LOC110526970 (LOC105022633)


Basic Information

Item Value
gene id LOC110526970
gene name LOC105022633
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 78389458 ~ 78477958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981010.1
TTCCGAAACGATAAAAACGTAAAGCCTATGGACATGGAGAAAGGCAGCTCGGGCATAAAGCTATAGGCCTACAAATCAAGTGAGGTGACTGTACCTCAGTTTTCATTCGGTTATCAGGATTTGGAACTAGAATCCACAGAGAGCAAACATGTGAGTCGTGACCGAAGCAAGCAATGACAATGTTATAGCTTCGATACTGACACTATTCGGCATGAAAATAAACGGCAATGTTTTTGACGTTGTTTCGCAGGGATTATGCTACTATTCTCGGTTTTGAAAGGGAGAGAGCAGCGCGGCACTAGAGAAGCCGGAGGTTAATCACGTTTTCAGCACCGAGACAGCTCCTTGTGGAAGAGGTCTATATTCGGCAGCAAGGAGTCCCTTCCGCGATCGCGGGGGAAGCCCTCAACCCTCACTAGCAATTTTGGAGCGGTGTAGCCAACAACACACACAACGCTCTGACCTTTCTTTCTCCACTCTCCAATTATGCTGGTTATTTGGTGGTCAATCAGGGACACTTAATATAATCTTGCTGAACGACGATGGTGCTTGCATTTCGGCTCCAGTCTTTTCGTTTTACAAAGGATTCTAAGCAGCAGCGGCAGGGGTGCTTGTCCAATGTAAAAGTGCTAAGGAAGGCAGCAGCCTACACATCGCCACGAGCTTGGAGCACGAGCCTCACTCGTGCTGATCATCACAGAGGGAGACATTATCACGAGCACGCGGCCAACGGGAGGCTCGATTAGACTGTCAACAATGTAAATCAAGACAGGTTCAACATGAGTCCAGCAGAGTATATCTGGTGTGGTGATCTCAGAAGCTAAGAGAGATAGCCTGACTGAGAACTGAGTGAAGATCAtagcctcctcctcttcctctctccatcaccatccACCAACATGGCTAACCCTCATGACGTGGTGGAGCAGCAGGCTGGAGGCCTATCAGACCTGGAGATCATCTCCCAGCCAGACCCAGTGGAGGAGCATGGTGTGCAGGAGATGGACCCTTCCTGCATGGCTCCTGTCCAGCTGGTCAGCTTCGGCTACAGGGACCTTCCTCTGGCCCACCTGGACCTCTCCCTGGCCGGATCACAGCTCCTCTCTAACCTGGATGAGGACGACAACAGGGAAGGgtCTAACTGGTTGAAGCCGTGCTGTGGGCGGAGGGTAGCCCTGTGGCAGGTGTGTCTGCTCAGTGCAGGCTTCAACTGTTTCCTGGTGGCCCTGGTCATCCTGGTGGTGGTCTTCTTGACCCTGGAACTCCTCATAGACACCAAGCATCTACAATTTGCCAATGCTATTCAATTTGCCAGCGTCATCCATTGGATCAGCCTTGCCATCCTTTCACTCTTCTTCACTGagACTGTCTTCAGGATTGTAGTCCTTGGGATTTGGGACTACATTGAGAACAAAGTAGAGGTGTTTGACGGGGCAGTCATCGTATTGTCCCTGGCCCCTATGGTAGCCTCCACGGTAGCCAACGGCCCCAGCAGTCCCTGGGACGCCATCAGCCTCATCATCACCCTGCGCATCTGGAGGGTCAAGAGAATCATCGACGCCTATGTGTTGCAGGTGAAGGTGGAGATGGAGCTGGAGATCCTGCAGTGTGAGAAGATCAAGGCTGTCAGGGAGGAGCAGCTGGAACGACTCACACAGATCTGCCAGGAGCAGGCAtTTGAGATCAGACAGCTCCGGGCCCACCTGGCCCAGCAGGACTTGGACCTGGCTGCAGAGCAGGAGGCTGCTATGCAGATCCACCACGTGTGGGGCAAACAGAGGAGCAGCTACCAGGTGGTGGAGAGCCAGGGCCCTGGGGAGTCTGACGATGAGGGACATGGAGTCCTCAGGGAGACCCCAGCAGATCCTGTTGTCCATCATGACGACATGAACAACTATATCAGCCAGTACTATAGTGAACAAAGTAGTGACATGGGGGGTCTTCGTGTCATCACCACGGCAGCCATCGATGTCCACCTCCCTAAGACCCATTACCCCGCCCACAACAATCCTCTGCTGGGCGTGGAGCAAATGAGCAGCGCTGTGAGTGACACTTCCACCAGCGTATCACGGTCCAGCAGCAGTCTGACTGCCCGCCCCCATAGCCTGAGCAGCCACACCCTGCGCTCGTCTACTACGGACTGCAGCAGCAACGCCACGGCCAGGGACTACCACACTCAGGCTAGGAACTACAATTCCCATACCAAGGCCCGGGGGCCTTATCTGGactacaagtcccagaagcaGACCCAGGAAAGGGACTTTAACACCGAGCACTCCAACACCCAGGGCCAGCGCTGCTTCCTCCTGCCCTACTGCAGCCCTCTGGGCCTCGGTCTGACCTCAGCCCAGCCTCCCCTTCCACAGGACCCCAGCGTGGTAGTCCAGGAGCTGCTCTCGTCCCTATCTGAAGACTCCTGTCTGGCCCAGAAAGGCCTGGTGGACCCAGTTAACCTGAAGCTTCCCAGTCCTGCCGGCTCAGCCAAGGCCAGCCCAGAGCTGGAGCACAGAATCAACATCTACAACTGGAAGAATCAGGAGGAGAACCAGTACCAGAGCCGGGGCCAGAGACAGGGCCGAGCCGCAGCCACTGTGCTCCTACAGACTAAGCCTCTCATCCACCTGCAGGGCGGAACTCCTGAGTCCTCTTTGGAGGAGAAGTATAGGCTACTGGGCCCTGCTGATGGTCCACTGGGCCGTCTGCCTGATACATAGGGTTGATTCACACTACTGAGCTAAGCCAAGCCGAACTGAGCTGCATTGTGCTGGCCTGGTTATGCATCCACCATAGTTGTTTGAACCGTGCTGGAAAGGACATGTGAAAAGAATATGTCAGAGCCAGTACTGGTTGGCTCGGGTCGGAACAACAGTGTGAAAAGGGCAATAGTTCATCCCAGAGGACAGAGCATACAGCTCAAGACAGAACTGACTGACCTGGCTTCTCCAAATCCTCATGCTTCAAACAAAGTCAGAGCCTGGTCCAAGATCAAACCTGGTGTTACAAAGACCATCTGttagcaagacagcacaaacagatctggggctAGGCTACCGCTCTCATGTTAGTCTTCCCTTCTCTGTGGGGCTccggacagagacagacagacagatctgggGCTAGGCTACCGCTCTCATGTTAGTCTTCCCTTCTCTGTGGGGCTccggacagagacagacagacagacacaacccTCCTCGACCTCAATCTTGGGGTGACTTAGAATAATTCACATTTGCACAACAATGACCCAATGAGGACAGAGGGGACATGTGTGGGCCTAGAAAGAACCATCATCAGGAAATCCCACTTTAAATGGGGCCCCAAATGTGAAACAAAACAGTTTGAAATAAAACCAGCAATGGGCCATATTCAAGCCTTTACAGAACAAGCCTATTCAAGTGTTCCTATGTTAACTACAAGACAGATTTGACATGGGATTTCTCTAAGTtgggtgggagtgggagtgggagtgggtggTGTTTTTGCTTTTTATTTGAATTAGCTACTGTAAGTGTGCAGTTCTCTCTGCTCTAACAACCAAGCCACAGGGTGCTTTCTCTGGACAAACTGTCTGTGCCAAATAAACAGACACTTTCTTACTATACTTTTGTCTTTCTATAACAGAGATAAAGAGGTTTGTATTGAAGTAGAGGAACATCAACCATATCAAGCCTGGCATTTTCTAGCCAGACGGAAATGACGGAGGAATTAAAAGTATGAGGATAGGTAGTGAATGGCCCTAAAGGATCCCAAGAGGTCCAGCATAAGAAAAGCATGTGAATCTGATTATGAGCTGTGATGGAGGATTGGTGTTTTAGATTGGAGTGCTGGTAGCATGAACCTTTCTTTAAAAGATCTGCAGCCTGAACATGGCTAGCCAATCCTGTGCACTTTAATCTTTACAGATGTTTTGTAAACTTAATATGTGGGGAACTCATTGCCAAAATGCAGGTGGTGCCATTCAAATAATAAATAAACCTTTGTAACATTAACAATACTGTGGTCCCATTTTATTGCTTTCAGTTGTACATGAGCCATGCCATTTTAAATTATAATATTTTGTACATTGGTAGCAGAGATTTTCATATTCAGTCTAATATTCATTAGTTGTTACCAAGGGATATGATGTATATATGGATGCCCTTTACAAAGCAATACATGAAATGACACAGTAGAATACATACCAAACCAAAAAGTACTACGATGTATTTGAGATAGAATCCTCTACATTAATATGAATGAGTTTGTTTTACATGTGGGCTCTTTATCAGATATGACTGAGCCTTCCCATTGGCTCCAGACTCTACAACATCACCCTACAACACTTCTGCATTAGCAACTGTCAACTTATTTGCATATCGCTCTGAAAGGAAATAAATTATTCATATCTATTACCATTGGAGAGACCTGTCGCAACAAAAATGTAATTGGTTAACGAGGTTTGTCATTATAAATGTCTGGTAATGAGGATTAAACCCCCTAATTAACTTTCGATCAAATAATTAATTTAGGACATAAACTACCCATTTTGTTTCTTGTCAAGTGTTTACAAGTAAATTGTATGTTTAATTGTTAATTAATAACAAGGCCTAAGTGTTTCAGAAGTATTCATTAAGACATGGGGACAGTAAAGTGGGGGTTGGGTCTAATGTTATTTGAG

Function

NR:

description
PREDICTED: transmembrane protein 266 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981010.1 True 4660 mRNA 0.49 11 78389458 78477958

Neighbor

gene id symbol gene type direction distance location
LOC110526629 LOC106562410 coding upstream 438 78381384 ~ 78389020 (+)
LOC110526630 LOC106562411 coding upstream 9466 78366733 ~ 78379992 (+)
LOC110526624 LOC105022628 coding upstream 30689 78226363 ~ 78358769 (+)
LOC110526623 LOC106587623 coding upstream 165303 78220534 ~ 78224155 (+)
LOC110526621 LOC106587617 coding upstream 262032 78103895 ~ 78127426 (+)
LOC110526639 LOC106587637 coding downstream 24992 78502950 ~ 78511984 (+)
LOC110526640 LOC106562467 coding downstream 179152 78657110 ~ 78676158 (+)
LOC110506124 LOC101474724 coding downstream 285649 78763607 ~ 78909743 (+)
LOC110526645 unc13c coding downstream 611634 79089592 ~ 79354959 (+)
LOC110506775 LOC106562487 coding downstream 1046851 79524809 ~ 79531505 (+)
G548642 NA non-coding upstream 141205 78247736 ~ 78248253 (+)
G548573 NA non-coding upstream 201291 78128193 ~ 78188167 (+)
G548570 NA non-coding upstream 271608 78117091 ~ 78117850 (+)
G548498 NA non-coding upstream 453907 77934078 ~ 77935551 (+)
G548788 NA non-coding downstream 63335 78541293 ~ 78541498 (+)
G549207 NA non-coding downstream 69346 78547304 ~ 78547608 (+)
G549214 NA non-coding downstream 75540 78553498 ~ 78553802 (+)
G549224 NA non-coding downstream 86169 78564127 ~ 78564333 (+)
G549227 NA non-coding downstream 89392 78567350 ~ 78567580 (+)
LOC110526615 pcat2 other upstream 523590 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 572397 77814375 ~ 77847797 (+)
G548000 NA other upstream 866035 77512609 ~ 77523423 (+)
G547884 NA other upstream 1110104 77277992 ~ 77279354 (+)
LOC110526968 fto other upstream 1353145 76827001 ~ 77038395 (+)
G549342 NA other downstream 291298 78769256 ~ 78769907 (+)
G549345 NA other downstream 294154 78772112 ~ 78772557 (+)
G550054 NA other downstream 1001523 79479481 ~ 79480078 (+)
LOC118936661 LOC106592882 other downstream 1093921 79571838 ~ 79577990 (+)

Expression


Co-expression Network