LOC110526645 (unc13c)


Basic Information

Item Value
gene id LOC110526645
gene name unc13c
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79089592 ~ 79354959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981784.1
CTGTCAGCCAAGTGCAgtgagcagggagagagacactgctgctccctcatctcctctctggtcCATTTGAGGGGCTCTAACAGCCCAGCAGGAGATACCAAATCTGGGCAGGAGCCTTACCACCTCCCCCTTTCTGTCTGCTGGATCCCCTGGGCCAGGCACTGTGTGCTTAGGGCGTGTGTGTTTgcacgtgtgtgtgagagaggagcCAAGTCggtcacacagacagcagaaaaACAAGCCGAGGCAGCatccatctaccatctaccacatcagaaggagaggatagagggaggaaggaagaatAGACTGATTGCTGGTGCTGCAGACGGAGGcatggaggagaggtgtgtgtcaGCCATGTGTGTGTGGAGCTGAGGCTTCAGTCACGGGTTCTGGCGGACGGACAGTCGGAGGGAAGGAGGACTGGAATGTGGATGTTGCCTGCCTGTCAGAGGGAAACGATGCTGTGAGCTGGGGCTTAGCAGGcagatctctctctgtgtctctttctctcctccctgcacacAGAGGAAAGAAACATTAGCTGCTAGCTCCATCTCTCCGCTGCTCTGCTCAGCCgacgctctatctctctctccctctcctctcgcaTCCCTTCATCTCTCTGCTCCAACCACAGTCTCCCTGGAAATGATCTCACACTGGATGTTGCAGTCAGACACTGCTCTGCTCGCTGAATAGTATCGACTTGCACTAGGAATTTACTAATCAGAGCAATGTGTCTGGTCCTTTGGAGAGCCAGTGGATTTCACAGTGATTCCCATCCACCACTCGGATATACAGAGTTGGAGTTTTGACACAAGCTCATCTACGCAGGCCTGTCAGAGTTGTGTCTGCCTGGGGGTTAACGCTCCCTCCAccgtccctcctcctcctccccctcctccaccaacACCACCGCTGGCTCCTCCACCGCTGGCTCCTCAGTCCGAGCAGAGCTGCTCCACTGCATCTTTAATAGAGGTCTCTCAAAGCATTGCCTTCCATGGTTTCTGCCCTGCTCCAGACCCTATCATCTTACATCGTGAAGATTTGCAAAGGAATGTTTACAAAGAAATTGGCGAATCCCACAAAGAAGAAAGAGAGTAGCGACAATAAAGAGCCTAAATTGACCACCACTGATTTGCGTGACCAAGGTAACCTGACGCCGACACTCTCCTCCACTGTGAAAACCACAGTGAAAAATATCAGCAAATGCTCTTCGGCGCGTAACATCTCTCTTGAATTAGACGACGGAAAAAATGACTGCTCATCTCTCTCACCGACTTTCAGTTACCGTGTAGCGATAGCCAACGGACTCCCGAAAAACACTCTTCTGCTGAACAATAATGAGAGTATCTTCCAGGAGATCCTCTCCATCAATAGCGAATACTCTGACTCCCTGAGCGAGGCCAAACCTGTGCGTAGATTCGATGAGCAGAAATCTCACACCATGCCAGTGAGACGGAACAGGAAGAGCCTCATTAGTCTGGCGCCCTCCGATGGCAGCTCAGAGGGTGAGAGGGTGGAGCGCTCAAGTCTGCACACTCTCCGACTTGGCGCGCTACGCAAGCTGAGGAAATGGAAGAAGAGTCAGGAGTGCGTGTCTTCGGACTCCGAGGTGAGCAACTGGAGGAAGACCCTGGGTATCCGGAGCAAGTCCCTGGACCGGGCTGGGAGGCAGCAGAAGTCAACCTCTGCCTTAGAAGCCGGCTCCAGCTCTACAGGCTGCATCAACCAAACCCAGGATGTGATGGAGATGATCTTTAAGGAGCTGCAGGGCATCAGCCAGATCGAGACAGAGCTTTCAGAGCTCAGGGGACATGTCAATGCCCTGAAGAACTCCATCGACGAGATCTCCTCCAGCGTGGAGGTGGTGCAGACCGAGATCGAACAACTGCGTACTGGCTTTGTCCAGTCCCGGAGAGAGACGCGAGACATCCACGACTACATcaagcaggtcagccaccaggccAACAAGGCCAGCCTGAGGTTTATAAACGTCCCTGAGGAGAAGCTGGAGAAAACTGAGAGTCTCATCTATCACATTCTAAAGGACAAAATGGGATTTGCTGAAGCACATAAAACACTTAAAATAGAGCTAGCCCATCGGTTAGGGCAACAAAGAGAATGTTCCAATGCAAAACCTAGGCCTATTATTGTAATATTCTCAACCCCCTCAGATAGAGATTTAGTTTTGAAAAAATGCTACAAACTGAAGGGGACTGGTATATCTGTATCCACTGATAGCTTAACGACTCATGATGTGAAGGAAAAGAAAGATaaaggagaaatgtcctcttctCAAACCTACGAGAGCATGGACATTAAGGTCTCAGCCAAGGACAAAGCTGAGAGTGATGACTGGGACTCTATGGACAGTGACAAGGAGCTAGACGAACTAAACAGGAACAAATATGCAATGGTGGTGTCTAAGCCCGTTCACAAACATAAAGCAGATAAAAAGAGGCACGGTCACCATGAGCACGGTAGCCGGTCTGCGGATGAGGCAGGCTACTCTGCCTCAGTTCATTACGCTGATGACTCCTATGATGAGTCTGACAAAGCCTCCAAGCCCTACTATGGTGACCTCACCCCCGGCTGGCTTTCTCAAAGCGACTACTCCACCCCCAAGCTCAGCCGCTCCGAGTCTGACTGCTCCAAGCTCTGCCAGTCCTACTCTGAAGACTTCTCAGAGAGCCAGTACTTCAGCCGGCCCAATGGCAGCTCTCTTCTATCCTCCTCAGACCAGGAGCTGTGGCAGAGGAAGCAGGAGGACATGGCGTCATCATGGTATGCCAGCCAGACCCTCAGCCAGGAGAACCCTCCGTACGCTGAGCCCAACGAGGCCGAGACCACCGAGACCATCGACAGTGGGGTGAGCAATGGGTTGATCTGCATGTCTGGGGATAGGAGCCATTACAGCGGCTCACAGCTGTCTCTGCAGGGAGACCTCTCCCCATGGAAGGACTGGCCTCACCTGGAGCAGGGAGCAGACTCTGGGCTGGACGCTTCCACAGAGCAGAACCTGGTGTCTGAGGTCAGCAGCCCCTTTGACCCAGCTGCCATCCCTGGCTTCCCTGAGAACATCACCAAGTGTCAGGAGGTGGACCTGGCatttgaaggggaggagactttCATGTTGTATATGGTGGAAAGCACCCTCTTGGACACTGCCCCACTGGAGATCACCCAACTAGAGAGTGCCCGGCTGGGTAGTGCTCCCCCCACTACTCTTTATACAGCCCCTATCGTAGCGAAAGAACCTGTTGTAACACCACCTGTCCATAAGCCTAAAGCTAAAGAGACTGCTAAAACACTTCCTAAAGAAACTTCTAAAGCAGCTCCTAAAGCTAAAACACCTACTAAAGAGTTAGCTAAAACTGTTCCTAAAGAGATTGCTAAGACTATTCCTAAAGAGTTAGCTAAAACTGTTCCTAAAGAGATTGCTAAGACTATTCCTAAAGAGGTTGCTAAAACTATTCCTAAAGAGGTTGCTAAAATTATTCCTAAAGAGGTTGCCAAAACACCTAAAGAGGTTGTTAAACCTATTCCTAAAGAGGTTGCCAAAATACCTAAAGAGGTTGCTAAAACTATTCCTAAAGAGGTTGCTAAAACTATTCCTAAAGAGGTTTCTAACACTATTTATAAAGTGACTTCTAAACCGGCAAAAGAGGTTGCTAAATCAATTGCTGAAGAAGCTGCTAAAACTATTAAACTAAGAGAAACAGCCAAAATGATTCCTAAAGAGAATGTTAAAACACCTCCTAAAGAAATTGTTAAAGCTATTCATGCAGAGGCTCCTAAAACACCTCTGAAAGACACTCCCAAAACAAGCCCAAAAGAAACTCCCAAAACAAGTCCGAAAGACACTCCCAAAACAAGTCCAAAAGAGGCTGTGAAAATACTTCCCAAAGACACTCCTAAAACAAGTCCAAAAGAGGCTGTGAAAACACCTCCCAAAGACACTTCTAAAACTCGTACAAAAGAGACACCTAAAATGGTTCCTAAAGGGGCATCTAACACGCTTCCTAAAATGGCAGCTAAAGAAGCCCCTGAACTATCCACCCAAACATTCCCTGAGCTTGATGTCAAACACAGCTTCCAACCGAGCCAGACCAAGTCATCCACCATGTACCGTAGCCAGAGCGAGATCCGGTCCGAGAAAGTTGTAGAGGAGGTGCCCAAGTCCTGGAGCAGCCGCCTCAGCATCGACCTCACCGACAAAGCTCCATCCTTCAGCTTTGGGTTCGGCTCCACCCTGAAGAAGGCAAAATCAGCCCTGGAGGTGGTGTGGAAGTCAGGCCCTCCACCTAGTGCCGCTCCCCCAGAGCCACCCCCAGACTCAGGCTCCTTCATGGGCCGCTTCTGCACACTGTCCACCTCCACGGCCAACGACTCCAGCACCACCATCGACTCAGACGTCTACACAGATTCCTTTGTCTACAAGGCTGAAGATGAAGATGAGGCTACCACTGGTGACCAGCTGGAGGACAACGAGACCGCCTATGTCGGGGTGATGGAGCAGGTCCTGGCCAACCTGGAGAACCGGTCCAATGCCAACGacacagaagagacagaggagtttGAGGAGCCCATACTGGATTATGATCCTGATGCCTCTCAGGATTATGTCTCTGAAGACTATGAGGCTACCACCCAGGATTACGAGGACTCTGAGGAAGTTGAGGCCACCCAGGAGGCTGCAGTCGTTCTGGAGTATGACTGTAGTCTGGACGAGCATTACGACGAGGAGTACAGTGAGGATTACGTTGATGATGCCATGACGGGGGACACGGCAGAGGACACAGCAGAGTATGAGGCCATGGTGGAGTATGTCGAGGTGGAGGAGCCTgacgaggaggaagaagaggaggaggaggaggaagaggagttaaTGGAGGACAtggaagagggggatgagatgGAGGAGGCCTCCGAAGCGTCTGCGTCGGAGAGGACGGAAAACCTAGAGGATGAGAACAAAAACATTCCGGAGAAGGAGGAGATGCCTGCAGAGGCTCCGCCCAAAAAGCGAATCCGTCCGACGTTTAAGGAGGCTGCGCTGAGGGCCTACAGGAAGCAGATGGATGAGCTGCAGCAGCAGATCCTGGCTGGAGAAAAACCTCCACCACACAACAAGCCTCTCAATGTGCTGGATCCCAAAGTACTGGGCCTACAGGCTGTCGGAGGAGCTGGCTGCATTCTTTATGgcattgacagcatgccagatTTACGCCGCAAGAGGACCTTACCTATTGTCCGAGACCTGGCTATGacTCTCGCTGCTCGAAAGGCAGGCATCTCGTTCGCCCTGGTGACTAGATCGACCCTGAACAACGAGGACCTGaaacTGCACGTGTTTAGGAAGACGTTGCAGGCGTTGATCTATCCCATCTCGTCTACGACGCCTCATAACTTTGAGGTGTGGACGGCCACCGCCCCAACCTACTGCCACGAGTGTGAGGGCCTGCTGTGGGGCATCGCCAGGCAGGGTATGCGCTGctctgagtgtggtgtcaaatGCCACGAGAAGTGTCAGGATCTACTCAACGCCGACTGCCTGCAGAccTCTGCCTTCCCTGTCTCCCCTGCCTTCCCCTGTCTTTCTCGCTTGTCTCTCCCATcatcctctgtcttcctctgtcttcccctaccttcctctgtcttcctctgcctccctctattcccccatctctccctgcctccccctcactcctctccaGTGATGTGTGCCCAGGGTCTGCAGGCCAAGGATAAGACAGGTTCCAGTGACCCCTATGTGACTGTCCAGGTAGGGAAGACCAAACGGCGTACCAAGACCATCTTTGGGAACCTCAACCCTGTCTGGGATGAGAAGTTCTTCTTTGAGTGTCACAACGCTACAGACCGGATCAAGGTGCGTGTGTGGGATGAGGATGATGACATCAAGTCTCGCATGAAACAACACTTCAAACGAGAGTCGGACGACTTCCTGGGTCAGACCATCATCGAGGTCCGCATGCTCAGCGGGGAGATGGATGTGTGGTACAACCTGGATAAGAGAACTGATAAGTCGATGGTGTCGGGAGCCATCAGATTGAAGCTCAACgtggagatgaagggagaggagaaagtagcTCCGCCCCATGGCCAGTACACCTGTTTACATGAGAACCTGTTCCACCACCTGACGGAGGTAAAGAACAGTGGAGCGGTGAAGATACcagaggtgaaaggagaggaggcGTGGAAGGTCTACTATGACGACGTGTCCCAGGAGATAGTGGACGAGTTCGCCATGAGATACGGAGTAGAGTCCATCTACCAGGCCATGACgcatttctcctgtctgtcctctaaGTACATGTGTCCGGGGGTCCCAGCGGTGATGAGTAACCTGCTAGCCAACATCAACGCCTACTttgcccacaccaccaccatctcaACCAACATCTCTGCCTCCGACCGCTTCGCTGCATCCAACTTTGGGAGAGAAAAATTTGTCAAACTTCTAGATCAGCTGCACAACTCTCTGAGGATTGATCTGTCCAAGTATCGGGATAATTTCCCAGCTGGTAACCCAGAGCGTCTCCAGGACCTGAAGTCTACTGTGGACCTTCTCACCAGCATCACCTTCTTCAGGATGAAGGTACAGGAGCTACAGAGTCCTCCCAGAGCCAGTATGGTGGTGAAGGACTGTGTCAGAGCCTGTCTGGACTCAACATACAAATACATCTTTGACAACTGTCATGAACTCTACAACCAGCTACTAGACCAGGCCCGTAAGCAGAATCTTCCCCGGGAGGAGCAGGGTCCGTCTATAAAGAACCTGGACTTCTGGCCCAAGCTCATCACTCTCATGGTGTCTGTGATCGACGAGGACCGCACCGCCTACACCCCTGTCATCAACCAATTTCCCCAAGAACTGAATATGGGGAAGGTCAGCGCTGAGTTCATATGGAACCTGTTTGCCCTGGACATGAAATACGCCATGGAAGAGCACGATAAGCACCGTCTATGCAAGAGCACAGAGTACATGAACCTTCACTTTAAAGTCAAGTGGTTCCACAACGAGTACGTCCGCGAACTGGCTGCCTTCAAAGACACACCCCCTGAGTATTCTCTgtGGTTTGAGCCGTTTGTCATTCAGTGGCTGTCTGAGAATGAGGATGTTGCCATGGACTTCCTACACGGAGCTCTGGGGAGCGACAAGAAGCTTGGCttCCAGCCAACGTCGGAACATGTCCTGTTCTCCTGTTCGGTGGTGGATGTGTTCACTCAGCTCAACCAGAGTTTTGAGATCATTAAGAAGCTGGAGTGCCCCAACCCACAGGCCCTGGCTCACTTCATGTGCCGCTTTGCTAAGACCATCAACAAAGTTCTGTTGCAGTATGCTGCAATCATAACCAAGGATTTTGGCTTGTATCTGAACCAGGAGAAAGTGCCCTGCATCCTCATCAACAACATCCAGCAGCTCAGAGTTCAGCTGGAGAAGATGTTTGAGTCCATGGGAGGCAAACAGCTGGATGCTGAGGCCAGTGAACTACTGAAGGAACTGCAGAACAAACTCAACACCGTGCTGGATGAGCTCAGTGCAGTCTTCGGCTCcagTTTCAAACCGGTGATTGAGGACTGTGTAAAGCAGATGAACCAGGAATTAGTCCAGATGAAGGGGAGTGCTGCAGGGAAGAGCAACGCTGCCATGGATGCTGAGACTGTCCTCAGACCACTCATGGACCTCCTGGATAAAAAtTTGATTTTATTTGCAAAGATCTGTGAGAAGACGGTGTTGAAACGAGTCCTGAAGGAACTGTGGAAGATCGTCATCATCACTATTGAGAGAATGATAGTCTTACCACCTCTCAATGACCAGAATCAAGGAGCCCAGATGATTTTCAGTGCTGCCAAGGACCTGGGACAGCTATCCAAACTCAAGGACCATGTGATCAGAGAGGAAGCCCGTAGCCTGACACCAAGACAGTGTGCAGCCATGGACCTTGTCCTTCCCACCATCAAGCAATATTTCCACGCCGGAGGAAACGGTCTGAAGAAGACGTTCCTTGagaagagccctgacctcaagtcCCTCAAATATGCTTTGAGCCTTTACACACAGCCTACCGATGCCTTGATCAAGAAGTATATATGCACCCAAACCTCTCAAGGTCAGTCTACCGACAGCTCCGTGGGGGAGGTGTCCATGCAAGTGGATCTCATCTCTCACCCTGGCACCGGAGAGCACAAAGTCAACGTGaaggTGGTGGGGGTCAACAACCTAAGCTGGCAGACCAATGCCATGTTCCGACCGTTCGTGGAGGTGAATGCGGTTGGGCCGCACCTCGCCGACAAGAAACGCAAGTTCACCACCAAGACCAAGAACAACAATTGGTCACCAAAGTACAACGAAACATTCCAATAtgttcTGAGCAATGAGTATGGTCCAGAGTGCTACGAGCTGCACGTCTCAGTGAAGGACTACTGCTTCGCCAGAGAGGACCGTATCATCGGCATGGCGGTCCTCCAGCTCAGAGACCTGGCCGACCAGGGGAGCTGCTGTGCCTGCTACCCCCTGGTGAAGAGCATCTCCATGGACGACACCGGACTCACCATCATGAGGATACTCTCTCAAAGGACCAACGACGAAGTGGCCAAAGAGTTTTGTCGTCTCAAGACCGACGTACGCTCTTCAGAGGAGGTGGCCTCCTAGTATGGAGatgtgagggaggaagggatggaatgAATGGATGATTGcatggaagggaagagaggggggaagagcgggagggaggcaaggggaaggaaggaaggagggaaggaagga
>TU622349
TTATAGagtctggtcaaagtagtgcactttatggggaatagggtgtcatttgagataaTGCCCATGTCTGCCTGCCAGACAGACAGCTTCTAATTGCATCTCTTGCTTTTTCTTTTCATTGCGTCTGTGGAAACCATCAGGCTATGacTCTCGCTGCTCGAAAGGCAGGCATCTCGTTCGCCCTGGTGACTAGATCGACCCTGAACAACGAGGACCTGaaacTGCACGTGTTTAGGAAGACGTTGCAGGCGTTGATCTATCCCATCTCGTCTACGACGCCTCATAACTTTGAGGTGTGGACGGCCACCGCCCCAACCTACTGCCACGAGTGTGAGGGCCTGCTGTGGGGCATCGCCAGGCAGGGTATGCGCTGctctgagtgtggtgtcaaatGCCACGAGAAGTGTCAGGATCTACTCAACGCCGAC
>TU622350
gacTCTCGCTGCTCGAAAGGCAGGCATCTCGTTCGCCCTGGTGACTAGATCGACCCTGAACAACGAGGACCTGaaacTGCACGTGTTTAGGAAGACGTTGCAGGCGTTGATCTATCCCATCTCGTCTACGACGCCTCATAACTTTGAGGTGTGGACGGCCACCGCCCCAACCTACTGCCACGAGTGTGAGGGCCTGCTGTGGGGCATCGCCAGGCAGGGTATGCGCTGctctgagtgtggtgtcaaatGCCACGAGAAGTGTCAGGATCTACTCAACGCCGAC

Function

symbol description
unc13c Orthologous to human UNC13C (unc-13 homolog C).

NR:

description
PREDICTED: protein unc-13 homolog C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981784.1 False 8806 mRNA 0.52 32 79089592 79354959
TU622349 False 428 TUCP 0.53 3 79151364 79163031
TU622350 True 283 lncRNA 0.58 2 79152916 79163031

Neighbor

gene id symbol gene type direction distance location
LOC110506124 LOC101474724 coding upstream 180255 78763607 ~ 78909743 (+)
LOC110526640 LOC106562467 coding upstream 413434 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 577608 78502950 ~ 78511984 (+)
LOC110526970 LOC105022633 coding upstream 611634 78389458 ~ 78477958 (+)
LOC110526629 LOC106562410 coding upstream 700572 78381384 ~ 78389020 (+)
LOC110506775 LOC106562487 coding downstream 169850 79524809 ~ 79531505 (+)
LOC110506774 LOC106587663 coding downstream 188120 79543079 ~ 79570938 (+)
LOC118936661 LOC106592882 coding downstream 216879 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 223563 79578522 ~ 79671531 (+)
LOC110526647 LOC106562494 coding downstream 317070 79672029 ~ 79699222 (+)
G549683 NA non-coding upstream 7580 79081666 ~ 79082012 (+)
G549682 NA non-coding upstream 9113 79080170 ~ 79080479 (+)
G549666 NA non-coding upstream 50777 79037295 ~ 79038815 (+)
G549663 NA non-coding upstream 57871 79030759 ~ 79031721 (+)
G549656 NA non-coding upstream 64036 79025297 ~ 79025556 (+)
G549779 NA non-coding downstream 90 79355049 ~ 79356445 (+)
G549974 NA non-coding downstream 20021 79374980 ~ 79375277 (+)
G549983 NA non-coding downstream 36431 79391390 ~ 79401647 (+)
G549992 NA non-coding downstream 57665 79412624 ~ 79412942 (+)
G549997 NA non-coding downstream 59323 79414282 ~ 79414492 (+)
G549345 NA other upstream 317035 78772112 ~ 78772557 (+)
G549342 NA other upstream 319685 78769256 ~ 78769907 (+)
G548703 NA other upstream 593122 78420860 ~ 78496470 (+)
LOC110526615 pcat2 other upstream 1223724 77848962 ~ 77866316 (+)
LOC110526614 mmp2 other upstream 1272531 77814375 ~ 77847797 (+)
G550054 NA other downstream 124522 79479481 ~ 79480078 (+)
G550265 NA other downstream 713789 80068748 ~ 80069285 (+)
G550305 NA other downstream 845211 80200170 ~ 80200529 (+)
myef2 myef2 other downstream 1060488 80415414 ~ 80430972 (+)
G549778 NA non-coding downstream 4037 79167068 ~ 79168610 (+)
G549794 NA non-coding downstream 29843 79192874 ~ 79193622 (+)
G549817 NA non-coding downstream 94842 79257873 ~ 79317374 (+)
G549783 NA non-coding downstream 115426 79278457 ~ 79282978 (+)
G549837 NA non-coding downstream 159900 79322931 ~ 79324958 (+)

Expression


Co-expression Network