LOC110526623 (LOC106587623)


Basic Information

Item Value
gene id LOC110526623
gene name LOC106587623
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78220534 ~ 78224155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607749.2
TGGAATTAAAtgtttgaaaaaaaaatacagtcCGGTAAAAACGTATTTCACGGAAGCATTTGATAAATTATACACTATAATGAAATACAACAGAAACGATATTGTCTATTTTTTGGTGAAGACGTGCACCAGCTGATTCCTCCTATCTAACTTACCATCAGAATGCAGTCTGTGAAGGTCGGCTACTCAGTGTTGTTTACGTTGATATCAAAACACAACTACTCGTCCTCGGGTCATTTCAGAGCACTAGCATGTATTCATGGTACAATCAGTTCAGCCTGTACTGTCCATCCCATGTCAACCACAGCACAGCCTGTGGTCATTCGCATTCCCAGACACATGCAGGAGCAGGTAGAAAATGTGAAGCAAGTGAGAGGCAAGAACAAAGTCATCACCATCAAGGCTGGCAAACTCCTAATCAAAAGCAAGAACCCAGAACTGAATCAGTCCGCAGGCTACACACTTGGGAAATTTGAGCATTCCCATCTCTCATCCAAAGGATGGAAACACAACAGATCATTTGGTGACTACTTCAAGGTTAACAACACTCAGCGTACTCCACCCGTTGTCACTGAAATCCAGGATGAGGAGGGTGACAAACTCAAAGAGAAGAGTAAACCTATTACATGGTTTGGCCAGGCTGTGGCCAGGAGCCTGTGGGGCCCATTCAGGCTCATGGTGAAGACAGTGGGAGGTGGGAGAGGTGTGGGCAACATCAAGCTGGCCTTCACCAAGGGTCCCCCAGATGTGTTGGTGGCCACACCTGGTGCCCTCGCCAAGGCCCTGCGGAAACGCTATCtCCCCAAGCTGAGCTTCATGGTGGTGGATGAGGCAGACACAATGTTTGATCCCAGCTTCTCTGGCATGCTGGAGAGCATCCTGGCCCAGACCCGTGCGGCCTGTGACCCCTCAGAGACCCAGGGCCCCGGCTCCACCCGCAAGGCCcagctggtggtggtgggggccACGTTCCCCGGTGGGGTCGGAGAGGTTCTCAGCCAGGTGAGGGACCTGGGAGGCATGGTGACTATCAAGAGCAAGAATCTTCACTTCCTCATGCCACATGTAAAACAGACCTTCCTGAAGGTGAGGGGAGCTGACAAGCTTCTGGAGCTCCACCAGGTGCTGAAGGCAGCAGAGCAGGACAAGGCTGGGGTGTTGGTGTTCTGTAACCGGGCTTCTACAGTCAACTGGCTGGGCTACTCCCTGGAGGACATGGGGCTGAGACACGTCCGACTGCAGGGGGAGATGCCTGCCTCCCTCCGGGCTGGAATCTTCCACTCCTTCCAGAAGGGACAGGTAGACGTGCTGATCTGTACCGACATCACTTCCCGAGGACTGGACACCCAGAGGGTCTGTCTGGTGGTCAATTACGACTTCCCAGAATCCCACACGGACTACATCCACCGGGCGGGGCGGGTGGGCCGGGTAGGGAGTATGGAGGATGGGGAGGTGCTCAGCTTCGTCACCCACCCCTGGGATGTGGAGCTGGTGCAGAAGATTGAGACGGCTGCCCGGAGGAGGACAAGTCTGCCTGGGATGGAGTCCTCCATCAGGAAGCCTGAGCCCAAAGCAgccgaagaggaggaggaagaagaggggttGCTCTACTAGTGGGTCTGCCACAAATAAGGATATTACCAAAGCAGAACTAACTTGTTTGATTAATTTGTTCAGTAAAATGATTGTATCCAGGATAGCCCGAACCAGCTGTGTGAGACTGAATCCTTTGTCTCCAACACAGGCATGATCATCTTTTAATTTGACCTTTTTAGATGCCATATCATGTTTGAGACTGGAACTATGATCTGACTTCTCTTTTTAAACCAGATGGTTACCGCATGTCATTCCAAAGAGGAAATGTCTTTGGTAATGTACAAAAATCATGCCCTCTTTATAAGCAGCAGGTGTGCGGCACATGTTTGCACTTCTCACGGGTAATCACGGGGTGGCAGTATTTACTTTATTTGACCTGTCATACAGCAGTCATACAATAACCAGAGAAGGGCTATGGCCGAATATAGTCTTATTTTAATGCTCATCCACATGGGGCAAGCCCTTCTTTTATGGAATTTAACTCAGCCATACTAACTTGTTTTGGTAAAACATAGGTTAAAGAATCTAAAAAAACATTTAGAACAAGTATGGAATACCGATTTTACTTTTCCTTCCAGAAATGAAAATAATTTCCTTAAAAGAAAGAGTAACTCATGTAACCCTTCATGTATCTGGTAGGGTGCCACTGAGACAACGGTGCTAATCTCTTCTCACTAACCACAGGTAGACCCACATTAGCATATTACGTTTTGGAAAGTGGTCTTCACTCAGTTTCTGCTTTTGTGTGTAATACAGAAGCACGACATTAAAACCTCCATATGTAGAAATGTCCATTAATCTACAGTCAAGTTGGATTCAGGCCCTAGCCTTGAAGTCTATCCCATTGATGCCTGCGGTTACTTGTTTTAGAGGAAGCAAGATGTTTGAACATGATAATGTGTCGGAGTGAAAATAAATCTCTGTGAA

Function

NR:

description
probable ATP-dependent RNA helicase DDX28

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607749.2 True 2523 mRNA 0.48 5 78220534 78224155

Neighbor

gene id symbol gene type direction distance location
LOC110526621 LOC106587617 coding upstream 93108 78103895 ~ 78127426 (+)
LOC110526620 lt4r1 coding upstream 130233 78088907 ~ 78090301 (+)
LOC110525051 LOC106587608 coding upstream 131788 78087216 ~ 78088746 (+)
LOC110526617 LOC106562414 coding upstream 178387 77968167 ~ 78042147 (+)
LOC118965105 NA coding upstream 257231 77963249 ~ 77963303 (+)
LOC110526624 LOC105022628 coding downstream 2208 78226363 ~ 78358769 (+)
LOC110526630 LOC106562411 coding downstream 142578 78366733 ~ 78379992 (+)
LOC110526629 LOC106562410 coding downstream 157229 78381384 ~ 78389020 (+)
LOC110526970 LOC105022633 coding downstream 165303 78389458 ~ 78477958 (+)
LOC110526639 LOC106587637 coding downstream 278795 78502950 ~ 78511984 (+)
G548573 NA non-coding upstream 32367 78128193 ~ 78188167 (+)
G548570 NA non-coding upstream 102684 78117091 ~ 78117850 (+)
G548498 NA non-coding upstream 284983 77934078 ~ 77935551 (+)
LOC110526615 pcat2 non-coding upstream 354666 77848962 ~ 77866316 (+)
G548642 NA non-coding downstream 23581 78247736 ~ 78248253 (+)
G548629 NA non-coding downstream 127853 78352008 ~ 78409500 (+)
G548788 NA non-coding downstream 317138 78541293 ~ 78541498 (+)
G549207 NA non-coding downstream 323149 78547304 ~ 78547608 (+)
G549214 NA non-coding downstream 329343 78553498 ~ 78553802 (+)
LOC110526614 mmp2 other upstream 403473 77814375 ~ 77847797 (+)
G548000 NA other upstream 697111 77512609 ~ 77523423 (+)
G547884 NA other upstream 941180 77277992 ~ 77279354 (+)
LOC110526968 fto other upstream 1184221 76827001 ~ 77038395 (+)
G548703 NA other downstream 196705 78420860 ~ 78496470 (+)
G549342 NA other downstream 545101 78769256 ~ 78769907 (+)
G549345 NA other downstream 547957 78772112 ~ 78772557 (+)
LOC110526645 unc13c other downstream 927209 79089592 ~ 79354959 (+)
G550054 NA other downstream 1255326 79479481 ~ 79480078 (+)

Expression


Co-expression Network