LOC110526582 (LOC106562373)


Basic Information

Item Value
gene id LOC110526582
gene name LOC106562373
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74922396 ~ 75155528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607672.2
TGTCTCGCTTCAAATCCAAAAGATGAAAAGACATTTTGCATTGAAAATACAAGATGTAATGTTGTTTATTCGTCATTTTTTCAACGACTTTACTATTATTGCAGCGGTTGCCGGGAGGAAAGAAGAGGTACCTCTCCTTGGAGACTTCCCGGGATGCAAAACTCAAGCGCAAGACACAAGAATGGAGCGCAGTACTGCTGCTGTCTGATTGGCGAAACGTCCATCGCTTCATCTTTTCACATTAGTTCTACTCGACGAAGCTCTAACCAGGTCTGTTGCAACCAGGACTCGACCACGAGACATCTAACTTGTAGAGACAGTAGGCTAACATTTGTCTCGGGTTTGTTTAGTCGGAAAAACCTATTATTTAAGAAATAGGTGGACGGCTTTTCCGTGGTGCTGAAGATAGGACTTGGTTGATCTACGAGTGAGGAGAATCAGTACACGAGCCCACACTTTCCGCTCTGTCTTGTCAGCTTTATGATATCAGGTGCTTTCGCTAAGGCAGCAGTCTGAGCTGAGGCAGGATAGCAGGATGCTGTGGGTGGAGTGTAGGATAGTGGACGCCCTGCGTGGGAGAAGACGGATGAGGGCCACGGCCGTCAAGCTGCCCTGCTCCTTCTGGTTCCTTCTGCTGTTCGGGGCTGGAGGCCTTGTCCTCTTCATACACCTCCAGGACCTCTCAGAGATGGTCCAGCAACAGGCTCCAGGTGTGAAGCTAAGAGGAACAGCTCGGCAGTCCAGAGAGGCGCTGTGTACTCAGGACAGTGAGGGTGTGAGAGTCAGCCCAGGCCAGGACCAGAGACCGGCTGTGGAAGGCCTAACCAGCCCCATCCCCCCCATGCAGTTCCCTGCCTTCCAGTGGACCAGACATTCAGCCATCCCTGGCTCTAGGGAACAGGACATGGGCTCCCTGCGCGTCACCAAGCGCCACAGGAAACTACTGAAAACCAGCCCTGTGGTCTCTAACAACTCACACaactcctcctcgtcctcctcgggTTCCCCGGACTCTCCTGAGGAGAGCTGGCAGTGGCACAGACTGTCCCACATCCAGGAAGCTCGGCGGAGGCTGATGAAGGAGGTCTGTGCCAAGTACAAGAGCAGCATCTCCAGAACCATCACACCTCACCACGTGTCCCGGATCTATGTGGAGGACAAGTACAAGCTGCTGTACTGCGAGGTGCCCAAGGCGGGCTGCTCCAACTGGAAGAGGATCCTCATGGTGCTGTCTGGCCTGGCGTCGTCCACCCACGAGATCAAACACGACGCTGTCCACTACGGCAACCACCTCAAGAGGCTGGACAGCTTCGACCGCCAGGGCATCGCGCAGCGCTTGGAGACCTACACCAAAGTCCTGTTTGTCCGCGAACCCCTGGAGAGGCTGGTGTCCGCCTTCAGGGACAAGTTTGAGAACCCCAACACCTACTATCATCCTGTATTCGGGAAGCCCATCATCTCCAAGTACAGGGTGAACGCCTCCAAGGTGGCCCTCAGGACAGGCAGCGGCGTGACCTTCCAGGAGTTCATGCAGTATCTGTTGGATGTGCACAGGCCTGTGGGCATGGACATTCACTGGGAGCCTACCAGCCAGCTCTGCAGCCCCTGTCTGCTGGACTACAACTTCATCGGCAAGTTTGAGACCATGGAGGAGGAGGCTAATTTCTTACTACGTAGAACTGGTGCCCCGCATAACCTCACCTTCCCCAGTTTTAAAGACAGGAACCCCAAGGCTGAGAGGACTTCAACTCATTTAACCCATCGTTACTTTGCACAGCTCAGCacttcagagagacagagagcttaTGACTTTTATTACATGGACTACCTTATGTTTAACTACTCCAAACCTTTTAAAGATTTGTATTGATTGACTCTCTGATCTCTGTTTGAGTCCGCAAATCTCCCCTGGCTTTAAGTGGAGGAGCGCACCATTTACAAGTATTACTAGAAGATCATCACATGAAAACAATGTCTCGGTCAGGCATGTCAATGTGGTCCTGTATTAAATACCGATGCAAAACATTGAACTCACAAACAATTTATCACTGCACAGTCAGTGACGTGAAAAGACAGTTCAATGCTTTAAAATGTGTTACGTGAAGTGGTACCCACCTATCATTTTTTGCACTTAGTGTAGCAAATTCTTTCAAATTCTCCAAAAACATATTGACTCAGACTGAGCATTAGTCTGCCACACTACTGCTGGAGAGTGTGTCTGGACAGTCTTATAGGGGAGCATCCCCCTTAAGTATCCCTAAGTACTACTTTACCACACCATCCCACTACCCTTTAGAATACACATCCTCATCACTGTCATCAAGGCTTTTTCTGACACTAATATTTAAAAACTTTACAAAGGGCATTCAGAtgactatatatatttttctatgtaTTTCTATAATGGATATATTCACTGCTTCTTTGTGGGGATTTTCATTTCTGATATCACTGAATGTTATTTCAGTAATTATATGGTGAGTGTGTGTAGAGAATATCTGGCTATATTTAGGCCTCTTGGGTCCCCCTGTACATCAGACCCTGTAaaacacgtgtcaaactcattccatggagggccaagtgtctgcaggtttttgctcctcccttgtacttgactgATCAATGAAGGTcattgattagttaggaactcccctcacctggttgtctaggtcttagcgTACAGTCgaccctccatggaatgagtttgacaaccctgttgtAAAACATGCTGGTTAACACATGGACACGTAGAAATTCCACTCCAATCCTTCCCTAATGACCCAATAAGCCCCTGCAGTGAATTATCACTGCAGTGTTAGAGAGAACAGAACACTGACACCATCTCTTATACTGACACTGACAAAGTCACAAGGCAGCTTATCCTACCCaactctgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgacagagagtgagacgtgtgtgagagagaacaacTGGAGCTGCTGCTCTGATCTCTTTTCATGGCTCTGAGGGGGAGTAAGCCCTGGCCCACAGCCCAGACACACTCAGACCTAGGTCCCACACAAGACAGACAACTGTGAGGACAGCTTTATGATGAGATCTCTCAACAGGGTAACAACTTTACACAACCCATAATAACACATAATCTACTGTCCCACAAACTGTACAGGCAATGGGTTGTAGGATCTGTGTGAGAAAGCTAGTGTTCAGAGAAGCCAGCAATTGGAGCAGTATTTCAAAATATCCTCTTTTACCTCCTATGAACAACACTGATTTATAGCTCCACAGTAGAGTACCACAGCTATTCTGCACAGTGGGACGGCAGGGAGAGGCAAGCACACTTGGGGCCAATCAAACACAGTTTCCTGGATAAGTCAGAAATATGATTCTTCCCTGGCTGCTAGAACGCTGGGTTGGTTGGCTTTGTGAAATCCGTCTGTAACAGAAAGAAACTCAATTGCATATGCTGTTGTGTTGTGACGTGTATACAGGTCATGTTATCGACTTGTCCCTGAAACGTGGTTGCTGTTTTTAAATGAATAGTCCTCTAATAAGTAAGTAGAATGTTCCTCATATTCAATTGTGTTCTACTCTGCAGCTCTAGTTAGAATGAATACCCCAGACaagccaggg

Function

NR:

description
carbohydrate sulfotransferase 8-like

GO: NA

KEGG:

id description
K09672 CHST8; carbohydrate 4-sulfotransferase 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607672.2 True 3766 mRNA 0.48 5 74922396 75155528

Neighbor

gene id symbol gene type direction distance location
LOC118965044 LOC106609580 coding upstream 18713 74902940 ~ 74903683 (+)
LOC110526579 LOC106562344 coding upstream 127027 74777279 ~ 74795369 (+)
LOC110526577 LOC106587561 coding upstream 189867 74672184 ~ 74732529 (+)
LOC110526576 tm2d3 coding upstream 258607 74656888 ~ 74663789 (+)
LOC110526575 LOC106587557 coding upstream 265648 74631019 ~ 74656748 (+)
LOC110526583 LOC106562374 coding downstream 13040 75168568 ~ 75194690 (+)
LOC110526584 LOC106587566 coding downstream 160977 75316505 ~ 75324636 (+)
LOC110526588 LOC106562377 coding downstream 238269 75393797 ~ 75408675 (+)
LOC110526592 LOC106587573 coding downstream 299459 75454987 ~ 75456513 (+)
LOC110526593 cnep1r1 coding downstream 301074 75456602 ~ 75459378 (+)
G545117 NA non-coding upstream 184086 74738065 ~ 74738310 (+)
G544865 NA non-coding upstream 198185 74704257 ~ 74724211 (+)
G544805 NA non-coding upstream 283208 74616477 ~ 74639188 (+)
G544832 NA non-coding upstream 306129 74616061 ~ 74616267 (+)
G545457 NA non-coding downstream 34191 75189719 ~ 75190182 (+)
G545460 NA non-coding downstream 42778 75198306 ~ 75198529 (+)
G545462 NA non-coding downstream 44183 75199711 ~ 75204903 (+)
G545464 NA non-coding downstream 50755 75206283 ~ 75206642 (+)
G545470 NA non-coding downstream 61810 75217338 ~ 75217617 (+)
G544565 NA other upstream 634258 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1534709 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1777049 73037953 ~ 73182742 (+)
G542890 NA other upstream 2155545 72765681 ~ 72766851 (+)
saa saa other upstream 2255524 72665460 ~ 72666872 (+)
G545485 NA other downstream 82272 75237800 ~ 75238164 (+)
G545601 NA other downstream 266333 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 772700 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1731904 76827001 ~ 77038395 (+)
G547884 NA other downstream 2122464 77277992 ~ 77279354 (+)

Expression


Co-expression Network