LOC110526967 (LOC106587577)


Basic Information

Item Value
gene id LOC110526967
gene name LOC106587577
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 75664369 ~ 75702602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980977.1
TGCATTGCTGCTCTTTTTATATTTGGAAACTCCGAAAGAATCTCAGCTGGCTTTCATGTGCCGCCTTCGTCCAATAAAACAGAAGAGGGCCTGCCTGCAAGTCGTCTAATCTTGGGCGAGGTGTCAATCATGTTCATTCAGCGGTTGAAGTGCGGGTTTTGGTAACCGCCTCCTTTACGCTTGGAAGCGAGACGAAGGGGGAGCTTTCTTCGGATCAAAGGCTGGTGTGGCGCTGTTGCCGTAGGATGTGCAGAGTGCAGCCTGCTGCTTTCTTTACGGACGCTTTTTGTATCGTCTGGATATCGCTGATTTCTggattataaatacatttgatgtttTTCAATCCCAACTCAATGCAGAGAAATGGGTAAACTTCACTCGAAACATGCTGCGATTTGTAAACCGAGGGAAAGTCCGGAGGGCGACAGTTTTGTAGTTAATGCCTGTTTGGCAAGGAAAGGAATTGACGATTGGCTCGTGAAACAGAAATACTATTGCACGGGTTCGCGGCTTGAGCAACAGGACTGTCACCACACGAATAAGTGCGGCTTGTCTACTCGggATGTGTTGGACAAGGCGTGTGCAGAGGGAATCAGTGATGAACATTACCGTTTAGAAGTGGCTCTGCCCCCGGAGAAGACGGTGGACAgttgctgtgtggaggagaagatgCAGGGGAGAGCGAGCCAGGCGCGCACAGGCACACAGAAACAGCTCCAGTTTGAAGAGCTTGAGTGTGCCGTCTCTGTAGAGGAAGACAACAGACAGGAGTGGACGTTCACGCTGTATGATTTTGACAACAATGGCAAGGTCACCAGAGAGGACATCACCAGCCTGCTCCACACCATCTATGAGGTGGTGGACACGTCGGTCAACCATTCTCCCAGCAGCAGCAAGACACTGCGGGTCAAGCTCTCCGTGGCCCCCGACTCCAGCCAGCGCTGGCAGAGCTGCACACAGGGCACCGCAGACATGCCCCACCCCAGAACGAAGACTGACAAGTGCATTGAAGACCTTAAAGGTTCAGAGAAGAAGTCTCGAGCCCTCCTCAGgcgCCATCACAGTGACCACCACACTATCCAGCACCAGGTTCTGATCCAGCAGGGTCAGAGTCAGGGCTGCCAGCGCCACTGTGTGGATGAGAACCTGGAGCGCAGGAACCACTACCTAGACCTGGCCGGCATCGAGAATTACACATCCCGCTTTGGAGCAGCCCCCACCACAGAGCCTGTGAAAGCAGAGCCACAGACCCGACCATCGAACCAGACCAGGTCTCGCTCTCATGAACCAGAGAATGGCCACACCTACTCCCACCACCGTCGCTCACAGGTGGCCATGGAGAGCAGCGCCGCCCCAGGCCCTGACACCCTTTGTCCCCCACGACCGAGTAAAGACTCAGGTAAACACGCCCTGCGCTCCCCCAAGACCCACAGCCGGACACACCCCACACAGACCACCACGGGCAGGGTGATGAGGAGCAGAGGGGCCCCACCTCCCCCGGCCCTACCCAGCCAGGCCCCCTCTCACCAGTCCTCAGCCCCCTACCGCAGGCACAAGCAGAGGGCCAAGGAGGGCCAGCAGCAGTCCCGGGCCCTGGGGGCTCCAGTGGGGCCTGTGGTGGAGGAGCAGGTGAGGGTCCTACCCAGTGTGCGACTCTATGAAGGAGGGCTGGCCCAGATGGTTCAGAGGCACGAGCATCATCACCACCatgaacaccaccaccactaccaccacttctACCAGTCctgagccaggcagccagctcccTGCCCTGCTGCCCCTGGCCCCTGAGCACCTTCTCACAGTCCCACCTCAACCTGGCTACACTGCCAGCCCAGTAGACTCTACAGATAGACAGGCCCCTCCCACACAGCACAGCAACAGCACAGCTAGAAGTGTGACACTGTCAGGGGGAGTTGGGTCTTACATGGCCCTGTGGGCTAATAGGACAGGACATCAAGAGGAGttggacagacagggagaggtgcAGGGTGAAGAGGGTTATTATGGGGTTGTCCAGGCATGAAGAGTCCCTGTGAGTCAGCGGGACAGTGTCTTGGTCTTCAGGTGTGCCAGGAACCTGGAGCAGGACACGGCAGAGGGATGTAACAGGGGAACCTGAGAGGAACAGAAGGAGAAAAGAGACTTGGCTGTAGTCCTCCAGAGgactcctctcatccctctctgtctgtctggttctctgAAAGCCTCTACTCTGATGGACTAGGTGACTTGGATGGAAAGACTGATGTAAAAAGATAAAATATATGATGCTCAGTGTCCAGTGAGTTTGTGTCCGAGAGAgagactgcgtgtgtgtgtgtgtgtgtgtgattttttttttacacacatttGGGTGTAtgaatatacagtgtgtgtgtgcattggttCATAtgaatatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatagtgtctgtgtgcatgtgttacCTGTCTGCTGTGACACCCCTGTCGCCACTGAAAAGCACTTGTGGCTGCAGTTGCATTGGAGACACTTTGGGCTGTCAGAACAGAGGGCTGACAGGCATCGGCTGGATATGATGAAGACGAGATCATCCATCTCCTGAATCTCACATGCAATACAGGACCCTCCCTGAGAGAACGATGTTGAAATGTTCAGTGAgaatagaagactgtaatcagctgcTACCTCTAGTGTTATTAATGGTgttattattattgctattaaTCAGATGCTATTTTTCAGTTAcatgttgttttattttttaaagatgaCACAATCTGCAGTAATGTAGTGTTGAAACGCTCCTACATGTTTTACCTACATATTGTATATATTATCAACATTATAATCTTTATTTATAATGTGATGTTTGTATCACCAATCTACATTTATTTCTCACTCAACCCCATTTTCCTGATGTACCCTATTGAAAgaccactatatacagtgccttgcgaaagtattcggccccgttgaactttgcaaccttttgccacatttcaggcttcaaacaaagatataaaactgtatttttttgtgaagaatcaa

Function

NR:

description
PREDICTED: protein naked cuticle homolog 1-like

GO:

id name namespace
GO:0003146 heart jogging biological_process
GO:0060971 embryonic heart tube left/right pattern formation biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060061 Spemann organizer formation biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03213 NKD; naked cuticle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980977.1 True 3038 mRNA 0.52 10 75664369 75702602

Neighbor

gene id symbol gene type direction distance location
LOC110526596 LOC106587576 coding upstream 91466 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 168151 75474043 ~ 75498286 (+)
heatr3 LOC106587571 coding upstream 195728 75459659 ~ 75468641 (+)
LOC110526593 cnep1r1 coding upstream 204991 75456602 ~ 75459378 (+)
LOC110526592 LOC106587573 coding upstream 207856 75454987 ~ 75456513 (+)
nod2 nod2 coding downstream 50335 75752937 ~ 75765291 (+)
cylda LOC100380700 coding downstream 76814 75779416 ~ 75815231 (+)
LOC118964933 chd9 coding downstream 902088 76604690 ~ 76620121 (+)
LOC110526968 fto coding downstream 1124399 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 1793151 77495753 ~ 77499433 (+)
G545725 NA non-coding upstream 5853 75658295 ~ 75658516 (+)
G545684 NA non-coding upstream 66942 75597165 ~ 75597427 (+)
G545600 NA non-coding upstream 174318 75419049 ~ 75490051 (+)
G545618 NA non-coding upstream 220017 75443690 ~ 75444352 (+)
G545716 NA non-coding downstream 888 75703490 ~ 75728642 (+)
G545757 NA non-coding downstream 31044 75733646 ~ 75734326 (+)
G545769 NA non-coding downstream 68003 75770605 ~ 75770861 (+)
G545772 NA non-coding downstream 71032 75773634 ~ 75773869 (+)
G545774 NA non-coding downstream 76199 75778801 ~ 75779033 (+)
G545601 NA other upstream 241617 75421861 ~ 75422752 (+)
G545485 NA other upstream 426205 75237800 ~ 75238164 (+)
G544565 NA other upstream 1376231 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 2276682 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 2519022 73037953 ~ 73182742 (+)
G546464 LOC106562315 other downstream 225626 75928228 ~ 75970674 (+)
G547884 NA other downstream 1575390 77277992 ~ 77279354 (+)
G548000 NA other downstream 1810007 77512609 ~ 77523423 (+)
LOC110526614 mmp2 other downstream 2111773 77814375 ~ 77847797 (+)

Expression


Co-expression Network