LOC110526579 (LOC106562344)


Basic Information

Item Value
gene id LOC110526579
gene name LOC106562344
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74777279 ~ 74795369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607670.2
CTTTTCCTCTTAAATGCCCCAGCCTCCCCAGCTGCGCCTCCTCCAGCTCAGTTTACAAGGCTGTGCATACAGATCAGCAGAGTAGTGGTTTTGGCGTTCACTGCACTACAGGGTCAAGGCGAAACAGCCAGGAGCAGCTACCGTTTTCTACTGGACCTGTCTGAATGCATGACTGAGAGCTGCTGGTCAATAGTTCTTGGCCACATGAGAGAATGCTATCAGGTCTGGCTCTTCTGCTGCTTGTCTGCCTCCTCCACATGTTGGTGACTGCCAAGGGGAACCCGTGGTCACAGAGTCTGGGCTGCGATGAGTACTTGGGCTCAGGCAAGGTGATGGACAAGTGTGGGGTGTGTGGCGGGGACAACACGGCCTGTAAGCTGGTGTCAGGGCTCTTCCAGCAGCACAGCCTGAACAAGGTGGGCTACCACAAGATAGTGGAGATCCCAGAGGGAGCCACCAAGATCAACGTCACCGAGACGGTGAAGAGCAGGAATTACCTGGCTCTGAAAAGCCGCTCAGGTCGCTCCATCATCAATGGGAACTGGGCCATTGACCGGCCAGGGAAGTATGAGGGGGTGGGCACCATGTTCACCTACCGACGACCCAATGAGGTCACCAGCACCGCCGGGGAGTCCTTCCTGGCTGAAGGGCCAACCAATGAGATCCTGGATGTTTATGTGATCTACCAGCAGCCCAACCCAGGAGTGAGCTATGAATTCATCCTTCCCTCTGACAACCCTCCACAGCACCCCAACCACAGACCTGGAGGGAATACTCTGCATGGGCAAAGTGGGATTGACCACCGGGGCAACCCCAACCAGGAGGGGTACGATCCAGCAGGAGGGGGCAAATACCCTCCCCAGGTACCCAACAACCAGGTGCCAGCGGTCCAGCCACCCAAACGTCAGAGAGAATACAACTGGAAACTGTCTGGGGCAACAGAGTGTAGCGCCTCCTGTGGCAGAGGTAGCAGGTACACCATCTTCCGCTGTGTCCACAGACTGAGCCATGAGCAGGTACCAGGGAACCAGTGTGACAGCAGCACCAGGCCCAGTTCACAGGAGGAGCCCTGCAACCTTcagtcctgccctgccttTTGGGACATTGGTGAGTGGTCGGAGTGCAGTAAGACATGTGGCCTGGGTATGCAGCACCGCCAGGTCTTGTGCAGGCAGGTGTATGCCAACCGGACCCTTAACGTCCACACCAGCCGCTGCCGCCACCTGGAGCAGCCCGAGACCACCAGCACCTGCCAGCTGAAAATCTGCAGCGAGTGGCAGATACGAACCGAGTGGAGCGCCTGCTCTGTTCCCTGTGGCGTGGGCCAGAGGACCAGGGAGGTGCACTGTGTCAGCAACATGGGAGACTTTGTGTCAAACGAGGAGTGCAACATGAAGCTGCGACCCAGTGACAATGAGAACTGTGACATGGGGCCCTGTGCTAAAAGTTGGTTCTTCACTGATTGGGGGAATAAGTGTTCTGCTGAGTGTGGGATGGGCATCCGGACCCGTGGCGTTCTGTGCCTGACCAATCACATTAGCAGCTTGCCTCTGGAAGGGTGTGGCCATGAGCGCCCCACTGACTCTCAGGTCTGTAATCACGGCCCCTGTGAGAGTCGCATCGAGTGGTTTACAGCCCCCTGGAGTCAGTGTTCAACGGAGTGTGGCTCGGGCAGCCAGCAGAGGGCAGTGGTGTGTCTGATGAAGTCAGACGAGGGGTTCAATGTAATGCCGCCCTACGAATGTTCTTCTCTAGACAAGCCTCTTAATCAGCAGAGTTGCCACCTCAAGCCCTGTGGGGCCATGTGGTACCACACAGACTGGAGCGCTTGTTCTAAGACGTGTGAGGGGGGCTTCCGTGTGAGGGAGGTGCGCTGTCTGTCTGATGACATGCTTTCCAGTGAGGGCTGTGAAGAGGAGCTGAaaccagtggagagagaggagtgcaacCCAGAGCCCTGCGTCCCACACATAGACGAGAACTGTCGAGACAAGTATTTCAACTGCAATGTGGTGGTCCAGGCACGTCTCTGTGTGTACGACTACTACAAGACAACCTGCTGTGCCTCCTGCACACGAGTGGCCCACAGACAGTCACAACACAGGGCACTCAGCTAGCCCCCTCCCCAGGCCTCAGACCTCTAGGGGGCCTGACACAGCGCCCAGAGCAGGCCCTCAGTTCCTGGGCCCAACACACTAACCCACAGTGGAGAGGACAGCCTAGAACCTGACTCTGGGTGGACACTGACTGGACACTATAATATGAGTGCTGAAAATACAGACGGAAAAACTGAAATACCGCAAAGAAAGGAAGTGAAAGCCCAACTTGTTTTTGGCATGTGAGGAGATTGCCAATGGGCAATACGGGAAACTGAATGGTTCGTGGAGGATGGTTGTGAAGGACACGTTTAACAGGGCTATGAGTGGAGGAGCTCTGGTGAGGCGATGATAGACAGGACACCAAACCGAAGAATATGGAACCACTTTATGGTCTGTAACCAGAATCCCCTCCAGTAAAAGTTCCTGTCTGGGTTTTTGTTGTGTTTCACGGGAAGCAGTTTGGCGCTGCCATTCACCTGAATGGGTTAAGGTCTTGAAAAAGGTCTTTGGCCGAAACGTTGATAGAATAAACAACGTGCAGAGGTGATATTGTGTGTGGGACTGCTACCACATCTGTGATGAGACTCTTGACTACCATGGCTCTCTTGGATAGCATTAAAGGAGAGGAAGATACAGTATTAAAGCAGAGCAAGATTCTGTTTGTTTTGCATAATGTATAGACTGTACACATTTTAATAAGCTTCTTTATGCTTTAAAATCCACAATATTTATGATCTAATTAACTACTTGTAGTATGAAGTTGCCCAAGCTTGCTCTTAAATCATCCCAATTATGAGGGCTCTATTCAATACTCTCCTACACAGCAGTTTAGTTGACCAAAGATTTCCCTATTTCACAGGAGGACGTGTCAAACAGTAATTGCTCAGTCCAGATCTATGGCTCTATTTAATCTGTACCGGTGAAGCGTTACAAACGGTGCAATATAAATGTTAAGGTCATTTCTGATTGAGCcaacatatgcagtgtttaccgtgatgcagtctccgctaatacggaacattgcctttaaatttcaatcacgctgtaacaCTGAACTtctgcgatacggattgaatagagccccaaGTGACAGCTCACCAGTTACACAGCAACCCTCTAACAAATTAAGCTCTAAAATGTTCATGTGTCGTTGTAGTGAATCATATATTTTGCATCACTGCTGTgtatatacagaaccagtcaaaagtttggacacatctactcattaaaggatttttctttattttgactattttctacattatagaataatagtgaagacatcaaaactaagaaataac

Function

NR:

description
thrombospondin type-1 domain-containing protein 4-like

GO: NA

KEGG:

id description
K23377 THSD4, ADAMTSL6; thrombospondin type-1 domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607670.2 True 3400 mRNA 0.51 12 74777279 74795369

Neighbor

gene id symbol gene type direction distance location
LOC110526577 LOC106587561 coding upstream 44750 74672184 ~ 74732529 (+)
LOC110526576 tm2d3 coding upstream 113490 74656888 ~ 74663789 (+)
LOC110526575 LOC106587557 coding upstream 120531 74631019 ~ 74656748 (+)
LOC110526573 LOC106594537 coding upstream 165244 74609391 ~ 74612035 (+)
LOC110515568 LOC106587555 coding upstream 169470 74601514 ~ 74607809 (+)
LOC118965044 LOC106609580 coding downstream 107571 74902940 ~ 74903683 (+)
LOC110526582 LOC106562373 coding downstream 127027 74922396 ~ 75155528 (+)
LOC110526583 LOC106562374 coding downstream 373199 75168568 ~ 75194690 (+)
LOC110526584 LOC106587566 coding downstream 521136 75316505 ~ 75324636 (+)
LOC110526588 LOC106562377 coding downstream 598428 75393797 ~ 75408675 (+)
G545117 NA non-coding upstream 38969 74738065 ~ 74738310 (+)
G544865 NA non-coding upstream 53068 74704257 ~ 74724211 (+)
G544805 NA non-coding upstream 138091 74616477 ~ 74639188 (+)
G544832 NA non-coding upstream 161012 74616061 ~ 74616267 (+)
G545363 NA non-coding downstream 197243 74992612 ~ 74993103 (+)
G545457 NA non-coding downstream 394350 75189719 ~ 75190182 (+)
G545460 NA non-coding downstream 402937 75198306 ~ 75198529 (+)
G545462 NA non-coding downstream 404342 75199711 ~ 75204903 (+)
G545464 NA non-coding downstream 410914 75206283 ~ 75206642 (+)
G544565 NA other upstream 489141 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1389592 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1631932 73037953 ~ 73182742 (+)
G542890 NA other upstream 2010428 72765681 ~ 72766851 (+)
saa saa other upstream 2110407 72665460 ~ 72666872 (+)
G545485 NA other downstream 442431 75237800 ~ 75238164 (+)
G545601 NA other downstream 626492 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1132859 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2092063 76827001 ~ 77038395 (+)
G547884 NA other downstream 2482623 77277992 ~ 77279354 (+)

Expression


Co-expression Network