LOC118964933 (chd9)



Basic Information


Item Value
gene id LOC118964933
gene name chd9
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 76604690 ~ 76620121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_005052241.1
cagccagccagtaagtcagccagttATTCAGTCAGTCAGCAAGGGCCACACAAGGTAACAGACAGGGGAACTTGCAGGCAGCTCCTAACAGCTCTGAACTAAACACGGACTCAGATTCACTTCAGAAAAGCCCTGTCTGAGTCAGTGGAGGAGACCGACAAGCTAACTACCtgactcagtcagtcagtcatgatGTGTAATGTTACCTACCCATCCATGAAGTCATTGGCTCTCTGTTCAGCAGCGATGGCCTTCTCGTCTGGCCGGCCCACCCGCTCTAGGAAGCAGAGGGCAGGGTCTGCACGCACTGTGTTATACTTCTCATAACCTGTATAGTGGACCACAGTGGAGAGacagacagcctgGAGTGTGGGAGGTATCTGTCGGAGAAGGGAACCTCTCTGCCCCAGACATACATGCACATGAGTGTCGTTCTGTGGGTTCCAGTCTGAGTCAAAGATAATACAGGTGTCAGCAGCAGTCAAGTTGATGCCCAGACCTCCAGCCCGGGTACACAGCAGGAACACAAAGCGGTCCGAGTCGGGTTTGCTGAAACGGTCTATAGCTGCCTGACGCAGGTTACCTCTCACTCTGCCATCGATACGCTCATACAGAGAACAAGGTGGTTTAGCACGCTGATCAAGAGCAGCCTCTTTCCCAGGAGCCCTGGCTTCGCCTCACCCCACATCCTACCCCTCATCTTCTTCACCTTACACACCTCACCTCTACAGTGACCCACTTCTCTCCACCCACTCacatactcctctctccctctgtctgatgTGGGAGTTCCCCGAGGGAGTCTGTGACCTGCCGCTGATCCCCGGCTAAGCCTTGCATTGCCACTGAGCGGAGCACCTCGCCTTGTGTGTTTACACTGGTTTGGTTCGGGGTTTGAGTGCCAGAAAGAagcagggaggggagaagaacacAGGGCCAGGCACGGGATagtgagagagacaagaggagaggatagagagagggagaagaagagagaggacagagatatcaggagggaaagggaggaagaTATAGAGAGACCACACAGACCAGGCCAGTTGCCCGCTTTCCTCAGCTTAGACGGGCTGCTGGGATAATATCCTTTTCATTTAGCGTGCAAACAGGAAGCTCATTAAGCCAGGAGATTAAGACCTTGAATGAAAGGGTCTTGGTACATTTTTCTGCTTCTGTTACGCAGTCTTTATCATCTCCCTGCTCTGGGTAGCATTATGGAGTGATGAGCACTGGGGGCTTTAAAAGGCTCTTTCTCAGACAGTCACTGAAGAGCGAGGCTAATGCTTAGATATTCAACATTTCTCTTCAACTACATTCAATTTAATAAGGGAAAGTACTGGAGTGATTCAGCTTTTGTTGCACTGCaaactgctagctagctaacaccagatAATAAACCATAAATACTTCACTTTGAAAATGGAGCTGAAAAA
>XR_005052242.1
cagccagccagtaagtcagccagttATTCAGTCAGTCAGCAAGGGCCACACAAGGTAACAGACAGGGGAACTTGCAGGCAGCTCCTAACAGCTCTGAACTAAACACGGACTCAGATTCACTTCAGAAAAGCCCTGTCTGAGTCAGTGGAGGAGACCGACAAGCTAACTACCtgactcagtcagtcagtcatgatGTGTAATGTTACCTACCCATCCATGAAGTCATTGGCTCTCTGTTCAGCAGCGATGGCCTTCTCGTCTGGCCGGCCCACCCGCTCTAGGAAGCAGAGGGCAGGGTCTGCACGCACTGTGTTATACTTCTCATAACCTGTATAGTGGACCACAGTGGAGAGacagcctgGAGTGTGGGAGGTATCTGTCGGAGAAGGGAACCTCTCTGCCCCAGACATACATGCACATGAGTGTCGTTCTGTGGGTTCCAGTCTGAGTCAAAGATAATACAGGTGTCAGCAGCAGTCAAGTTGATGCCCAGACCTCCAGCCCGGGTACACAGCAGGAACACAAAGCGGTCCGAGTCGGGTTTGCTGAAACGGTCTATAGCTGCCTGACGCAGGTTACCTCTCACTCTGCCATCGATACGCTCATACAGAGAACAAGGTGGTTTAGCACGCTGATCAAGAGCAGCCTCTTTCCCAGGAGCCCTGGCTTCGCCTCACCCCACATCCTACCCCTCATCTTCTTCACCTTACACACCTCACCTCTACAGTGACCCACTTCTCTCCACCCACTCacatactcctctctccctctgtctgatgTGGGAGTTCCCCGAGGGAGTCTGTGACCTGCCGCTGATCCCCGGCTAAGCCTTGCATTGCCACTGAGCGGAGCACCTCGCCTTGTGTGTTTACACTGGTTTGGTTCGGGGTTTGAGTGCCAGAAAGAagcagggaggggagaagaacacAGGGCCAGGCACGGGATagtgagagagacaagaggagaggatagagagagggagaagaagagagaggacagagatatcaggagggaaagggaggaagaTATAGAGAGACCACACAGACCAGGCCAGTTGCCCGCTTTCCTCAGCTTAGACGGGCTGCTGGGATAATATCCTTTTCATTTAGCGTGCAAACAGGAAGCTCATTAAGCCAGGAGATTAAGACCTTGAATGAAAGGGTCTTGGTACATTTTTCTGCTTCTGTTACGCAGTCTTTATCATCTCCCTGCTCTGGGTAGCATTATGGAGTGATGAGCACTGGGGGCTTTAAAAGGCTCTTTCTCAGACAGTCACTGAAGAGCGAGGCTAATGCTTAGATATTCAACATTTCTCTTCAACTACATTCAATTTAATAAGGGAAAGTACTGGAGTGATTCAGCTTTTGTTGCACTGCaaactgctagctagctaacaccagatAATAAACCATAAATACTTCACTTTGAAAATGGAGCTGAAAAA
>XR_005052240.1
gccagccagtaagtcagccagttATTCAGTCAGTCAGCAAGGGCCACACAAGGTAACAGACAGGGGAACTTGCAGGCAGCTCCTAACAGCTCTGAACTAAACACGGACTCAGATTCACTTCAGAAAAGCCCTGTCTGAGTCAGTGGAGGAGACCGACAAGCTAACTACCtgactcagtcagtcagtcatgatGTGTAATGTTACCTACCCATCCATGAAGTCATTGGCTCTCTGTTCAGCAGCGATGGCCTTCTCGTCTGGCCGGCCCACCCGCTCTAGGAAGCAGAGGGCAGGGTCTGCACGCACTGTGTTATACTTCTCATAACCTGTATAGTGGACCACAGTGGAGAGGTCGTTCTGTGGGTTCCAGTCTGAGTCAAAGATAATACAGGTGTCAGCAGCAGTCAAGTTGATGCCCAGACCTCCAGCCCGGGTACACAGCAGGAACACAAAGCGGTCCGAGTCGGGTTTGCTGAAACGGTCTATAGCTGCCTGACGCAGGTTACCTCTCACTCTGCCATCGATACGCTCATACAGAGAACAAGGTGGTTTAGCACGCTGATCAAGAGCAGCCTCTTTCCCAGGAGCCCTGGCTTCGCCTCACCCCACATCCTACCCCTCATCTTCTTCACCTTACACACCTCACCTCTACAGTGACCCACTTCTCTCCACCCACTCacatactcctctctccctctgtctgatgTGGGAGTTCCCCGAGGGAGTCTGTGACCTGCCGCTGATCCCCGGCTAAGCCTTGCATTGCCACTGAGCGGAGCACCTCGCCTTGTGTGTTTACACTGGTTTGGTTCGGGGTTTGAGTGCCAGAAAGAagcagggaggggagaagaacacAGGGCCAGGCACGGGATagtgagagagacaagaggagaggatagagagagggagaagaagagagaggacagagatatcaggagggaaagggaggaagaTATAGAGAGACCACACAGACCAGGCCAGTTGCCCGCTTTCCTCAGCTTAGACGGGCTGCTGGGATAATATCCTTTTCATTTAGCGTGCAAACAGGAAGCTCATTAAGCCAGGAGATTAAGACCTTGAATGAAAGGGTCTTGGTACATTTTTCTGCTTCTGTTACGCAGTCTTTATCATCTCCCTGCTCTGGGTAGCATTATGGAGTGATGAGCACTGGGGGCTTTAAAAGGCTCTTTCTCAGACAGTCACTGAAGAGCGAGGCTAATGCTTAGATATTCAACATTTCTCTTCAACTACATTCAATTTAATAAGGGAAAGTACTGGAGTGATTCAGCTTTTGTTGCACTGCaaactgctagctagctaacaccagatAATAAACCATAAATACTTCACTTTGAAAATGGAGCTGAAAAA
>TU619528
agttATTCAGTCAGTCAGCAAGGGCCACACAAGGTAACAGACAGGGGAACTTGCAGGCAGCTCCTAACAGCTCTGAACTAAACACGGACTCAGATTCACTTCAGAAAAGCGATGGCCTTCTCGTCTGGCCGGCCCACCCGCTCTAGGAAGCAGAGGGCAGGGTCTGCACGCACTGTGTTATACTTCTCATAACCTGTATAGTGGACCACAGTGGAGAGGTCGTTCTGTGGGTTCCAGTCTGAGTCAAAGATAATACAGGTGTCAGCAGCAGTCAAGTTGATGCCCAGACCTCCAGCCCGGGTACACAGCAGGAACACAAAGCGGTCCGAGTCGGGTTTGCTGAAACGGTCTATAGCTGCCTGACGCAGGTTACCTCTCACTCTGCCATCGATACGCTCATACAGAGAACAAGGTGGTTTAGCACGCTGATCAAGAGCAGCCTCTTTCCCAGGAGCCCTGGCTTCGCCTCACCCCACATCCTACCCCTCATCTTCTTCACCTTACACACCTCACCTCTACAGTGACCCACTTCTCTCCACCCACTCacatactcctctctccctctgtctgatgTGGGAGTTCCCCGAGGGAGTCTGTGACCTGCCGCTGATCCCCGGCTAAGCCTTGCATTGCCACTGAGCGGAGCACCTCGCCTTGTGTGTTTACACTGGTTTGGTTCGGGGTTTGAGTGCCAGAAAGAagcagggaggggagaagaacacAGGGCCAGGCACGGGATagtgagagagacaagaggagaggatagagagagggagaagaagagagaggacagagatatcaggagggaaagggaggaagaTATAGAGAGACCACACAGACCAGGCCAGTTGCCCGCTTTCCTCAGCTTAGACGGGCTGCTGGGATAATATCCTTTTCATTTAGCGTGCAAACAGGAAGCTCATTAAGCCAGGAGATTAAGACCTTGAATGAAAGGGTCTTGGTACATTTTTCTGCTTCTGTTACGCAGTCTTTATCATCTCCCTGCTCTGGGTAGCATTATGGAGTGATGAGCACTGGGGGCTTTAAAAGGCTCTTTCTCAGACAGTCACTGAAGAGCGAGGCTAATGCTTAGATATTCAACATTTCTCTTCAACTACATTCAATTTAATAAGGGAAAGTACTGGAGTGATTCAGCTTTTGTTGCACTGCaaactgctagctagctaacaccagatAATAAACCATAAATACTTCACTTTGAAAATGGAGCTGA

Function


symbol description
chd9 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be located in nucleus. Is expressed in female organism. Orthologous to human CHD9 (chromodomain helicase DNA binding protein 9).

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 6-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_005052241.1 False 1448 mRNA 0.51 5 76604690 76620121
XR_005052242.1 False 1444 mRNA 0.51 5 76604690 76620121
XR_005052240.1 False 1371 mRNA 0.50 4 76604692 76620121
TU619528 True 1234 lncRNA 0.50 4 76604711 76620117

Neighbor


gene id symbol gene type direction distance location
cylda LOC100380700 coding upstream 789459 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 839399 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 902088 75664369 ~ 75702602 (+)
LOC110526596 LOC106587576 coding upstream 1031787 75498696 ~ 75572903 (+)
tent4b LOC106587575 coding upstream 1108472 75474043 ~ 75498286 (+)
LOC110526968 fto coding downstream 206880 76827001 ~ 77038395 (+)
irx5a irx5 coding downstream 875632 77495753 ~ 77499433 (+)
LOC110526613 LOC106587615 coding downstream 1103704 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 1194259 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 1228841 77848962 ~ 77866316 (+)
G547163 NA non-coding upstream 81090 76522782 ~ 76523600 (+)
G546947 NA non-coding upstream 171409 76430843 ~ 76433281 (+)
G546907 NA non-coding upstream 205666 76389560 ~ 76399024 (+)
G546900 NA non-coding upstream 230226 76374193 ~ 76374464 (+)
G546886 NA non-coding upstream 250038 76354429 ~ 76354652 (+)
G547239 chd9 non-coding downstream 6077 76626198 ~ 76629445 (+)
G547183 NA non-coding downstream 21310 76641431 ~ 76641992 (+)
G547278 NA non-coding downstream 56376 76676497 ~ 76677048 (+)
G547300 NA non-coding downstream 85503 76705624 ~ 76706152 (+)
G547303 NA non-coding downstream 90136 76710257 ~ 76710510 (+)
G546464 LOC106562315 other upstream 634016 75928228 ~ 75970674 (+)
G545601 NA other upstream 1181938 75421861 ~ 75422752 (+)
G545485 NA other upstream 1366526 75237800 ~ 75238164 (+)
G544565 NA other upstream 2316552 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 3217003 73190979 ~ 73392251 (+)
G547884 NA other downstream 657871 77277992 ~ 77279354 (+)
G548000 NA other downstream 892488 77512609 ~ 77523423 (+)

Expression



Co-expression Network