LOC118965044 (LOC106609580)


Basic Information

Item Value
gene id LOC118965044
gene name LOC106609580
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74902940 ~ 74903683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981783.1
caagaCCGCTTCCTAGTTCTGCTGCAATGCTTGCATTTCGTCAACAATGCTATCCTAAGTGACCcgttatacaaaataagaaatgttcTTATCAGCCTGACATCAGCATTTGGTCGGGTCTTTGTGCCATACAAGGACCTATGCATTGATGAGTCCCTGATGTTATGGAAAGGTAGGCTGGCGTTCCGTCAATATATTCCCTCCAAAAGGCACAGGTTTGGAGTCAAGTTCTTTGTCACGTGCGGCGTGAAGACAGGATTTGTCCAGGATATTATAGTTTACACAGGGTCCACCACTGACTTCAAACATTATGAGGGGCTTGGGGTGTCAGGGTCCGTGGTGATGACCATGCTGGCTCCTCATCTCGGCAAGGGACACACTTTGTATGTGGACAATTGGTTCAGCAGTCCCACACTCTTCCAGCATCTGCTCTTCAACAGCACGGGGGCCTGTGGCACGGTCAGGTCGAACAGGAAGGGGACGCCGGCATTCGGATGCAGGAAGAtgcagagaggggaggtggagttcCAGGAGAACggtcaacagctggcagtaaagttGCATGACAAGCGAGACGTCaatgtcctctccactgtccatacagcaaccatgtCGGCCACAGGGATGGTGGACCACCTGACGGGAGAGAGATTGATCAAACCAGATTGTGTGCTTGATtataacctcaaaatgggggcCGTGGATAAGGCGGACATGATAAACAGAAGATATTTTTCCATCTGA

Function

NR:

description
PREDICTED: piggyBac transposable element-derived protein 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981783.1 True 744 mRNA 0.50 1 74902940 74903683

Neighbor

gene id symbol gene type direction distance location
LOC110526579 LOC106562344 coding upstream 107571 74777279 ~ 74795369 (+)
LOC110526577 LOC106587561 coding upstream 170411 74672184 ~ 74732529 (+)
LOC110526576 tm2d3 coding upstream 239151 74656888 ~ 74663789 (+)
LOC110526575 LOC106587557 coding upstream 246192 74631019 ~ 74656748 (+)
LOC110526573 LOC106594537 coding upstream 290905 74609391 ~ 74612035 (+)
LOC110526582 LOC106562373 coding downstream 18713 74922396 ~ 75155528 (+)
LOC110526583 LOC106562374 coding downstream 264885 75168568 ~ 75194690 (+)
LOC110526584 LOC106587566 coding downstream 412822 75316505 ~ 75324636 (+)
LOC110526588 LOC106562377 coding downstream 490114 75393797 ~ 75408675 (+)
LOC110526592 LOC106587573 coding downstream 551304 75454987 ~ 75456513 (+)
G545117 NA non-coding upstream 164630 74738065 ~ 74738310 (+)
G544865 NA non-coding upstream 178729 74704257 ~ 74724211 (+)
G544805 NA non-coding upstream 263752 74616477 ~ 74639188 (+)
G544832 NA non-coding upstream 286673 74616061 ~ 74616267 (+)
G545363 NA non-coding downstream 88929 74992612 ~ 74993103 (+)
G545457 NA non-coding downstream 286036 75189719 ~ 75190182 (+)
G545460 NA non-coding downstream 294623 75198306 ~ 75198529 (+)
G545462 NA non-coding downstream 296028 75199711 ~ 75204903 (+)
G545464 NA non-coding downstream 302600 75206283 ~ 75206642 (+)
G544565 NA other upstream 614802 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1515253 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1757593 73037953 ~ 73182742 (+)
G542890 NA other upstream 2136089 72765681 ~ 72766851 (+)
saa saa other upstream 2236068 72665460 ~ 72666872 (+)
G545485 NA other downstream 334117 75237800 ~ 75238164 (+)
G545601 NA other downstream 518178 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1024545 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1983749 76827001 ~ 77038395 (+)
G547884 NA other downstream 2374309 77277992 ~ 77279354 (+)

Expression


Co-expression Network