LOC110525051 (LOC106587608)


Basic Information

Item Value
gene id LOC110525051
gene name LOC106587608
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78087216 ~ 78088746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110525051
CTTAGGAAACAGCAGTTGACTGCAGTGCAAAATGAAGAGCTCGGGCTCCTCCATCTCAGACGATGATGATGCATTGTTTAATGAAACATCAACCATAGGGCGATCAGTAGTCTGTGTGATCCTGGGCCTGTCGTTCCTGGTGGGGGTCCCGGGGAACCTGCTGGTGATCTGGACCATCCTCAGGCACGTCCAGCAGCGCTCCCACACCGTGGTGCTCATCCTCCACCTGGCTGCTGCAGACCTGCTGGTGCTCATCACCCTGCCCCTGTGGATCTACTCCCTCCCTGGCCCGCTCCTGGGTGTTCGGGGAGACATCCTGTAAGGCCATGGTGTACGTCATCAACACCTGCATGTACAGCAGCGTCTTCCTCATCACCCTCATGAGCGTTGAGCGCTTCCTTGTCATCCGGTACCCGTTCAAGATGTTGCGTTGGAAGACCAAGGCCATTATGGACTCTGGGTTCTGGCTTTCCTTTTAGGGATCCCATCCATTCTTACCCGCTCCATCAATGAGATCGATGGGACTGAGCAGTGTCTTTTCAGGGAGTACAGCTCAGTGGCCCAAGAGGTGGTGTTCTTATGCCTGGAGACCTTGGTGGGCTTCGTGGTCCCCTTCTCCACCCTGGCTGTCTGTTCCTGTCTAGTAGCAACACACATGAGGACAATGCATTTCGGCAGCAGCAAACAGAAGTCGACAGTTCtgatcagtagtgtgtgtggtggtagcCTTCGTTCTCTGCTGGCTTCCTCATCATGTCCTCAACACTGTAGACCTAGTCAGCATCCTGACAGAGGATCCAGATGATGTTGTGCCTGTTTCAGTGGCCCAGACTGCAATAGTGTTTATCTCTGGAGTGCTGGCCTTCATTAGTAGCTCTGTGAACCCTGTGTTCTATTCCTTCGCTGCAAGGAACTTCCAGGGCAGTCTCCAGGAGTCCCGCATGATCAGGCTGTTCCAGGAACTCTTCTCACACACCTCCTCCAAGCTAAGGGGATCTGGCAACACAATAGGATCTGGCAACACAATAGGATTGGAAAACACAATGTCCTCAGTAAGGCCAGACTGCAACAATACCACAGACATAACTACCGTGTAGGACTACAGAGATGGTGGCGCTGGATAAGAGCATTCTGGataagtcgttctggataagagcgcctgctaaatgactaaaatgtcaaatgaaaaCTGTGACCTGATCATTGATTAAGATGTCAGCATTGATGAGAAATAAATATGTCTAGAATCTAGAAGTTTGATTAACAGTTGTATTTTTATGATCATGGTACAAAATGTAGATATTGTTGTGGTCCTTGTGATATACGGTGAGAAAAGCTCACACAAGTAATTCAATTGTGACTATTTCAACACAATAAAGCGATTGCATTTTCTCATAAAGTGGTATAATCTAAATAACATTTATTCATGGTCATGTTACAATTCCTTGaatattatttgatttattttatttaacctttattttgtcTTGAAATTCATGTTACATAAAATAACACACTGCCTTACTCTATT

Function

NR:

description
PREDICTED: leukotriene B4 receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110525051 True 1531 mRNA 0.47 1 78087216 78088746

Neighbor

gene id symbol gene type direction distance location
LOC110526617 LOC106562414 coding upstream 45069 77968167 ~ 78042147 (+)
LOC118965105 NA coding upstream 123913 77963249 ~ 77963303 (+)
LOC110526615 pcat2 coding upstream 220900 77848962 ~ 77866316 (+)
LOC110526614 mmp2 coding upstream 239419 77814375 ~ 77847797 (+)
LOC110526613 LOC106587615 coding upstream 356727 77723825 ~ 77730489 (+)
LOC110526620 lt4r1 coding downstream 161 78088907 ~ 78090301 (+)
LOC110526621 LOC106587617 coding downstream 15149 78103895 ~ 78127426 (+)
LOC110526623 LOC106587623 coding downstream 131788 78220534 ~ 78224155 (+)
LOC110526624 LOC105022628 coding downstream 137617 78226363 ~ 78358769 (+)
LOC110526630 LOC106562411 coding downstream 277987 78366733 ~ 78379992 (+)
G548498 NA non-coding upstream 151665 77934078 ~ 77935551 (+)
G548472 NA non-coding upstream 229489 77856801 ~ 77857727 (+)
G548467 NA non-coding upstream 255540 77830897 ~ 77831676 (+)
G548466 NA non-coding upstream 259332 77827226 ~ 77827884 (+)
G548570 NA non-coding downstream 28345 78117091 ~ 78117850 (+)
G548573 NA non-coding downstream 39447 78128193 ~ 78188167 (+)
G548642 NA non-coding downstream 158990 78247736 ~ 78248253 (+)
G548629 NA non-coding downstream 263262 78352008 ~ 78409500 (+)
G548000 NA other upstream 563793 77512609 ~ 77523423 (+)
G547884 NA other upstream 807862 77277992 ~ 77279354 (+)
LOC110526968 fto other upstream 1050903 76827001 ~ 77038395 (+)
G548703 NA other downstream 332114 78420860 ~ 78496470 (+)
G549342 NA other downstream 680510 78769256 ~ 78769907 (+)
G549345 NA other downstream 683366 78772112 ~ 78772557 (+)
LOC110526645 unc13c other downstream 1062618 79089592 ~ 79354959 (+)
G550054 NA other downstream 1390735 79479481 ~ 79480078 (+)

Expression


Co-expression Network