Item | Value |
---|---|
gene id | LOC110526968 |
gene name | fto |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048570.1 |
NCBI id | CM023224.2 |
chromosome length | 101096859 |
location | 76827001 ~ 77038395 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
fto | Predicted to enable several functions, including DNA-N1-methyladenine dioxygenase activity; RNA N6-methyladenosine dioxygenase activity; and ferrous iron binding activity. Acts upstream of or within several processes, including cilium assembly; left/right pattern formation; and positive regulation of canonical Wnt signaling pathway. Predicted to be located in cytoplasm and nuclear speck. Human ortholog(s) of this gene implicated in obesity. Orthologous to human FTO (FTO alpha-ketoglutarate dependent dioxygenase). |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036980994.1 | False | 2679 | mRNA | 0.54 | 10 | 76827001 | 76950160 |
XM_036980992.1 | False | 5080 | mRNA | 0.49 | 10 | 76827001 | 77038395 |
XM_036980993.1 | False | 5077 | mRNA | 0.49 | 10 | 76827001 | 77038395 |
TU619876 | False | 1474 | TUCP | 0.49 | 6 | 76887432 | 77036313 |
TU619877 | False | 536 | lncRNA | 0.54 | 3 | 76887579 | 76940847 |
TU619874 | False | 1903 | lncRNA | 0.46 | 2 | 77036420 | 77038391 |
TU619875 | True | 1413 | lncRNA | 0.42 | 2 | 77036420 | 77038391 |
76,840,000
76,880,000
76,920,000
76,960,000
77,000,000
77,040,000
77,040,000
77,080,000
77,120,000
77,160,000
77,200,000
77,240,000
NC_048570.1
Loading
Loading
Loading
Loading
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118964933 | chd9 | coding | upstream | 206880 | 76604690 ~ 76620121 (+) |
cylda | LOC100380700 | coding | upstream | 1011770 | 75779416 ~ 75815231 (+) |
nod2 | nod2 | coding | upstream | 1061710 | 75752937 ~ 75765291 (+) |
LOC110526967 | LOC106587577 | coding | upstream | 1124399 | 75664369 ~ 75702602 (+) |
LOC110526596 | LOC106587576 | coding | upstream | 1254098 | 75498696 ~ 75572903 (+) |
irx5a | irx5 | coding | downstream | 457358 | 77495753 ~ 77499433 (+) |
LOC110526613 | LOC106587615 | coding | downstream | 685430 | 77723825 ~ 77730489 (+) |
LOC110526614 | mmp2 | coding | downstream | 775985 | 77814375 ~ 77847797 (+) |
LOC110526615 | pcat2 | coding | downstream | 810567 | 77848962 ~ 77866316 (+) |
LOC118965105 | NA | coding | downstream | 924854 | 77963249 ~ 77963303 (+) |
G547514 | NA | non-coding | upstream | 7770 | 76818961 ~ 76819231 (+) |
G547455 | NA | non-coding | upstream | 55651 | 76771081 ~ 76771350 (+) |
G547419 | NA | non-coding | upstream | 77934 | 76745584 ~ 76749067 (+) |
G547418 | LOC106604990 | non-coding | upstream | 84599 | 76742139 ~ 76742402 (+) |
G547415 | NA | non-coding | upstream | 87480 | 76738710 ~ 76739521 (+) |
G547757 | NA | non-coding | downstream | 32136 | 77070531 ~ 77070771 (+) |
G547800 | NA | non-coding | downstream | 76725 | 77115120 ~ 77115366 (+) |
G547803 | NA | non-coding | downstream | 78091 | 77116486 ~ 77116711 (+) |
G547810 | NA | non-coding | downstream | 96742 | 77135137 ~ 77135346 (+) |
G547835 | NA | non-coding | downstream | 150275 | 77188670 ~ 77188881 (+) |
G546464 | LOC106562315 | other | upstream | 856327 | 75928228 ~ 75970674 (+) |
G545601 | NA | other | upstream | 1404249 | 75421861 ~ 75422752 (+) |
G545485 | NA | other | upstream | 1588837 | 75237800 ~ 75238164 (+) |
G544565 | NA | other | upstream | 2538863 | 74287778 ~ 74288138 (+) |
LOC100136290 | sox6 | other | upstream | 3439314 | 73190979 ~ 73392251 (+) |
G547884 | NA | other | downstream | 239597 | 77277992 ~ 77279354 (+) |
G548000 | NA | other | downstream | 474214 | 77512609 ~ 77523423 (+) |
G548703 | NA | other | downstream | 1382465 | 78420860 ~ 78496470 (+) |
G547534 | NA | non-coding | upstream | 28453 | 76858892 ~ 76859126 (+) |
G547528 | NA | non-coding | upstream | 45604 | 76841500 ~ 76841975 (+) |
G547527 | NA | non-coding | upstream | 49723 | 76837648 ~ 76837856 (+) |