LOC110526614 (mmp2)


Basic Information

Item Value
gene id LOC110526614
gene name mmp2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 77814375 ~ 77847797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607728.2
TAGCCTACACTTCCCGTTGAAAGCAGCATACAAAATTGCATGTGTAAGCACAACTGAGTTAGCAGACCTGGGTTGCAGTGCAGAATGTCCCGTTGAGGAGAAGATAAAGCAACAGAAGAGGCAAGAGGACATCCAACCCAGAAACGTTCTGTTTTTCTCCATCCTGATTACATACACAGCGATTCTCCACCGGGGAAAGATGGGGTGCCAGACGGCATTTAGCCCCCGACACCTTGTCCTCAAAGTGTTTTTGGTACAGTTAATCGCCTTTCTCCAGAAAACCTCTGCAGCCCCCTCGCCCATTATCAAGTTCCCAGGAGACGATAGTCCAAAAACAGACAAAGAAGTGGCTCTGCACTATCTGAACAAGTTCTATGGCTGCCCACAAGACAGATGTAATctcatggtgctgaaagacacCCTGAAGAAGATGCAGAAGTTCTTCTCTCTGCAAGAGACGGGCGAGATCGACCCCAAGACAGTGGAGATCATGAAGAAGCCCCGCTGTGGAGTTCCTGATGTTGCCCAATACAACTTCTTCCACAGGAAACCCAAGTGGCAGCAAAACGCCATCACCTACAGGATTCTAGGCCACTCTCCTGACCTGGACGAGGAGACTATTGATGACGCCTTCTTAAGGGCCTTCAAAGTCTGGAGTGACGTCACCCCACTCAAGTTCACCCGCCTCATGGATGGAGAGGCTGACATCATGATTAACTTTGGCCGCAACGAGCATGGTGATGGCTACCCCTTCGATGGTAAAGATGGTCTGCTGGCTCATGCCTTCGCTCCTGGACCAGGCACCGGAGGAGACTCCCACTTTGATGACGACGAGCAGTGGACACTGGGAGAAGGACAAGtTGTGAAGGTGAAGTTTGGTAATGCAGAGGGGGAGTTCTGTAAGTTCCCCTTCATGTTTATGGGGAAGGAGTACAACAGCTGTACCAATCAGGGCCGTGATGATGGATTCCTCTGGTGCTCCACCACATACAACTTTGACGACGACGGCAAATACGGTTTCTGTCCCCATGAGTTGCTGTTCACCCTGGGTGGAAACGCGGACGGAGCTCCCTGTAAGTTCCCCTTCACGTTCCAAGGGGAGAACTATGATGGTTGCACCACTCAGGGGCGTGACGACGGCTACCGCTGGTGTGCTACGACTGAGAACTATGACAATGACAAGTCCTACGGGTTCTGCCCTGAAACAGCCATGTCCACCGTTGGAGGAAACTCTGAGGGTTCCCCCTGTGTGTTCCCCTTCACGTTCCTTGGAGACACTTATGACAGTTGCACTGCTTCTGGACGTAGCGACGGTAAGATGTGGTGCGCCTCCACCAAGAGCTACGACGACGACCGCAAGTGGGGCTTCTGTCCTGATCAAGGCTACAGTCTGTTCCTGGTTGCGGCCCATGAGTTTGGCCACGCCCTGGGCTTGGAACACTCCCAGGACCCTGGTGCTCTGATGGCCCCCATGTACACCTTCACCAAGAACTTTAGACTGTCCAACGACGACATCAAGGGCATCCAGGAGCTCTATGGTACTGGTACAGACAAGCCTGTGCCTCCCACCCAGGGCCCAGTCACTCCTATGGACATCTGTAATGAACCTGTGGTGTTTGATGCTGTGGCCCAGATCAGAGGAGAGACCTTCTTCTTCAAGGACAGGTTCATATTCAGGTCAACCAACTTCCGGGGCAAGCCTTCAGGTCCCATGCTGGTAGCCACCTACTGGCCTGAGCTCCCGGTCACTATCGACGCTGCCTATGAGAACCCACTGGAGGAGAAGACTGTGTTCTTTGCAGGCAATGAGATGTGGATCTTCAATGCAGACCAGATAGAGAAAGGCTACCCCAAGAGGATCTCCTCTATAGGCCTGCCCACAGACCTGAAAGGCATTGATGCAGCCTTCTCCTTTGGAAAGAGCCAGAAGACCTACCTGTTCGCTGGAGACCAGTTCTGGAGGTACAATGAAGCCAAGAAAAAGATGGATCCTGGCTTCCCCAAGCTCATCGCTGACTCCTGGAACGGAATCCCAGACGGCATTGACTCTGCCTTTAGTCTGAATGGCATCGATTACACCTACTTCTTCAAAGGTGCCCACTACTTCAAAATGGATGACAGTAGCCTGAAGATCGTCAAACTGGGCGAGATTACAAAGGACTGGCTGGGTTGTCACTAAGCAACAGTGAGACGCATAGACGTTGGCTAAGCTCTCAGCAGACTGATTCCCCCATCCCTATCCAACCAGCCTATCCTGCACCCTAGCCTAGAAACTAAAGACACCCTCTAACACACCGTGGGACCATCTACACAGGCTGAACATAGGCAACAGGATTTTGTATTATATTACTGTGTGATATTATCAGTTTCTATGTTATGATGATGCAGATTTACTTGGATCTCTCCACCTCGTTGTTTGTTGTTAGAAACTCAGACATCCGGTATGTCCACACTACATAGAGACAGGCAGTGTTGTACTGGAAGATATTCTCCTATATAAATGTAGCTTCACCTGAGCAGTATTGCATCACCTGAAGAATGAATGCTGTCTATATTTACTGCTGTCTGCAATCTAGAGACTACATGATACCGCAATAGAATGAGAAATAGTCAATAGCAATTACAGTGTTGtggaatacatttgaaaatatgaatttgCACAATATGTCTGGACAGATGATGGTGCTTATAGAAAATGTTTATTTGCATGATCCTATATTTGATATGCAGTTTTTCTACATTCTGTTCAGACTATTTTCAGAAGTAAGTACTTATAGACACACCTTATTCTTCAAATAGGGCTAGCACTTTGTATTAGACTATACAGGGGTACTGCACAAATATGGAGACCAAATTCTCCATTTTGTAGGATCTGTCTATTGTTTCACTGATGGTACAGGGAGATGAAAGGCACGGACTGCCTAGAGACTGTATCTGGTTTGTTGTTGCATGATGGAGTCATGACAAGAGAAGTACCACAGAAGTATTGTGTAATAatctttttgttttgttgttttgataGTCGTTTTGATTCGTATGCTTTTTTATAATGTTTTGTGCAATGTGTCATTCTCTGTCTGTAAAATAATAAAGATGGATGGTCAatat
>TU620974
GTCTGTAGCCTACACTTCCCGTTGAAAGCAGCATACAAAATTGCATGTGTAAGCACAACTGAGTTAGCAGACCTGGGTTGCAGTGCAGAATGTCCCGTTGAGGAGAAGATAAAGCAACAGAAGAGGCAAGAGGACATCCAACCCAGAAACGTTCTGTTTTTCTCCATCCTGATTACATACACAGCGATTCTCCACCGGGGAAAGATGGGGTGCCAGACGGCATTTAGCCCCCGACACCTTGTCCTCAAAGTGTTTTTGGTACAGTTAATCGCCTTTCTCCAGAAAACCTCTGCAGCCCCCTCGCCCATTATCAAGTTCCCAGGAGACGATAGTCCAAAAACAGACAAAGAAGTGGCTCTGCACTATCTGAACAAGTTCTATGGCTGCCCACAAGACAGATGTAATctcatggtgctgaaagacacCCTGAAGAAGATGCAGAAGTTCTTCTCTCTGCAAGAGACGGGCGAGATCGACCCCAAGACAGTGGAGATCATGAAGAAGCCCCGCTGTGGAGTTCCTGATGTTGCCCAATACAACTTCTTCCACAGGAAACCCAAGTGGCAGCAAAACGCCATCACCTACAGGATTCTAGGCCACTCTCCTGACCTGGACGAGGAGACTATTGATGACGCCTTCTTAAGGGCCTTCAAAGTCTGGAGTGACGTCACCCCACTCAAGTTCACCCGCCTCATGGATGGAGAGGCTGACATCATGATTAACTTTGGCCGCAACGAGCATGGTGATGGCTACCCCTTCGATGGTAAAGATGGTCTGCTGGCTCATGCCTTCGCTCCTGGACCAGGCACCGGAGGAGACTCCCACTTTGATGACGACGAGCAGTGGACA

Function

symbol description
mmp2 Predicted to enable metalloendopeptidase activity. Acts upstream of or within several processes, including hematopoietic stem cell migration; lymph vessel development; and neurogenesis. Located in sarcomere. Is expressed in several structures, including cardiovascular system; digestive system; nervous system; ovarian follicle; and trunk musculature. Human ortholog(s) of this gene implicated in artery disease (multiple); eye disease (multiple); pseudoxanthoma elasticum; and temporal arteritis. Orthologous to human MMP2 (matrix metallopeptidase 2).

NR:

description
72 kDa type IV collagenase-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005581 collagen trimer cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607728.2 False 3108 mRNA 0.48 13 77814380 77847797
TU620974 True 849 TUCP 0.51 4 77814375 77817061

Neighbor

gene id symbol gene type direction distance location
LOC110526613 LOC106587615 coding upstream 83891 77723825 ~ 77730489 (+)
irx5a irx5 coding upstream 314947 77495753 ~ 77499433 (+)
LOC110526968 fto coding upstream 775985 76827001 ~ 77038395 (+)
LOC118964933 chd9 coding upstream 1194259 76604690 ~ 76620121 (+)
cylda LOC100380700 coding upstream 1999149 75779416 ~ 75815231 (+)
LOC110526615 pcat2 coding downstream 1165 77848962 ~ 77866316 (+)
LOC118965105 NA coding downstream 115452 77963249 ~ 77963303 (+)
LOC110526617 LOC106562414 coding downstream 120370 77968167 ~ 78042147 (+)
LOC110525051 LOC106587608 coding downstream 239419 78087216 ~ 78088746 (+)
LOC110526620 lt4r1 coding downstream 241110 78088907 ~ 78090301 (+)
G548457 NA non-coding upstream 1842 77812333 ~ 77812538 (+)
G548441 NA non-coding upstream 35642 77772450 ~ 77778738 (+)
G548442 NA non-coding upstream 36229 77775657 ~ 77778151 (+)
G548347 NA non-coding upstream 131545 77682613 ~ 77682835 (+)
G548317 NA non-coding upstream 163182 77650995 ~ 77651198 (+)
G548472 NA non-coding downstream 9004 77856801 ~ 77857727 (+)
G548498 NA non-coding downstream 86281 77934078 ~ 77935551 (+)
G548570 NA non-coding downstream 269294 78117091 ~ 78117850 (+)
LOC110526621 LOC106587617 non-coding downstream 272992 78103895 ~ 78127426 (+)
G548000 NA other upstream 290957 77512609 ~ 77523423 (+)
G547884 NA other upstream 535026 77277992 ~ 77279354 (+)
G546464 LOC106562315 other upstream 1843706 75928228 ~ 75970674 (+)
G545601 NA other upstream 2391628 75421861 ~ 75422752 (+)
G548703 NA other downstream 573063 78420860 ~ 78496470 (+)
G549342 NA other downstream 921459 78769256 ~ 78769907 (+)
G549345 NA other downstream 924315 78772112 ~ 78772557 (+)
LOC110526645 unc13c other downstream 1303567 79089592 ~ 79354959 (+)
G548464 NA non-coding downstream 554 77817615 ~ 77817837 (+)
G548466 NA non-coding downstream 10165 77827226 ~ 77827884 (+)
G548467 NA non-coding downstream 13836 77830897 ~ 77831676 (+)

Expression


Co-expression Network