irx5a (irx5)


Basic Information

Item Value
gene id irx5a
gene name irx5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77495753 ~ 77499433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607721.2
agcgtggagaaaaaagaaaacatggagagagagagagagataggcagggCTGTGGTATTAACCCAGCATAGGCTTGCCTTTTCCTTCGATGACTACACCCCGATAGGAGGAGCGTGAAGAACGTAGTAGGCGTCAGAATCCTCAATTTCCAACTTAGCATCTTGGCAGGACATTTTCCCAAGCAAAGCCCCCATCCGAAGGCAAAAAACTTCTTCTGCACGGCATGAGACAGAgtgagcaagtgagagagagataggaaaaaTAGAGCGTAGCAAGCAAACACAACGGTCAGTTGAAGCTGACTATCAGCGACAAAAAAATCTATATCTAAGTCTAtgtatttgtttatatttttgctttTTACCACAATCATTTAGAGGGGAACAGACAGCGGTCTGTTGATACGAGACTCCTATGACTGAAATCGGACAGTGCATGATAAAATAAAGAGGAAAAGTGCGCAAGTAAGTGGCTTACTTTCGGGGCTTTCACCATGGCGTATCCTCAGGGCTATTTGTACCAGCCATCCGCTTCGTTGGCGCTGTATTCATGCCCGGCGTACAGCACCAGCGTAATATCGGGACCCAGGACCGAAGAACTTGGTAGATCCTCATCTGGCTCAGCTTTTGCTCCCTATGCCGGAACTACCGCGTTCACCAGCGCTTCGCCCGGGTACAACTCCCATCTCCCGTACAGTGCGGAGGCGGGAGCGGCCGCCACATTCGCTTCATACGTGAGTTCTCCCTATGACCACACGACGGGAATGGCTGGGTCTATAGGATATCACCCCTACGCTGCTCCCCTGGGTTCATACCCCTACGGTGACCCGGCATACCGAAAAAACGCGACCCGTGATGCCACGGCCACTCTCAAAGCCTGGTTGAACGAGCACCGTAAGAACCCCTACCCCACCAAGGGGGAGAAGATCATGCTGGCCATCATCACCAAAATGACCCTCACCCAAGTTTCCACCTGGTTCGCCAACGCCAGGAGGAGGCTAAAGAAGGAGAACAAGATGACCTGGACTCCCCGAAACCGGAGCGAGGACGAGGAGGAAGACGAGAACATCGATCTGGAAAAGAATGACGACGACGAGCCTAGCAAGCCGACAGACAAGGGAGACTCGACAGACACAGAGTCAGATCATAAATTGCTGAACCCGGGGGACATAGTGTGcgacagatttaaagaggagaaTCATGGCAAAGAAACGGATCCCCTTCTGAGTGACTCGGAATTAAAAGACCAGGGGGATCGGACAGAGTTACTGCCCGAGTCTGCTAAACCCACCACCTCGTCTCCAACCGCCGTGCCTCGGGGAGGAACCGAGCTCGTTGCGCAAGACAAGCCGTCAGAAATGGGCCATGCGCCGGGCACGGTAAACAGCAACGTGACGTCTGTTATTCACTCCTCCCCATCGGCCCCTAAACCCAAACTCTGGTCCCTGGCTGAGATCGCAACGTCCTCAGACAGGTGTAAGAGCAGCCACGACGGGCCGCAGGGCCATGGGATGGGTCACAGCACAGTGATCACCACCAATGCAGCGTCACCATCACGGTCCTCCCCACAGTGCCCTCTCCCAAACAGCACAGTCCTATCCAGGCCTATCTACTACACGTCCCCTTTTTACCCGGGCTACACGAACTATGGCAGCTTTGGACATCTTCACAGTCACAACAATCACGGCTCAGGCACGGGCTCCACGGCACATTTCAATGGATTAAACCAGACTGTGTTAAATAGAGCAGAAGCTTTGGTAAGAGAAAGCCAGAAAGGCAGAGGCCAAACGCAGGTAGATCTTTGTAAAGACTCCCCTTATGAACTAAAGAAAGGTATGTCAAACATTTAATACCTTGATCCCTTTCAAAAATCCATCggacttttatttattatttgtgGTTGCATtacaaaaaataagaaaaataataattataaaggAAAATTCTGAGAACAGTTATTTTCTGAGTAAATGCTTAACTTCAAATCTTAGTTTCTGAATGGTTAATCCTAATGATGTAACAAGAATGGTCTTCATCGCTGCAGCCACCTGAGTCTATTTGTATTAAAGACTAATATGTATATTTAATGTAGCATTTTTGTATTTAAAATGGACAATACACTATCTTTGAAGTAAATTATGAGAAAAAAATACA

Function

symbol description
irx5 Enables sequence-specific double-stranded DNA binding activity. Involved in embryonic cranial skeleton morphogenesis and gonad development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
iroquois-class homeodomain protein IRX-5-like

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607721.2 True 2153 mRNA 0.48 4 77495753 77499433

Neighbor

gene id symbol gene type direction distance location
LOC110526968 fto coding upstream 457358 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 875632 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1680522 75779416 ~ 75815231 (+)
nod2 nod2 coding upstream 1730462 75752937 ~ 75765291 (+)
LOC110526967 LOC106587577 coding upstream 1793151 75664369 ~ 75702602 (+)
LOC110526613 LOC106587615 coding downstream 224392 77723825 ~ 77730489 (+)
LOC110526614 mmp2 coding downstream 314947 77814375 ~ 77847797 (+)
LOC110526615 pcat2 coding downstream 349529 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 463816 77963249 ~ 77963303 (+)
LOC110526617 LOC106562414 coding downstream 468734 77968167 ~ 78042147 (+)
G547980 NA non-coding upstream 15937 77479605 ~ 77479816 (+)
G547963 NA non-coding upstream 58722 77436159 ~ 77437031 (+)
G547962 NA non-coding upstream 61665 77433866 ~ 77434088 (+)
G547896 NA non-coding upstream 184710 77310404 ~ 77311043 (+)
G547892 NA non-coding upstream 187489 77306684 ~ 77308264 (+)
G548024 NA non-coding downstream 46924 77546357 ~ 77548387 (+)
G548033 NA non-coding downstream 68880 77568313 ~ 77568950 (+)
G548315 NA non-coding downstream 150148 77649581 ~ 77649791 (+)
G548317 NA non-coding downstream 151562 77650995 ~ 77651198 (+)
G548347 NA non-coding downstream 183180 77682613 ~ 77682835 (+)
G547884 NA other upstream 216399 77277992 ~ 77279354 (+)
G546464 LOC106562315 other upstream 1525079 75928228 ~ 75970674 (+)
G545601 NA other upstream 2073001 75421861 ~ 75422752 (+)
G545485 NA other upstream 2257589 75237800 ~ 75238164 (+)
G548000 NA other downstream 13176 77512609 ~ 77523423 (+)
G548703 NA other downstream 921427 78420860 ~ 78496470 (+)
G549342 NA other downstream 1269823 78769256 ~ 78769907 (+)

Expression


Co-expression Network