LOC110526584 (LOC106587566)


Basic Information

Item Value
gene id LOC110526584
gene name LOC106587566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75316505 ~ 75324636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607679.2
CCACCATTCTTTGCGGTGAGGCAAGGCATCATAAGAAAACGGCCATGTCGTTGTGCTAGCAAATTGGTGGAAGAACGAACGAGCAATAATCTTTGTTAGAAGTGTGCAAACAGGACTAAATAACGTAGCTAGCTACTTTCCATATACTTTTGGAAGATATATATTTATTTCCCACACTCAAATAAAAAGGAAGACGGTATGAGTGGAGGGACACCCTACATCGGGAGTAAAATTAGCCTAATCTCGAAGGCCGAGATTCGCTATGAGGGGATTTTATACACAATTGACACCGAAAATTCGACTGTTGCCCTCGCCAAAGTCCGCTCCTTTGGCACTGAGGACCGCCCTACTGACAGGCCAATTCCACCACGGGATGAAGTCTTCGAGTACATAATCTTCAGAGGGAGTGACATCAAGGACCTGACTGTTTGCGAGCCACCAAAAGCCACCAGCTCCCTGCCTCAGGACCCTGCCATTGTTCAATCCTCTATTGGATCCACCAATGCTCCACCCCCATCATTCCAGTCTGTGGGCTCATATGCACCCTTTAGCGGCAGGGCTCCTGTCCCCCCTTACAGCCAGTTTAACCCCAGCCCCCTGGTGTCCCAGCAGTTTGGAGTTGTCGGTGGAGGTCGCACCAGTCCCCAGCTGGACACTCTGAGGAAGAGCCCTTCCTTGGAGCAGGCAGTGCAGACTTCCCCCACCACTGCCCCTGCTGCACCTGCACCAGTGGGACAAAGGAGCCCAGCTGGCCCATCAGCCAGGCCCATCACTACCCTGGGCAACCAGAAGCCTCCAGACATCCTGGAACAGAGGAGGGGCCCTGAGGTTCAGAAAATACCCAGAACAGATTCCGAGCAAGGTGGTGGCGACAACCGGAATCACCGTCAATGTGCCGGTGGTCCTCCCCCTCAGCGCCGTGGTCGTGGAGGTGGTCACCGTGGAAGAGGCCGTTTCAACCCACACAGGGACGGTCCCATGAAGTTTGATCAAGACTTTGACTTTGAGACTGCCAACGCTCAGTTCAACAAGGAGGAGATTGAAAAAGAGTTTCAGAGCAAACTCAAACTGAAAGATGACAAGCCTGATAAACCAGAGAAGGCTCTTAATGGAGATGAGAAGGCAGATTCTGGAGTGGAGACCCAGAACAGTGAAGGCAATGCTGAGGAAGAGGAACCTGTGGTGGCCAACGTTTACTACGACAAGACTAAGTCCTTCTTTGATAACATATCTTCTGATGATACAAGGAAAGCAGCGGAGCGATCTGGCGGTTCAGGATTCCCAAGAAGGCAGACttgggctgaggagaggaggatgaattCGGAGACCTTTGGCATTCCACTGAGGCACAACCGAGGCCGAGGAGGCTTCAGAGGAAGTCGTGGCGGCGTGGGCTTCCGTGGGGGCAGAGGGCGTGCCATGAGCAGAGGTTCCTTTGGACCCCCCCGCGGGGCCCCACCCGGCTTCAGGGGAGGATTCCGAGGAAGCAGCAGAGGTGGCCGGGAGTTCGTTGAATATGAATACAGGAAGGATAACAAAGTGGCCGCGTAGTGTACCAGAGAGATGGATCCACCAAGAATCGTAGCCCTTCATGGTCCAGAAATATTTGTCAAAAAGATTGACAACATACTCTGTAAATTTCCCACCAGCACTGGGGTTGACTGCTTGATTTCAACGGGTGTGAATGCAGTTTCTTTAccaatttcattttttttctcccaaaaATACAACAAAGGATTATAATGTGCTTTTGAGAATTTGAGCATTGTTTGATATTATACAGTAATCAGAGTGACAAGAACTTGTGTAAATATTGTACTCCAGTGGAATTATTCAGTATTTTTGCATCTATTTGAGTTCCTTTCTTACTAAAATTGTATTTGATAATGTTCTGTTGTGTAAAGATGTATGCAGAATCCCGCTGATACTGTGAGTACTTTGATCACTGAAAAATAGCTTTATTTTTTGGGGATATATCCTGCAATGTACCTTAGGAGCACTAAAATCCTACATAGCCTGTCGGGTCACAgtttttgttttttatattttcctaGTCTATTTCTTAGCCGTTTATCCCGTGTTTTGACGTTCTGCTGTACTTTGCCAAGTTTCTTAAACTATTGTTTCAGTGTTCCTGCTAaaagactaaaatgtaaatgttcttGGGGTACATCAAGTAGATAAGTGGTTTACATCATAGGCTCACTTTTGTTGTTGTAGAGCTCCTGCTTTCTAATTAAGGTAGTCAGTTCAGACCTTTAAGCTATTTATACAAGATCGGAGTAGGTCAGACATCCTGAAAACATTTTGGAGCGTTTTCACTAATCGGGATCATTTGTTTTATAATCTTACTGAATATTGAATGAATGTATTTCTACTGCATCACGCTGTTATTTCTGCACCAAAGATATTTTGTGGTTGCCACTTAACTTCTGGTTTTAGAAATGCATATGAATGAATTGATTCAGAGGTTTTGGGATGTTTTCTCTACCCCTAAGCATGCCCTGTGGTTCCCAACACCTGCTAATGCTGGTCACCAACTACAGGTCATGTTGGGAAGGACTGCAGTCCTTGTGATGGGGTGTGCTGCACATATTTGCTCTGGCATATTTTTGTTAAATGTAGTGTTGGTGACTATTGCTCTTTTTAGTGTAGTCAATGTCGTCAAAGGAGGCTTTTCTGCAACAATCATGGCTGAACTTGGAGCATCAGTCATTAGAAATGTCTAGCTAGCCTTCATCTCCCCAGCGCTTGAATATGAAATAACTGCCATGTTTTAACTAGCCGCTTAACAAGTGTCTATGGTATTAAATCATTGTTGACCTCTAAATGTTTGCCCTGCAAGAGAAGATGGCTGCTTCTGGCCTAGACTGCTGTGTAACCAGATTGATCTTGTCCCCAGTATGGAATACGACTGGGAGCATTGGGCTACTTATTCTGTTTGTTTCAAAACAATTTGCAATTCAACAAGtgttacagatgtatgttgacaTTTTTCTAGCAGACAATCTTGCTTTGCCTGATGGTCTATTGGCATGCTTGGCCCTTGTATGGTGTTGCATCTGAAAAAACAATCTGGTGTGCTCAACTCGAAACAAAGATGCtggtgttttttgtttttcagtcCCACTAATGTAACTTCAGTGAATAATAGTATCATTCACCAGCTGTATTGACATTGTAGTAGCCTGGCACACAAGTGATTCTAACGTAAGCTTGTCCTGAAAAAAAGAACATCAATTTGTTGAAGTGGCAATATGTTGGGGAGAGTAAGGGCTGTATAACTTGGGAAAAATCTTCAGCCATCAGAGATAATATTCTGCACAACTAGGTTTGAGTATACATTCATAGATTTATTTTAAGTCCAACCGCTAAGTTtacatgaggttgaaggaaacAAATTCACTTGTTGGAAGAAGTTAGATGAAAAGTAGTGAAGTTACTCCAGGCCTTAAAACCAATCTACTAAGCTTCTGGAAGAATTCCTAGTGATCCAATTCCAGCATTTGTAATAAACCGCATCGGTGCTTTAAGCTTGCAATGTTTGTCCCTTTCCCCATGCTTGGGGAAGTCTATTGAGCACTGTCTATTGTCCAGCACTTGCAGTTTGGAGGATTGTCCATAAAATCATACCTCTTGGGGCGATTCAGATTTTTAATGGgatattttctttttttaagaTAAAGGGATGTGAACTGGATGTTGAGACCAGTGGATAAGGGGGTGGATTTTTCAGATGTTCTCACTTTTTGTCAGTATGTTTGAGAGTGCTAGAAGGAGGGTTATGCATTTATCTTTCTCTCAATTGacctacatacagtatgatgACAATATGTAAGCTGTACTATTTGAAAACACTACAAGATAAACCTGATCTAGAACATAAAAAATGTTGGGCAGCTAGGCCAATATATCCTGTAGTTCATAAATGTGCAGTTTGACTGAATTGTTGTACAGATTGATAATACAGAGCAATGTATGGCAGCCTTAGCCTCGTACAAATCATCCTGATCTGTGAGCTTGTGAGATCAGGGTGGCTTGTATGGGGCTATGGCAGCCATGCCTTGtgataaaacacaaaataatgacTCCGAACAAGGATTATACACAGGAGCCTGGGCAGTTGCAATAACCACATCGGTGTAAGGTCCAGAGCTAATTTGAGATTTCAAACAGTACATATTACCTACATATTGCTGTAAAGTTTTGATTACATTAGTTACTTCTTCCGACCTCTGGAATAATAAAGCCAGATATTGTTTCTAAATAAGGCAGTTGAACAGCATGGTGTACTTCAAGTGGGCCGACCCTCTGCAGACAGGTTTTTACTCTATAAAAATAAACAATTGTTCAATAGC
>XM_021607680.2
CCACCATTCTTTGCGGTGAGGCAAGGCATCATAAGAAAACGGCCATGTCGTTGTGCTAGCAAATTGGTGGAAGAACGAACGAGCAATAATCTTTGTTAGAAGTGTGCAAACAGGACTAAATAACGTAGCTAGCTACTTTCCATATACTTTTGGAAGATATATATTTATTTCCCACACTCAAATAAAAAGGAAGACGGTATGAGTGGAGGGACACCCTACATCGGGAGTAAAATTAGCCTAATCTCGAAGGCCGAGATTCGCTATGAGGGGATTTTATACACAATTGACACCGAAAATTCGACTGTTGCCCTCGCCAAAGTCCGCTCCTTTGGCACTGAGGACCGCCCTACTGACAGGCCAATTCCACCACGGGATGAAGTCTTCGAGTACATAATCTTCAGAGGGAGTGACATCAAGGACCTGACTGTTTGCGAGCCACCAAAAGCCACCAGCTCCCTGCCTCAGGACCCTGCCATTGTTCAATCCTCTATTGGATCCACCAATGCTCCACCCCCATCATTCCAGTCTGTGGGCTCATATGCACCCTTTAGCGGCAGGGCTCCTGTCCCCCCTTACAGCCAGTTTAACCCCAGCCCCCTGGTGTCCCAGCAGTTTGGAGTTGTCGGTGGAGGTCGCACCAGTCCCCAGCTGGACACTCTGAGGAAGAGCCCTTCCTTGGAGCAGGCAGTGCAGACTTCCCCCACCACTGCCCCTGCTGCACCTGCACCAGTGGGACAAAGGAGCCCAGCTGGCCCATCAGCCAGGCCCATCACTACCCTGGGCAACCAGAAGCCTCCAGACATCCTGGAACAGAGGAGGGGCCCTGAGGTTCAGAAAATACCCAGAACAGATTCCGAGCAAGGTGGTGGCGACAACCGGAATCACCGTCAATGTGCCGGTGGTCCTCCCCCTCAGCGCCGTGGTCGTGGAGGTGGTCACCGTGGAAGAGGCCGTTTCAACCCACACAGGGACGGTCCCATGAAGTTTGATCAAGACTTTGACTTTGAGACTGCCAACGCTCAGTTCAACAAGGAGGAGATTGAAAAAGAGTTTCAGAGCAAACTCAAACTGAAAGATGACAAGCCTGATAAACCAGAGAAGGCTCTTAATGGAGATGAGAAGGCAGATTCTGGAGTGGAGACCCAGAACAGTGAAGGCAATGCTGAGGAAGAGGAACCTGTGGTGGCCAACGTTTACTACGACAAGACTAAGTCCTTCTTTGATAACATATCTTCTGATGATACAAGGAAAGCAGCGGAGCGATCTGGCGGTTCAGGATTCCCAAGAAGGCAGACttgggctgaggagaggaggatgaattCGGAGACCTTTGGCATTCCACTGAGGCACAACCGAGGCCGAGGAGGCTTCAGAGGAAGTCGTGGCGGCGTGGGCTTCCGTGGGGGCAGAGGGCGTGCCATGAGCAGAGGTTCCTTTGGACCCCCCCGCGGGGCCCCACCCGGCTTCAGGGGAGGATTCCGAGGAAGCAGCAGAGGTGGCCGGGAGTTCGTTGAATATGAATACAGGGATAACAAAGTGGCCGCGTAGTGTACCAGAGAGATGGATCCACCAAGAATCGTAGCCCTTCATGGTCCAGAAATATTTGTCAAAAAGATTGACAACATACTCTGTAAATTTCCCACCAGCACTGGGGTTGACTGCTTGATTTCAACGGGTGTGAATGCAGTTTCTTTAccaatttcattttttttctcccaaaaATACAACAAAGGATTATAATGTGCTTTTGAGAATTTGAGCATTGTTTGATATTATACAGTAATCAGAGTGACAAGAACTTGTGTAAATATTGTACTCCAGTGGAATTATTCAGTATTTTTGCATCTATTTGAGTTCCTTTCTTACTAAAATTGTATTTGATAATGTTCTGTTGTGTAAAGATGTATGCAGAATCCCGCTGATACTGTGAGTACTTTGATCACTGAAAAATAGCTTTATTTTTTGGGGATATATCCTGCAATGTACCTTAGGAGCACTAAAATCCTACATAGCCTGTCGGGTCACAgtttttgttttttatattttcctaGTCTATTTCTTAGCCGTTTATCCCGTGTTTTGACGTTCTGCTGTACTTTGCCAAGTTTCTTAAACTATTGTTTCAGTGTTCCTGCTAaaagactaaaatgtaaatgttcttGGGGTACATCAAGTAGATAAGTGGTTTACATCATAGGCTCACTTTTGTTGTTGTAGAGCTCCTGCTTTCTAATTAAGGTAGTCAGTTCAGACCTTTAAGCTATTTATACAAGATCGGAGTAGGTCAGACATCCTGAAAACATTTTGGAGCGTTTTCACTAATCGGGATCATTTGTTTTATAATCTTACTGAATATTGAATGAATGTATTTCTACTGCATCACGCTGTTATTTCTGCACCAAAGATATTTTGTGGTTGCCACTTAACTTCTGGTTTTAGAAATGCATATGAATGAATTGATTCAGAGGTTTTGGGATGTTTTCTCTACCCCTAAGCATGCCCTGTGGTTCCCAACACCTGCTAATGCTGGTCACCAACTACAGGTCATGTTGGGAAGGACTGCAGTCCTTGTGATGGGGTGTGCTGCACATATTTGCTCTGGCATATTTTTGTTAAATGTAGTGTTGGTGACTATTGCTCTTTTTAGTGTAGTCAATGTCGTCAAAGGAGGCTTTTCTGCAACAATCATGGCTGAACTTGGAGCATCAGTCATTAGAAATGTCTAGCTAGCCTTCATCTCCCCAGCGCTTGAATATGAAATAACTGCCATGTTTTAACTAGCCGCTTAACAAGTGTCTATGGTATTAAATCATTGTTGACCTCTAAATGTTTGCCCTGCAAGAGAAGATGGCTGCTTCTGGCCTAGACTGCTGTGTAACCAGATTGATCTTGTCCCCAGTATGGAATACGACTGGGAGCATTGGGCTACTTATTCTGTTTGTTTCAAAACAATTTGCAATTCAACAAGtgttacagatgtatgttgacaTTTTTCTAGCAGACAATCTTGCTTTGCCTGATGGTCTATTGGCATGCTTGGCCCTTGTATGGTGTTGCATCTGAAAAAACAATCTGGTGTGCTCAACTCGAAACAAAGATGCtggtgttttttgtttttcagtcCCACTAATGTAACTTCAGTGAATAATAGTATCATTCACCAGCTGTATTGACATTGTAGTAGCCTGGCACACAAGTGATTCTAACGTAAGCTTGTCCTGAAAAAAAGAACATCAATTTGTTGAAGTGGCAATATGTTGGGGAGAGTAAGGGCTGTATAACTTGGGAAAAATCTTCAGCCATCAGAGATAATATTCTGCACAACTAGGTTTGAGTATACATTCATAGATTTATTTTAAGTCCAACCGCTAAGTTtacatgaggttgaaggaaacAAATTCACTTGTTGGAAGAAGTTAGATGAAAAGTAGTGAAGTTACTCCAGGCCTTAAAACCAATCTACTAAGCTTCTGGAAGAATTCCTAGTGATCCAATTCCAGCATTTGTAATAAACCGCATCGGTGCTTTAAGCTTGCAATGTTTGTCCCTTTCCCCATGCTTGGGGAAGTCTATTGAGCACTGTCTATTGTCCAGCACTTGCAGTTTGGAGGATTGTCCATAAAATCATACCTCTTGGGGCGATTCAGATTTTTAATGGgatattttctttttttaagaTAAAGGGATGTGAACTGGATGTTGAGACCAGTGGATAAGGGGGTGGATTTTTCAGATGTTCTCACTTTTTGTCAGTATGTTTGAGAGTGCTAGAAGGAGGGTTATGCATTTATCTTTCTCTCAATTGacctacatacagtatgatgACAATATGTAAGCTGTACTATTTGAAAACACTACAAGATAAACCTGATCTAGAACATAAAAAATGTTGGGCAGCTAGGCCAATATATCCTGTAGTTCATAAATGTGCAGTTTGACTGAATTGTTGTACAGATTGATAATACAGAGCAATGTATGGCAGCCTTAGCCTCGTACAAATCATCCTGATCTGTGAGCTTGTGAGATCAGGGTGGCTTGTATGGGGCTATGGCAGCCATGCCTTGtgataaaacacaaaataatgacTCCGAACAAGGATTATACACAGGAGCCTGGGCAGTTGCAATAACCACATCGGTGTAAGGTCCAGAGCTAATTTGAGATTTCAAACAGTACATATTACCTACATATTGCTGTAAAGTTTTGATTACATTAGTTACTTCTTCCGACCTCTGGAATAATAAAGCCAGATATTGTTTCTAAATAAGGCAGTTGAACAGCATGGTGTACTTCAAGTGGGCCGACCCTCTGCAGACAGGTTTTTACTCTATAAAAATAAACAATTGTTCAATAGC

Function

NR:

description
protein LSM14 homolog A-like isoform X2

GO: NA

KEGG:

id description
K18749 LSM14, RAP55, SCD6; protein LSM14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607679.2 False 4358 mRNA 0.44 9 75316505 75324636
XM_021607680.2 True 4355 mRNA 0.44 9 75316505 75324636

Neighbor

gene id symbol gene type direction distance location
LOC110526583 LOC106562374 coding upstream 121815 75168568 ~ 75194690 (+)
LOC110526582 LOC106562373 coding upstream 160977 74922396 ~ 75155528 (+)
LOC118965044 LOC106609580 coding upstream 412822 74902940 ~ 74903683 (+)
LOC110526579 LOC106562344 coding upstream 521136 74777279 ~ 74795369 (+)
LOC110526577 LOC106587561 coding upstream 583976 74672184 ~ 74732529 (+)
LOC110526588 LOC106562377 coding downstream 69161 75393797 ~ 75408675 (+)
LOC110526592 LOC106587573 coding downstream 130351 75454987 ~ 75456513 (+)
LOC110526593 cnep1r1 coding downstream 131966 75456602 ~ 75459378 (+)
heatr3 LOC106587571 coding downstream 135023 75459659 ~ 75468641 (+)
tent4b LOC106587575 coding downstream 149407 75474043 ~ 75498286 (+)
G545506 NA non-coding upstream 59277 75257002 ~ 75257228 (+)
G545504 NA non-coding upstream 60925 75255374 ~ 75255580 (+)
G545494 NA non-coding upstream 70262 75245816 ~ 75246243 (+)
G545481 NA non-coding upstream 84303 75231856 ~ 75232202 (+)
G545479 NA non-coding upstream 86141 75230066 ~ 75230364 (+)
G545492 NA non-coding downstream 10374 75335010 ~ 75337018 (+)
G545600 NA non-coding downstream 94413 75419049 ~ 75490051 (+)
G545618 NA non-coding downstream 119054 75443690 ~ 75444352 (+)
G545684 NA non-coding downstream 272529 75597165 ~ 75597427 (+)
G545485 NA other upstream 78341 75237800 ~ 75238164 (+)
G544565 NA other upstream 1028367 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1928818 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2171158 73037953 ~ 73182742 (+)
G542890 NA other upstream 2549654 72765681 ~ 72766851 (+)
G545601 NA other downstream 97225 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 603592 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1562796 76827001 ~ 77038395 (+)
G547884 NA other downstream 1953356 77277992 ~ 77279354 (+)
G548000 NA other downstream 2187973 77512609 ~ 77523423 (+)

Expression


Co-expression Network