LOC110526593 (cnep1r1)


Basic Information

Item Value
gene id LOC110526593
gene name cnep1r1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75456602 ~ 75459378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607691.2
ACAGTTACTTGTTTAAACCAATCACCGTACATTTTCCGAAATCGTCCAATCCACGTTAAGGTTTTCGCCTGTTCCCAATTGCCCAGGAGAACTAGCTAGCACGTCCACCAGCCGGAGAGAAGAGCAATGAATTCCTTGGAACAGGCCGAAGACCTGAAAGCTTTTGAGAGAAGATTGACAGAATACGTCTCCTGTTTGCAACCTGCAACCGGGAGGTGGCGAATGATTCTAATAGTGGTCTCAGTTTGTACGGCGACTGGAGCCTGGAACTGGTTGATAGACCCTGACACACAGAAGGTGTCTTTCTTCTCATCGTTGTGGAACCATCCGTTCTTCACCATCAGCTGCATCACTTTGATCGCTCTGTTCTTTGCTGGAATACACAAACGAGTCGTTGCACCATCAATTATTGCAGCTCGCTGTCGGACAGTTTTAGCTGAATACAACATGTCCTGCGATGATACGGGGAAACTAATTCTCAAACCACGGCCACACATCCAATAACCACAAACTCTTGGGGGGGTGGGAAATAAAATGTTCTTAATGACTATGTTGGTTGCCAGTAAACGACAGACTGACACAAGGACCAGAATCCTGTTTGGAGGATCTGAAACAACGTAAGAAGGAAGGAGATAGGGGAAATACTGAGGGGTGTTTATGTTGATGTGCTCCATTATGTATTAATGAAGGATtgtgaggggagaggacatcAACTGCCTTTTTAACAGCATCTCAGTCAGTGTTACGGTCGCCCTTAAAGCTGCTTCTGGACTCACACACCCTTTGACATAACTCATTCGCCATGAGTTCAGATGTTCATTTCTAATGATGacatgcattttgttttagaGATCTTTCTATTTTTAAACTAATTGTTATATACCTAATAAATACTTGTATGAAGATG
>XM_021607690.2
GTTTAAACCAATCACCGTACATTTTCCGAAATCGTCCAATCCACGTTAAGGTTTTCGCCTGTTCCCAATTGCCCAGGAGAACTAGCTAGCACGTCCACCAGCCGGAGAGAAGAGCAATGAATTCCTTGGAACAGGCCGAAGGTAGTCAACATGACCTGAAAGCTTTTGAGAGAAGATTGACAGAATACGTCTCCTGTTTGCAACCTGCAACCGGGAGGTGGCGAATGATTCTAATAGTGGTCTCAGTTTGTACGGCGACTGGAGCCTGGAACTGGTTGATAGACCCTGACACACAGAAGGTGTCTTTCTTCTCATCGTTGTGGAACCATCCGTTCTTCACCATCAGCTGCATCACTTTGATCGCTCTGTTCTTTGCTGGAATACACAAACGAGTCGTTGCACCATCAATTATTGCAGCTCGCTGTCGGACAGTTTTAGCTGAATACAACATGTCCTGCGATGATACGGGGAAACTAATTCTCAAACCACGGCCACACATCCAATAACCACAAACTCTTGGGGGGGTGGGAAATAAAATGTTCTTAATGACTATGTTGGTTGCCAGTAAACGACAGACTGACACAAGGACCAGAATCCTGTTTGGAGGATCTGAAACAACGTAAGAAGGAAGGAGATAGGGGAAATACTGAGGGGTGTTTATGTTGATGTGCTCCATTATGTATTAATGAAGGATtgtgaggggagaggacatcAACTGCCTTTTTAACAGCATCTCAGTCAGTGTTACGGTCGCCCTTAAAGCTGCTTCTGGACTCACACACCCTTTGACATAACTCATTCGCCATGAGTTCAGATGTTCATTTCTAATGATGacatgcattttgttttagaGATCTTTCTATTTTTAAACTAATTGTTATATACCTAATAAATACTTGTATGAAGATG
>XM_036980976.1
CTTTGAAGTAAAACACACGGTGACAAACGTTCCTTTGCAATTCACTTGAGTCGCTTGTTAGCTTGATTAGCCAGCCGCGgtgacctagctagctagctaggctaaccttTTCTCTTAAAGGACATTTAATGGACCTGAAAGCTTTTGAGAGAAGATTGACAGAATACGTCTCCTGTTTGCAACCTGCAACCGGGAGGTGGCGAATGATTCTAATAGTGGTCTCAGTTTGTACGGCGACTGGAGCCTGGAACTGGTTGATAGACCCTGACACACAGAAGGTGTCTTTCTTCTCATCGTTGTGGAACCATCCGTTCTTCACCATCAGCTGCATCACTTTGATCGCTCTGTTCTTTGCTGGAATACACAAACGAGTCGTTGCACCATCAATTATTGCAGCTCGCTGTCGGACAGTTTTAGCTGAATACAACATGTCCTGCGATGATACGGGGAAACTAATTCTCAAACCACGGCCACACATCCAATAACCACAAACTCTTGGGGGGGTGGGAAATAAAATGTTCTTAATGACTATGTTGGTTGCCAGTAAACGACAGACTGACACAAGGACCAGAATCCTGTTTGGAGGATCTGAAACAACGTAAGAAGGAAGGAGATAGGGGAAATACTGAGGGGTGTTTATGTTGATGTGCTCCATTATGTATTAATGAAGGATtgtgaggggagaggacatcAACTGCCTTTTTAACAGCATCTCAGTCAGTGTTACGGTCGCCCTTAAAGCTGCTTCTGGACTCACACACCCTTTGACATAACTCATTCGCCATGAGTTCAGATGTTCATTTCTAATGATGacatgcattttgttttagaGATCTTTCTATTTTTAAACTAATTGTTATATACCTAATAAATACTTGTATGAAGATG

Function

symbol description
cnep1r1 Predicted to be involved in positive regulation of protein dephosphorylation and positive regulation of triglyceride biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in nuclear membrane. Predicted to be part of Nem1-Spo7 phosphatase complex. Predicted to be active in cytoplasm. Orthologous to human CNEP1R1 (CTD nuclear envelope phosphatase 1 regulatory subunit 1).

NR:

description
PREDICTED: nuclear envelope phosphatase-regulatory subunit 1 isoform X1

GO:

id name namespace
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:0010867 positive regulation of triglyceride biosynthetic process biological_process
GO:0071595 Nem1-Spo7 phosphatase complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607691.2 False 907 mRNA 0.44 6 75456602 75459378
XM_021607690.2 False 909 mRNA 0.44 6 75456612 75459378
XM_036980976.1 True 888 mRNA 0.43 6 75456819 75459378

Neighbor

gene id symbol gene type direction distance location
LOC110526592 LOC106587573 coding upstream 89 75454987 ~ 75456513 (+)
LOC110526588 LOC106562377 coding upstream 47927 75393797 ~ 75408675 (+)
LOC110526584 LOC106587566 coding upstream 131966 75316505 ~ 75324636 (+)
LOC110526583 LOC106562374 coding upstream 261912 75168568 ~ 75194690 (+)
LOC110526582 LOC106562373 coding upstream 301074 74922396 ~ 75155528 (+)
heatr3 LOC106587571 coding downstream 281 75459659 ~ 75468641 (+)
tent4b LOC106587575 coding downstream 14665 75474043 ~ 75498286 (+)
LOC110526596 LOC106587576 coding downstream 39318 75498696 ~ 75572903 (+)
LOC110526967 LOC106587577 coding downstream 204991 75664369 ~ 75702602 (+)
nod2 nod2 coding downstream 293559 75752937 ~ 75765291 (+)
G545618 NA non-coding upstream 12250 75443690 ~ 75444352 (+)
G545492 NA non-coding upstream 119584 75335010 ~ 75337018 (+)
G545506 NA non-coding upstream 199374 75257002 ~ 75257228 (+)
G545504 NA non-coding upstream 201022 75255374 ~ 75255580 (+)
G545494 NA non-coding upstream 210359 75245816 ~ 75246243 (+)
G545684 NA non-coding downstream 137787 75597165 ~ 75597427 (+)
G545725 NA non-coding downstream 198917 75658295 ~ 75658516 (+)
G545742 NA non-coding downstream 227369 75686747 ~ 75689195 (+)
G545716 NA non-coding downstream 244112 75703490 ~ 75728642 (+)
G545601 NA other upstream 33850 75421861 ~ 75422752 (+)
G545485 NA other upstream 218438 75237800 ~ 75238164 (+)
G544565 NA other upstream 1168464 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2068915 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2311255 73037953 ~ 73182742 (+)
G546464 LOC106562315 other downstream 468850 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1428054 76827001 ~ 77038395 (+)
G547884 NA other downstream 1818614 77277992 ~ 77279354 (+)
G548000 NA other downstream 2053231 77512609 ~ 77523423 (+)
LOC110526614 mmp2 other downstream 2354997 77814375 ~ 77847797 (+)

Expression


Co-expression Network