LOC110526576 (tm2d3)


Basic Information

Item Value
gene id LOC110526576
gene name tm2d3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74656888 ~ 74663789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607660.2
GGGCGGGTCACAAGGCTAAGAAAGGGATTGAAGTTCATTTACGTTGGCACAATGGCTACCGTCAGTCAGATTTGGCCATTTGAGAGAAGACGCTACCTAAAAGCCCATGGCATCACAACACTGTTATTTTTGGATCTATGTTTGCGATGTGTGAATGGGTACCTGAGCTCCCCACACGTGGGCCAGGAGCCCCCTTACAGCCGAGATGCTCAGCCAGTCATCACCAGCCCGGTGGTTCCTTCTCCATCTGCATCTCCAACTGATTCAGATGGCTATGCTGCCAACTGCCCCAGTGGGGGTCAATGCAACAGACTGCCTGCTGACTGCTTCAACTGCAGCTATCATCACAACTGTAGCTATGGCAAACCAGCGTCTTTCTCTTGCAAGGCCAAGAGAGGAGTCCACTGCACAGTGGAGTCGGGGAAGCAGCAGACCAACTTCTCCCTGTCCATCACGTGCCAGTTCTGCTGGCAGCTGGACCTGTCTCAGTACAGGTGCTCCAACTCAACCAGCTGTAGGACCGTTGCCTGCCCTCGCAAACGCTACAACGCCACCTGCCAAGTACTGGACCACGTACACTGCTTAGGTAAAAGAGTATTTCAGAAACGTTTGTACTGCAACTGGACAGGAGGGTACAAGTGGTCTACAGCACTGGCACTCAGCATTACACTAGGTGGATTTGGGGCTGACCGGTTCTATCTAGGCCAGTGGAGAGAGGGTCTGGGCAAGCTGTTCAGTTTCGGTGGCCTGGGCATCTGGACCCTGATTGATGTGCTGCTGATTGGAGCGGGCTATGTGGGGCCAGCCGATGGCTCCCTCTACATCTGAGACCTGTGATTGATGCCCACTCCACAGGCATGATGGTTGTAGAGTTAATACCCTCTCCATTTCAGTTTAGACTGTCTGACTGTAAAGATCCACACCATGGAGATGTCATCCCATTATCACACCATCTGCTTGCCCAAACTCCCACTGTCTGCAAAGACTGACTTCTTGTCCCATCTGCCACCAGTACAGCTTCAAGGTCAGCCTTGTCAGGTCCGCCTCTAGATCATCAAGCCCAAGCATCCTTCACTGATATACTGTAATACAATCTGCACTGAGCATCGTTTTGGAGTTGTTTGGTTAATGGTGATTAGAGTTGGTCAGGCTGATATGGACTGACTGGAgaatgggaggtagggacagTTAAGCAGTGCTTGGAATTATATTATAACAATGGCCACCTATGGTGCTCCATGGTCATGCATAGGAGACCAGTAACCATGGCTACAGAACACAAAATGGACTTATTATTATAATACCGATAACAGAAACAAAAAGTGCTTGGAAGAAAAGCAGTGTTTCTTCCCTGTAGGTTTTGTTAAAGCATGTGGCACCTGCTAAGTGTGGTGGACGGTAATGTGCATCGGTGGATAGCAGATCAACCTTTCAGTGTTCTGTCTGCAAACCAACCAGCAAAAGAATACTTGAACGGTTATTTTCTTTGGAGTGTAACATTGCAACATGAATGTCAGATTGCTTGGTTGAAAATGTGGTTGAGATACAGATTTGGGGAAATTCCATGGTTATTATGGCTGGGGCTTATATtgtgtatttatatttattgCATTGTGAATGTGCACcacaggaggctgttgaggggaggacggctcatagcaATGGCTGGAACGGCATTAAacgcatggaaaccatgtgtttgatgtatttgatactgttccgctccagccattaccatgagcccgtcctccccaaccTTCTGTGATGTGCACCAATATGCATATGTCAGATTTCAGCATTAcatggtgtaacggatgtgaaacggctagctagtcagcagtggtgcgcgctaaatagcgtttcaatcggtgatgtcacttgctctgagaccttgaagtagtggttgcCCTTGCTCtacaagggccgcggcttttgtggagcgaggggtaacgatgcttcgtgggtgactgttgtgtgcacagggtccctggttcgcgcccaggtatgggcgaggggacggtctaaagttctACTGTTACAATGGCATTGCGCTACAGCTCTGCATGCCCAAAACACATCTGTTCTCGTAAAGCTGTGCAGGCTTCAACTAGGTCACTAACTGGTTCAGAATGGTTTTAGTACTAGTTTTCAAAGAACTTGAACAGGTTTTTTTCTTCATCACTAATTGCCCAGCCCGAATGGTTACGATATGTAGCCTCCCATATCCAGAGCTTGAGTATGTGTGCTGCACAAACTGGTAACCTATACTTCTGGTGAAAATGTGTTCATGTTCTGGAGGTAGGATTTGTTTTTTTGGAACACTGTAATGACAATGTTTGAGAATTGTAAATATTAAATTTGTGAAATATTA

Function

symbol description
tm2d3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TM2D3 (TM2 domain containing 3).

NR:

description
TM2 domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607660.2 True 2371 mRNA 0.48 6 74656888 74663789

Neighbor

gene id symbol gene type direction distance location
LOC110526575 LOC106587557 coding upstream 140 74631019 ~ 74656748 (+)
LOC110526573 LOC106594537 coding upstream 44853 74609391 ~ 74612035 (+)
LOC110515568 LOC106587555 coding upstream 49079 74601514 ~ 74607809 (+)
LOC110526572 LOC106562350 coding upstream 75897 74536945 ~ 74580991 (+)
LOC110526571 LOC106562351 coding upstream 120452 74509447 ~ 74536436 (+)
LOC110526577 LOC106587561 coding downstream 8395 74672184 ~ 74732529 (+)
LOC110526579 LOC106562344 coding downstream 113490 74777279 ~ 74795369 (+)
LOC118965044 LOC106609580 coding downstream 239151 74902940 ~ 74903683 (+)
LOC110526582 LOC106562373 coding downstream 258607 74922396 ~ 75155528 (+)
LOC110526583 LOC106562374 coding downstream 504779 75168568 ~ 75194690 (+)
G544805 NA non-coding upstream 17700 74616477 ~ 74639188 (+)
G544832 NA non-coding upstream 40621 74616061 ~ 74616267 (+)
G544831 NA non-coding upstream 40856 74615822 ~ 74616032 (+)
G544830 NA non-coding upstream 41185 74615131 ~ 74615703 (+)
G544829 NA non-coding upstream 41968 74614534 ~ 74614920 (+)
G544865 NA non-coding downstream 40468 74704257 ~ 74724211 (+)
G545117 NA non-coding downstream 74276 74738065 ~ 74738310 (+)
G545363 NA non-coding downstream 328823 74992612 ~ 74993103 (+)
G545457 NA non-coding downstream 525930 75189719 ~ 75190182 (+)
G544565 NA other upstream 368750 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1269201 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1511541 73037953 ~ 73182742 (+)
G542890 NA other upstream 1890037 72765681 ~ 72766851 (+)
saa saa other upstream 1990016 72665460 ~ 72666872 (+)
G545485 NA other downstream 574011 75237800 ~ 75238164 (+)
G545601 NA other downstream 758072 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1264439 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2223643 76827001 ~ 77038395 (+)
G547884 NA other downstream 2614203 77277992 ~ 77279354 (+)

Expression


Co-expression Network