LOC110526588 (LOC106562377)


Basic Information

Item Value
gene id LOC110526588
gene name LOC106562377
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75393797 ~ 75408675 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607687.2
TCCTCTCGCGCCTTACGGTCTCACTCAGCCAGGGTAGTTGAGCTGAAAGGACCGCGCCCAACACATATCGACACCATGGGACTCACACACGACCCAACCTTCCAGAAACTGGAGAAATGGTACCATGAACATGCTCTGCACCTCAACATGAGGAAGATGTTTGAGGAAGACAAGGAGAGATTCCACAAATTCAGCACAACGCTGAAGACAGATCATGGAGACATTCTGATTGATTACTCTAAGAATCTCATCACTGAGGATGTCATGAAGATGTTGGTCGAACTGGGCAAGTCGAGGGGGATTGAGGCCACCAGGGACAAGATGTTCCATGGAGACAAGATCAACTTCACTGAGGGTCGTGCTGTGCTCCACGTGGCTCTGAGGAACCGCTCCAACCATCCCATCATGGTTGACGGACATGATGTGATGCCTGAGGTCAACAAAGTCCTGGAGAAGATGAAGGGCTTCTGCCACAAAGTTCGCAGTGGCGAGTGGAAGGGCTGGACTGGAAAGTCCATCACAGACGTTGTCAACGTCGGCATTGGTGGATCGGACCTGGGTCCTCTAATGGTGACTGAGGCTCTGAAGAACTACTCCAAGGGAGGTCCCCGTGTGCATTTTGTCTCCAACATTGACGGCACACACATCGCCAAAACCCTTGCTGAGCTCAATGCTGAGACCACCCTGTTCATCGTGGCCTCCAAGACTTTCACCACCCAAGAGACCATCACCAACGCAGAGTCTGCCAAGGAATGGTTCATTGAGCACGCTAAAGATAAATCTGCTGTTGCCAAGCACTTTGTGGCGCTCTCCACTGCCGGCCCTTTAGTGAAGGCCTTTGGCATTGATCCTGACAACATGTTTGGCTTCTGGGATTGGGTTGGTGGACGTTATTCCCTGTGGTCTTGTATTGGATTGTCCATTGCTCTGCACATCgGCTATGACAACTTTGAGAAGCTTCTAGAAGGGGCTCACTGGATGGACAACCATTTCAAAACAGCCCCTGTGGAGAAGAACGCTCCCATGCTCCTGGCTCTGCTGGGTGTCTGGTACATCAACTTCTTCCAGGCCGAGACCCACGCCATGCTGCCTTATGACCAGTACATGCACCGATTCGCTGCCTACTTCCAGCAGGGTGACATGGAGTCCAATGGAAAGTACATCACTATCCATGGCAAACGTGTCAACTACCATACTGGCCCCATCGTATGGGGAGAGCCTGGCACCAACGGACAGCACGCCTTCTACCAGCTCATTCACCAAGGAACTCGCATGGTCCCCGCTGACTTCCTCATCCCTGCCCAGACACAGCACCCCATCAGGGAAAGTAAGCACCATAAGATCCTGATGGCCAACTTCCTGGCCCAGACTGAGGCTCTGATGAAAGGAAAGACCACAGAGGAGGCTAAGAAGGAACTGGAGGCCGGCGGCCTGACAGGAGAGGCCTTGGAAACCATTCTGCCACACAAAGTATTCCAAGGAAACAAGCCAACCAACTCTATTGTCTTCAAGAAGCTGAACCCATTCACACTGGGAGCACTTATTGCCATGTATGAACACAAGATCTTTGTCCAGGGTGTTATGTGGGAGATCAACAGTTTTGACCAGTGGGGaGTTGAGCTGGGTAAGGCTTTGTGTAAGAAGATCGAGCCTGAGCTGCATGGCTCCAACGAGGTCCACTCTCACGACTCCTCCACCAACGGGCTCATTAACTTTATCAAGAAGAACCACGTCTAACCTGCCCACCACCGTCATCCATCCTCCCTGTCCTGCCCCCCTGCTGATGGGGGTGTCTGGGCTGTAGTGAAGGTAGACTCACTGCAGCATGTGTCACCATGCAGAGGAGTAGAAGCACTTTCTATGTCTGTAATCATCTGTCTGCGTCCTGTCTGTTTGTTGTGACATCGGACTGTATTTTACATACTGTTGTatgtttaagcaataaggcccgagtcggtgtggtatatggccaatataccacggctaagggctcttAGGCGatacgcaacgcggagtgcctggacacagctcttagtcgtggtatattagccatataccacaaatccctgaggtgccttattgctattataaactggttgccaacgtaattagaagggtaaaaataaatgttttgtcatacctgtggtatactgtctgatgtatcagccaatcagcattcagggtttgaaccacccagtttatagttATGGGTTTACCACTGTAAAGGGGAACGCTACTGTAGAGTGAGCCTGTGGAGGGGAGTGTAAACTACATCCCAGACTATCCCACTCCACTTATGGGGAGTAAAGCTTTTAATTAACATCTTTACACCAATCTATTGTCTGTGTCCTTAGTTGATTCTAGCCTGCATTCTGTTCAGAAGTTTGCAGTTGCAGACAATCCTAGAGGATAATGATGCATTTATGTATGAATAATGGAACCCACTTTCAAACCACACTCTCAATAAATCCAATGAGTTTTACTCATAGGGGAATGAAAGTGTTCCTTTATGTCCAAACCATCACTAGATGGCATTAGAGGACCCCAGATTTGGCCCAGTATAAACCAAACCAGCCTCAGATCAAATCACTGCTGTGCTTATTCTCTGGAACACAGGGTCAGAGGTCAATCTATCTCCTATATTTTCCATCCCCACAAATCCCCAGACATCAGACTGTTAACTAGCATCCATACTCAGAGAAAAACAAACAGCAGGCAGAAATACATCTGGAAAACATCATGTGATATGCAGGCCCCTCAATGTGAGACAGTTTAATCATCATTAAGCTCTATGATATGTGACTAAAACTCCATTAAACAAAATACtctgtgaatttcaaacaaa
>XR_005052239.1
TCCTCTCGCGCCTTACGGTCTCACTCAGCCAGGGTAGTTGAGCTGAAAGGACCGCGCCCAACACATATCGACACCATGGGACTCACACACGACCCAACCTTCCAGAAACTGGAGAAATGGTACCATGAACATGCTCTGCACCTCAACATGAGGAAGATGTTTGAGGAAGACAAGGAGAGATTCCACAAATTCAGCACAACGCTGAAGACAGATCATGGAGACATTCTGATTGATTACTCTAAGAATCTCATCACTGAGGATGTCATGAAGATGTTGGTCGAACTGGGCAAGTCGAGGGGGATTGAGGCCACCAGGGACAAGATGTTCCATGGAGACAAGATCAACTTCACTGAGGGTCGTGCTGTGCTCCACGTGGCTCTGAGGAACCGCTCCAACCATCCCATCATGGTTGACGGACATGATGTGATGCCTGAGGTCAACAAAGTCCTGGAGAAGATGAAGGGCTTCTGCCACAAAGTTCGCAGTGGCGAGTGGAAGGGCTGGACTGGAAAGTCCATCACAGACGTTGTCAACGTCGGCATTGGTGGATCGGACCTGGGTCCTCTAATGGTGACTGAGGCTCTGAAGAACTACTCCAAGGGAGGTCCCCGTGTGCATTTTGTCTCCAACATTGACGGCACACACATCGCCAAAACCCTTGCTGAGCTCAATGCTGAGACCACCCTGTTCATCGTGGCCTCCAAGACTTTCACCACCCAAGAGACCATCACCAACGCAGAGTCTGCCAAGGAATGGTTCATTGAGCACGCTAAAGATAAATCTGCTGTTGCCAAGCACTTTGTGGCGCTCTCCACTGCCGGCCCTTTAGTGAAGGCCTTTGGCATTGATCCTGACAACATGTTTGGCTTCTGGGATTGGGTTGGTGGACGTTATTCCCTGTGGTCTTGTATTGGATTGTCCATTGCTCTGCACATCgGCTATGACAACTTTGAGAAGCTTCTAGAAGGGGCTCACTGGATGGACAACCATTTCAAAACAGCCCCTGTGGAGAAGAACGCTCCCATGCTCCTGGCTCTGCTGGGTGTCTGGTACATCAACTTCTTCCAGGCCGAGACCCACGCCATGCTGCCTTATGACCAGTACATGCACCGATTCGCTGCCTACTTCCAGCAGGGTGACATGGAGTCCAATGGAAAGTACATCACTATCCATGGCAAACGTGTCAACTACCATACTGGCCCCATCGTATGGGGAGAGCCTGGCACCAACGGACAGCACGCCTTCTACCAGCTCATTCACCAAGGAACTCGCATGGTCCCCGCTGACTTCCTCATCCCTGCCCAGACACAGCACCCCATCAGGGAAAGTAAGCACCATAAGATCCTGATGGCCAACTTCCTGGCCCAGACTGAGGCTCTGATGAAAGGAAAGACCACAGAGGAGGCTAAGAAGGAACTGGAGGCCGGCGGCCTGACAGGAGAGGCCTTGGAAACCATTCTGCCACACAAAGTATTCCAAGGAAACAAGCCAACCAACTCTATTGTCTTCAAGAAGCTGAACCCATTCACACTGGGAGCACTTATTGCCATGTATGAACACAAGATCTTTGTCCAGGGTGTTATGTGGGAGATCAACAGTTTTGACCAGTGGGGaGTTGAGCTGGGTAAGGCTTTGTGTAAGAAGATCGAGCCTGAGCTGCATGGCTCCAACGAGGTCCACTCTCACGACTCCTCCACCAACGGGCTCATTAACTTTATCAAGAAGAACCACGTCTAACCTGCCCACCACCGTCATCCATCCTCCCTGTCCTGCCCCCCTGCTGATGGGGGTGTCTGGGCTGTAGTGAAGGTAGACTCACTGCAGCATGTGTCACCATGCAGAGGAGTAGAAGCACTTTCTATGTCTGTAATCATCTGTCTGCGTCCTGTCTGTTTGTTGTGACATCGGACTGTATTTTACATACTGTTGTatgtttaagcaataaggcccgagtcggtgtggtatattagccatataccacaaatccctgaggtgccttattgctattataaactggttgccaacgtaattagaagggtaaaaataaatgttttgtcatacctgtggtatactgtctgatgtatcagccaatcagcattcagggtttgaaccacccagtttatagttATGGGTTTACCACTGTAAAGGGGAACGCTACTGTAGAGTGAGCCTGTGGAGGGGAGTGTAAACTACATCCCAGACTATCCCACTCCACTTATGGGGAGTAAAGCTTTTAATTAACATCTTTACACCAATCTATTGTCTGTGTCCTTAGTTGATTCTAGCCTGCATTCTGTTCAGAAGTTTGCAGTTGCAGACAATCCTAGAGGATAATGATGCATTTATGTATGAATAATGGAACCCACTTTCAAACCACACTCTCAATAAATCCAATGAGTTTTACTCATAGGGGAATGAAAGTGTTCCTTTATGTCCAAACCATCACTAGATGGCATTAGAGGACCCCAGATTTGGCCCAGTATAAACCAAACCAGCCTCAGATCAAATCACTGCTGTGCTTATTCTCTGGAACACAGGGTCAGAGGTCAATCTATCTCCTATATTTTCCATCCCCACAAATCCCCAGACATCAGACTGTTAACTAGCATCCATACTCAGAGAAAAACAAACAGCAGGCAGAAATACATCTGGAAAACATCATGTGATATGCAGGCCCCTCAATGTGAGACAGTTTAATCATCATTAAGCTCTATGATATGTGACTAAAACTCCATTAAACAAAATACtctgtgaatttcaaacaaa

Function

NR:

description
glucose-6-phosphate isomerase-like

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0004347 glucose-6-phosphate isomerase activity molecular_function

KEGG:

id description
K01810 GPI, pgi; glucose-6-phosphate isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607687.2 False 2845 mRNA 0.48 18 75393797 75408675
XR_005052239.1 True 2766 mRNA 0.48 19 75393797 75408675

Neighbor

gene id symbol gene type direction distance location
LOC110526584 LOC106587566 coding upstream 69161 75316505 ~ 75324636 (+)
LOC110526583 LOC106562374 coding upstream 199107 75168568 ~ 75194690 (+)
LOC110526582 LOC106562373 coding upstream 238269 74922396 ~ 75155528 (+)
LOC118965044 LOC106609580 coding upstream 490114 74902940 ~ 74903683 (+)
LOC110526579 LOC106562344 coding upstream 598428 74777279 ~ 74795369 (+)
LOC110526592 LOC106587573 coding downstream 46312 75454987 ~ 75456513 (+)
LOC110526593 cnep1r1 coding downstream 47927 75456602 ~ 75459378 (+)
heatr3 LOC106587571 coding downstream 50984 75459659 ~ 75468641 (+)
tent4b LOC106587575 coding downstream 65368 75474043 ~ 75498286 (+)
LOC110526596 LOC106587576 coding downstream 90021 75498696 ~ 75572903 (+)
G545492 NA non-coding upstream 56779 75335010 ~ 75337018 (+)
G545506 NA non-coding upstream 136569 75257002 ~ 75257228 (+)
G545504 NA non-coding upstream 138217 75255374 ~ 75255580 (+)
G545494 NA non-coding upstream 147554 75245816 ~ 75246243 (+)
G545481 NA non-coding upstream 161595 75231856 ~ 75232202 (+)
G545600 NA non-coding downstream 10374 75419049 ~ 75490051 (+)
G545618 NA non-coding downstream 35015 75443690 ~ 75444352 (+)
G545684 NA non-coding downstream 188490 75597165 ~ 75597427 (+)
G545725 NA non-coding downstream 249620 75658295 ~ 75658516 (+)
G545485 NA other upstream 155633 75237800 ~ 75238164 (+)
G544565 NA other upstream 1105659 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2006110 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2248450 73037953 ~ 73182742 (+)
G542890 NA other upstream 2626946 72765681 ~ 72766851 (+)
G545601 NA other downstream 13186 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 519553 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1478757 76827001 ~ 77038395 (+)
G547884 NA other downstream 1869317 77277992 ~ 77279354 (+)
G548000 NA other downstream 2103934 77512609 ~ 77523423 (+)

Expression


Co-expression Network