LOC106587561 coding downstream 15436 74672184 ~ 74732529 (+)
LOC110526579 LOC106562344 coding downstream 120531 74777279 ~ 74795369 (+)
LOC118965044 LOC106609580 coding downstream 246192 74902940 ~ 74903683 (+)
LOC110526582 LOC106562373 coding downstream 265648 74922396 ~ 75155528 (+)
G544832 NA non-coding upstream 14752 74616061 ~ 74616267 (+)
G544831 NA non-coding upstream 14987 74615822 ~ 74616032 (+)
G544830 NA non-coding upstream 15316 74615131 ~ 74615703 (+)
G544829 NA non-coding upstream 16099 74614534 ~ 74614920 (+)
G544828 NA non-coding upstream 18441 74612091 ~ 74612578 (+)
G544865 NA non-coding downstream 47509 74704257 ~ 74724211 (+)
G545117 NA non-coding downstream 81317 74738065 ~ 74738310 (+)
G545363 NA non-coding downstream 335864 74992612 ~ 74993103 (+)
G545457 NA non-coding downstream 532971 75189719 ~ 75190182 (+)
G544565 NA other upstream 342881 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1243332 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1485672 73037953 ~ 73182742 (+)
G542890 NA other upstream 1864168 72765681 ~ 72766851 (+)
saa saa other upstream 1964147 72665460 ~ 72666872 (+)
G545485 NA other downstream 581052 75237800 ~ 75238164 (+)
G545601 NA other downstream 765113 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1271480 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2230684 76827001 ~ 77038395 (+)
G547884 NA other downstream 2621244 77277992 ~ 77279354 (+)

Expression


Co-expression Network