tent4b (LOC106587575)


Basic Information

Item Value
gene id tent4b
gene name LOC106587575
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75474043 ~ 75498286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607692.2
GCAGTGTCCGCCATTGAGGACCCACAATCAGAAGGAAAGGGTCAGAAATCGCTTCGATAGGCAATGGTTGCACGTTTCCTTAATTCTTGAATCCAAACTTTGACAACATTCTTTCATTAAACACGACGCCTACTGTCTAATAATAATAGTATCTAATAGTCGTTTTAATTCATGGATAGCAGATTTAGATATTTTATAGCAATTTGAAGTAACCTTCATATCTAACGTTAGTCAGCTGTAAAGCTTAAGAGtgaggttagctagctagctacctggctagCTTTAGCTACACGAACTGAGCCTTGCTCTGGGGCAGTGTGCCTGCACTGTCGTTTGATGGATCCAAGAATCGCTTGGTTTCAGCCAGAACAACGTGGGCCAGCCAACAGCCTGTGGATGCAGATTTGGGAAACAACACAAGGTTTGGGGAATCTGTACTTCAATAACAACTGTAACACGGGTAGTTTGTCTAGCACGTCAAGCCTCAGTCAGAAATCGAACATCAACGGGACATTGGGTAACGTAATATCGAGCAAGAACGGAGCTGTCACTAACAGCGAACCCAGGTACAAGGGAATGTCCAACTCAACGAAAGACAGAGATGTAGTCGAACAACGAGACTTTATTCCGTTGGAAGCTAATAACAACCACAACAACCGTTCATCGCTGGGGAGGGGCAGCGGAGGGGTGCAAGTGGGCTCTGGGGTCTCAGGACACCCCAACAAAAGGAAAAGAGACAACAAGGCTAGCACCTATGGATTCAACAGTAGCCTCGAGACCGGAGGCTGTGGTTACACGGGAACACCATGGAAAGTCAAGAACTACTCTGAAGGAATCTTGGGGCTCCATGAGGAGATCAATGACTTCTACAAGCACATGTCTCCtcgggaagaggaggagaggatgaggatggaGGTGGTGGACAGGATCGAGAGGGTCATCAAAGACCTGTGGCCCACTGCTGACGTTCAAGTGTTTGGGAGTTTCAGCACGGGCCTCTATCTGCCAACCAGTGACATCGATCTGGTGGTGTTTGGGAACTGGGAAAACCTGCCCCTTTGGACCCTGGAAGAGGCCCTGCGGAAGAAAAACGTGACTGACGAGAACTCCATCAAAGTGCTGGACAAGGCCacgGTACCCATCATCAAGCTGACAGACTTCCGCACAGAGGTGAAGGTGGACATCAGCTTCAATGTGAAGAACGGAGTTAAAGCTGCCCTTCTCATCAAAGACTACAAAAAGAAATACCCAGTGCTTCCAAAGTTGGTTCTGGTGCTGAAGCAGTTCCTGCTCCAGAGGGATCTGAATGAGGTTTTCACTGGAGGGATCGGCTCCTACAGCCTTTTCCTTATGGCTGTCAGCTTCCTGCAGCTTCACTACAGAGAAGATGCCTGTAGCCCTAATGCCAACGTGGGCGTTCTCCTTATAGAGTTCTTTGAGCTCTATGGGCGCCACTTCAACTACCTGAAGACGGGCATCCGAATCAAAGATGGCGGCAGCTATGTGGCCAAAGACGAGGTTCAGAAGAGCACTGACCTCTACAGGCCCTCCATGCTCTTCATTGAGGACCCCCTAGCACCAGATAACGACGTTGGCCGCAGCTCATACGGTGTGTTGCAGGTGAAGCAGGCCTTTGACTATGCTTACATAGTGCTCAACCACGCCGTATCGCCCATCGCCAAGTACTACCCAAACAACGAGTCTGAGAGTATACTTGGCAGAATAATCCGGGTGACCCAGGAAGTGGCTGAATACAGGGACTGGATCACCAAGCTCTGGGGACCACAGTCTCAGAATGAACCTGCCCTGAATGGAAATGATGTCACACTGTTAGTGAAGCCTCAGCAGCTGGATGAGTGCAACAACAACCTGACGGAGGAGGTGACTGCATCTCACAGCAAGACCTCCTCCAACTCCTCATTAGTGTCATCCTCATCCTCCACGGTATCCAGTTCCAGCGACGTTGATTCTGACGGGACGCCCTGTAAGACAGTGAAGCAACAGCCTGGGCGGGGCTCCAGCGCCCACAGAGAATCCTCAGGTGGCGTGACCAATCACAGAACACAGAGGCACACCACCAGCACTCCTACTGACAAGGGGGGCAAGGCCAGGTTGATCCGCTCGTCCAGTAAAAACACCCACCACCTCCAGCAGAACTCGTCCTCATCCAACATCAAGAGCCACCCGAGCAGCAAGCCACACTACCAGGGCAACTTCAAGAAGAGGAAACCTCAGCAGCACTCAGAGGCCCAGGACCTCTGCAGATAGGGCTGTCTGGGTCTGCTCTgcaacagactgacagactgactgctgccagactccacactgactgagGAGTAGTATTAAGGATCTTCCTTCTCTCAAGCGACACGCATCTTTTTATAGCTGAAAAATATCCCAAAAAAAGAAATAGGAAATGCTGGGGCTTAGTTCTTGAAAGAAATGCTAATTTTCTtccttgacattaacctgttctACAGTGGAGCTACACACCACATCCAGTACCTACAAATCTTGCCTTTTACCATAGCGCCATCTGGTGTTTTGGAGGAATAAGTGTCTGGAAAGTAATGTAGATTTGGACAAGCAATACCTGGAACTTGGCTGGCGAACGAACTTCAGCaagaaaagtttaaaaaaaagaataaaatacacaaaaacaaaaaTTTACAAAATGTTATATTGAAGAAAGAAGGGGGGGGAAAGTACACAGATTGAAAGACTAAACCCCAAAATGCAATCTGTAAGTGGAGACAATTTTTTTTGATGGGCGGTTATTTTTTGGTTGTAATCAGATTATACAAAGATTTGTACAAAAAAAGACAAACACGCAGAAATGTTTTGAGaaaaaattatcacaagaatggTTTGACTTTTTACAGGATACTACGGATTCAAGGCAAATATATATGTGCACATTTGCCTGCTAATCTGAGTAGTGGCAGGTTAGGGTTTCATTGCCAACATAAATCATCAGCATTCTATTTCTACTTGGCTGCTCTCTCAATGTGTTGACAGGCTTCTTTCCAAATTATACCCATTTCTCAAattagtacactactttcactaaatagggaatagggtgccatttgggatgcactaaCAGTGTTAGCAGTATGCCTTAGTCAGGTAACGTGCACACACAGCCCTATAGATTactggctggctggggacacatcactcattcatacacACAGCCCTATACAACAACAGTGACGGTTTTTAGAGGTTCTCCCAGACTCATAGAATTACAGTTAGAGGACATAATGATTTTAGAAAGATTCTCCACTTGAAATATGTCTAAGATCCATAGGTGTGGGAGGTATTATTTTCCCTTTGGTAATTTACCCATTATGAAAATGTGTATTTGTTCATGTATTTTTCTATTAATGATATGAAAATATAGTACTATACATGTTATACGTATTAACAGGAGAGACCATATTCTTGTATCTTATATTTGGATAGTGGGATATTGGGGAAGTATAATTGGTCAGGTACAGTACCAATGTTGCTGTTTTGTGGCATTTTGTTTTAATATGTGGCTGGTCTACTTTAAAAGGGAGCCGAGTTTTTGGTCAGAATATAATGCAAACAAACACCTCTTTGTTAATGTGTCAACAACCCCTCGCTGAAATGTCTGGTATGTCAACATCTGATTGCAGTTCCACAACTAACCTGTAGATGGTGGCATTACTCGACTCTTCACAGCTGGCACCTTCATACTGCATTTAGACCTTTTCTTCAGTGTCAGTCAAtgtagtcagaccccttgactttatccacattgttacattacagcctgattctaaaattaattaaattgccccccccccccccctcaatctacacacaataccccaaaa
>TU617833
acacacagtgccccaaaatgacaaagcaaaaactgaaattacatttacataagtaatcagaccctttactcagtactttgttgatgcacctttggctgtgatttacagcctcgagtctgcttgggtatgacgctacaagcttagcacacctgtatttgggtaatTTCTCCcatattctctgcagatcctctcaagctctgtcaagttggatggggagagtcttgcacagctattttcaggtctgtgcAAAGTTTtttttgattgggttcaagtctgggctctggctgggccacttaaggacattgtgacttgtcccgaagccacttctatgttgttttggctgtgtgcttagggactttgtcctgttggtaggaacctttgccccagtctgaggttctgagcgttctggagcaggttttcatcaaggatctttgtTCTTTGctcttcatctttccctcgatcctgagtagtatcccagtccctgccgctgaaaaacatccccacaacatgatgctgccaccaccatgcttccccgtagggagggtgccaggtttcctccagacgtgatgcttggtattcaggccaaagagttcaatcttggtttcatcagaccagagaatcttgtttctcatggtcagagtactttaggtgccttttgacagcccgcttggagattgccatgtgccttttactgagtggcttctgtctggccactaccatgaaggcctgatttggtggagtgctgcggagatggttgtccttgtggaaggttttcccatctccacacaggaactctggagctctgtcagagagacttgggttcttggtcacctccctgaccaaggcccttctcccctgctTGCTCTGTTTGGTTGGAAGAGACTTCTTCCATataatggagaccactgtgttcttggggacattcaaaatgtttttgtaaccttccccagatctgtgcctggacacaatcctgtcttggagctcgacggacaattccttcgacctcatggcttggttttcgctctgacTTCCACTGTCAAacgttatatagacaggtgtgcctttccaatcatTTTAATTTATCTCAGGTGGactcccaagttgtagaaacatgaagggtgatcaatggaaacaggatgcactggagctcaattttgagtctcatagcgaagggtctgaataattatgtaaataaggtatgttttattttttataaatttgcaaaaatgtctaaacctttTTTGCTTTGATATTAAGGGGTATTTTGTGTTGATTTTCTTTTTAaacatccattttagaataagtctgactttagaaaatgtggataaagtcatttccgaatgcactgtctgTGCACTAGATAACCTCTGTTTCCATAACCACAACAGGTTTGTTGTTGCCCTTGACAACTCATTGAGGGTTTGATGGGAATGGGGGATAccgagtcagttgtacaacaatgcatttaacccaacccttctgaatcagagaggtgcggggcctgccataatcgacatccacgtcttcggcacccggggaacagtgggttaactgccttgctcaggggcagattGGCAGatgtttacattgtcagctcggggattcaatccaccaacctttcggttactggcccaaagctctaaccaataggctacctgcctgatgatcagttgaatcaggtgtgcttgtccagggttacaataaaaaGGGTTACTGTTGGGGCTACTGGAGAACCAGGGTTGTGAAACACAAGATGATCCACTGGCTGTAATTACATTTATACACATAGTAGGAATGTCTAATTTTAGCTACAATTACTATTTTAGCAAATATGTCAGACAACATATTTGGGCGTTTTTAGATGGTTAAAAATATTGTCTTGGAAAAGTACAGTTTGGACCTAAATGCAGTATATATCTGTGAATTTGATTTGACACTTAGGAAACAAGTCAGGGAACACCCAATGACTTATCTGTGCCGTCACAATCTGTAATCATATCTTCTCACTGCAAGTACTTCAACAAAACTGTATCGACTCATCCAAATTGTAGTTTCTACAGCTATTCAAACCCATGCAATAAAACCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607692.2 False 3866 mRNA 0.46 12 75474043 75496218
TU617833 True 2086 lncRNA 0.44 2 75488005 75498286

Neighbor

gene id symbol gene type direction distance location
heatr3 LOC106587571 coding upstream 5402 75459659 ~ 75468641 (+)
LOC110526593 cnep1r1 coding upstream 14665 75456602 ~ 75459378 (+)
LOC110526592 LOC106587573 coding upstream 17530 75454987 ~ 75456513 (+)
LOC110526588 LOC106562377 coding upstream 65368 75393797 ~ 75408675 (+)
LOC110526584 LOC106587566 coding upstream 149407 75316505 ~ 75324636 (+)
LOC110526596 LOC106587576 coding downstream 2478 75498696 ~ 75572903 (+)
LOC110526967 LOC106587577 coding downstream 168151 75664369 ~ 75702602 (+)
nod2 nod2 coding downstream 256719 75752937 ~ 75765291 (+)
cylda LOC100380700 coding downstream 283198 75779416 ~ 75815231 (+)
LOC118964933 chd9 coding downstream 1108472 76604690 ~ 76620121 (+)
G545618 NA non-coding upstream 29691 75443690 ~ 75444352 (+)
G545492 NA non-coding upstream 137025 75335010 ~ 75337018 (+)
G545506 NA non-coding upstream 216815 75257002 ~ 75257228 (+)
G545504 NA non-coding upstream 218463 75255374 ~ 75255580 (+)
G545494 NA non-coding upstream 227800 75245816 ~ 75246243 (+)
G545684 NA non-coding downstream 100947 75597165 ~ 75597427 (+)
G545725 NA non-coding downstream 162077 75658295 ~ 75658516 (+)
G545742 NA non-coding downstream 190529 75686747 ~ 75689195 (+)
G545716 NA non-coding downstream 207272 75703490 ~ 75728642 (+)
G545757 NA non-coding downstream 237428 75733646 ~ 75734326 (+)
G545601 NA other upstream 51291 75421861 ~ 75422752 (+)
G545485 NA other upstream 235879 75237800 ~ 75238164 (+)
G544565 NA other upstream 1185905 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2086356 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2328696 73037953 ~ 73182742 (+)
G546464 LOC106562315 other downstream 432010 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1391214 76827001 ~ 77038395 (+)
G547884 NA other downstream 1781774 77277992 ~ 77279354 (+)
G548000 NA other downstream 2016391 77512609 ~ 77523423 (+)
LOC110526614 mmp2 other downstream 2318157 77814375 ~ 77847797 (+)

Expression


Co-expression Network