LOC110506774 (LOC106587663)


Basic Information

Item Value
gene id LOC110506774
gene name LOC106587663
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79543079 ~ 79570938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981020.1
CAACCATGTTTAGTGCATGATATTTGTTGTCATCTTGACACATTGTCAAACTGTAACCAAAAAGTTTCTAGATCACGGTTGCTATCGCAGCAGGTTCACAGGAAAGACCGTACAGGAAAGACTGGTACAGGAAAGTGGTCTGGCTGTTGTTGGGACACGTGACTGAGAAAAGACTGCGCTGATCTGTTTTGACCCGGGGACATtgttagagagaggggtagagagcaCACCAACGAGTTTATTGCTAAGAAAAAGCACACAATATAATTTTGTTGCGAACGGTATGCGCCTGTACTGTGTAATTGAGTTGGACGAAGTTCGCTAGTCAGAGAACCGTTGTTTTGGAAGAAGGAAAAAAGCTCGCTAGCCACTGCGACAAGTTGGAAAATAAATGGTCATCTTGTTTTCTGACAAACTTTTGATTTGAGAGAAAGCTAGTCAACAATAACTAGGTAACTGACACGGGTCGTGGCTACTTTACCTCACTATGTTTCAAGACGACAAGTGGAACTGATGCTTCTGGACAACACGGCGTTTAGCTAACGTTGGCTGTTTTTCAGAATGATCGGTTGAACGAGGTCTGTCCTTTCCCGGAGCCCATTGTTATCGGAGGTGATCACTCTACCTGCGGGTGGGGTGTTTTGTTTGAGACGGTCGGCATCAGATCAGATGCCTGTGTGTTGTTTGTTTGGTCAGCTAGCTAAAGCCACGGTAGCTAAGCCAAATAGGTGAGGTTACAGTAGCACAGCAAGCTGAGAGAGATGCTTCGTGACGGGACTACTGTCGTGGTTTTGGTGGTGGAATTTGAGACGTTTATTTTTGGGGGGTGGACAGTCAGATTGTCAGCTCAATGCCTTGTTGGCTAGCTAGGTGGTTGATGAAGCAATAACTCGGAGCTAATCTAATGTTTGACGGTcagatttagctagctagctcaactgTTCGCTGGCCAGTTAACAGTGGATCTGACTCGATGGACCTGTACAGTAGCAGTTTGGTAACAAAGCGTTGCTTTGTCGGATAAATAAGGGGGCGATTGGCAGCATACAGGCTACCCAGCTGGTATTGTTGCTTAATGCAATAAGTCAGCAATCCTTTGGAAGATTTGGAtccacacagtcagacacagcaGTATATTGCTGTCAGGGCTGTGTGGACGGGAGTCTTCAGAccgaagacagacaggctgccaGATTCCCAGAGGGATCGAGATGACACTGGCTAACATGAAACCAGAGCGAGACGTGGTGGTGGAGGAGTTCTTTGAGTACGATGCTGAGGACTTCCTGGTGTTCCTGACCCTGTTGATCACTGAGGGACGGACCCCAGAATGTTCTGTGAAGGGTCGCACAGAGGGGCTGCACTGCCCCCCTGCAAAGTCcgccctgccgcccctacacagGCACGAGTGCAGTGACAAACTGCCACAGTGTGTGCAGGCGCGGCGTGTGCGCtcggaggtgtgtgtgttgtggaggaACAGTATTCCCATCATGGTGGAGGTGATGCTGCTGCCAGACTGTTGCTATGGAGATGAGAGTCCCCCTAGTGACCCCATCAGTGACCCAGCGATCAAACAAGATGCTCTGCTACTGGAGCGATGGACTCTGCAGCCTGTACCAcgacagagcgGTGATAGGTTTATAGAGGAGAAGACTCTGCTGTTGGCTGTTCGTTCCTACGTCTTCTTCTCCCAGCTCAGTGCCTGGCTCAGTGCTTCTCACGGCATTGTACCGCGAAACATCTTGTATagGATCAGTGCAGCAGATGAGGAGTGTGTCTGTCAGTTCTCCCAGCCCCCAGCGGAGCACCTGTTCCCTGTCCCTAACGTGTCTCAGAGTGTTGCCCTGAGGCTCAGGGTCCAGTCACTCCCCCGTCAGCCCACCTACCCCACCCTGGCCTGTAGCATACACACCGGCCTGACCCTGGCCCCACTCTACAGCAAGACCCCCAGCCTTAAGCCCAACCTCAGCCCTAACCTCTACAGCAAGACACCTAGCCTTAACCCAGGCCTGAACCCTAACCAGCCTCTGTACGAGAGGAGCCACAACTCTAAAGAGAGCCACAACAGAGCGGCTCTGCCTTTCTCTGGCCTCCCCTTCCCCAGTCCTCCCAGTCTCCCCCTGCCCAGTAAGAGAGGCCCGGACCCCACAGACAGCCATGGTCATTCTAGCCAGAATGGATCAGACCTCCCCCGGGTCAATAAGGGGCAGACATCATCCGCCTACCACCTCCCCATCTCCCCACGGCCCTCCCCCCGCCCCCACAGGAAGCTGTCCTCCACTCTGCCCCTCCCCCCTGGGGGAAAGACTGTCAGGTGGCTCTATTCCCTCACCTCAGACCCCTCCgatgacatcacacacaccacCGAGGATTATGGGAAGGCCGTCAACGGGGCCGAGAGCTCCAAGGGGCGTGGCTCCGAAGCCCCCCGGGCCTTTAAGACTTATTCTTTGGCAGAGCCCCCGCGGTGCCCCTCCCCCAGACCCTCCTCTGAGACCAATCCTCTGATTGGCTCGCTGCTCcaggagagacaggaagtcaTTGCCCGCATCGCTCAGCGCCTCAACTTCTGCGACCCGACCGCCCCCCATCTCCCCCCTGCCCTCTTCACCCCCGACACCCCCACCAAGACCCCTGTCCGGAGCAGTTACCTTGGCAACACCACGCTCAGCAAGACCAAAGGGCCAGAGGGAGCTCCACCCACTGAGGACACCCCGCCCTCCCCTTTCGACACACCCATTGGTGACGCAGCGGCTATTATCAGGGAGACGCTGTCCCCGAAACCTGTTGCCTGCCGCAGACTGAGACTCCCagaggacagagatggagagagacacagagtcagGGAGACACTGAGAgacctggagacacagagagacagagaggcattgAGAGACCgacagcgagagcgagacagtAGTCTCTTGTCTCATGCTGTTCAGGACATTACCAGACTGATTCAGGACAGActgtctgtcccctctctgtccccaaCACACAGCCGCAGCAGCAGCCCGCTACACAaaccacatacacacagcacacacacgctgtgcactgacacacacaccacacacagaggcAACAGTCATAGCAGTGGCCACTGCAACGGCTACACGCCCAGccatgacacacacactccctcacacacacctgctagCACAGACAGAGCTGGTGCTCCTCCAGAGACAGACGGTCACGGTCCAATCAGAGCCCAGAACGGCTGTTCAACACTTGAAGATCCTCAAGTCAGCCCCCGACTCCAAATCCTGCTCCAGTCTTCTTCTCTAGTCATCCCACGGCCTCTACCCCAGCCACAGTCTTCTCCTCTAGTCATCCCACGGCAtctaccccagccccagtctcaggcCTCTCCACTACTCAGCCCCAAGAGTCCCAGGGCCAAGACCCCAAAGAGTTTACACCCCAACCGCCCCCAAGAGGAgcccagaccctcctctcctaaAGATAACATCCTGAGGACCATCCAGACCCTGACAGTGACCCAGACCACCACCCTGACCCAGACCACTGCACAGACCTTGACCACCAAGTTCACCCACACCCAGACCACTGCTCTCATCCAGAACCACATGAAACCTTTGACTCAGTCTCAcaaccagacccagacagttTCTCGAACTCCACCCTCACGGACTCAGGGCAGCCCTCGAACCCAGTCCTCTAGTCTCCAGGATGAGAACCAGCCCCCCCCAGGTTCCAAGTCCTCCAGCCCCCCCGGTCCTGCTACCACACCCCCTGGCACAGAGCCCAACACTGTCCTGCGTTCTCCCTCGcccctgagaccttgtaacagtCGGAGGAAACACAACCGTCACTCTCTGGACTCCACCCTCACCAAGGCCTTCCACCCCTGTACCGGCCTGCCCCTGCTCTCCAGccctGTTCCTCAGAGGAGAACTCAGACTGGTTACTTTGACCTGGACTCTTCTCTGACCAGCTGTAAAGGACTGCCCTGGACCGCAGGGAAGAGAGTGTGTGTGAAGAGAGTGGAGGAGTCAGAAGAACCTCAGCCGCTGTTCAGTGCCAGTGCTCCACCTGCCAGCCTCAGTCTACTGGGCAACTTTGAGGAGTGTGTGTTGAACTACCGCCTGGAGCCGTTGGGGTCGGTGGAGGGTTTCATGGCCGAGGTGGGTGCTTCCGGAACCTTCTGCCCCAGTCACATGACCTTCCCCGTTGACGTTTCCTTCTACAGCATCTCTGACGACAACGCACCCTCGCCATACATGGGAGTTATCAACCTGGAGACTCTGGGTAAACGGGGCTACCGTGTCCCTCCATCAGGAACCATTCAAGTGaCCTTATTTAACCCCAATAAGACGGTGGTGAAGATGTTTGTGGTGGTGTATGACCTGAGAGCCATGCCTGCCGGCCACCAGACCTTCCTCCGTCAGAGGACCTTTTCTGTCCCCGTTCGACGGGacagcacacactcacacaaacacggcagcccagacaacacacacacacccggcaGCAGCAGGAAAGCCCTCTCCCTCGGCCAGGAACGCATCCTGCGCTACCTCATTCACCTGAGGTTCCAGACCTCCAGGTCAGGTAAAGTGTACCTCCACAGGGATATCAGACTGCTGTTCAGTAGGAAGTCTATGGAGGTAGACAGTGGAGCGGCCTACGAACTCAAGTCCTACACAGAGTCCCCAGCTGACCCAGCCTTCTCCCCGCGctgctgacacacacatacacacacacacctctatctgcactgacacacacacacacacacacactcctctatctgcactgacacacacactcttctaACTACACTGACGCATACACGCACACCCACAGAGCTGTCAGAGAGCTGGGCTCAGAGCGTTCTCATGTGGAACAGTCCAGACAGGCTCCGTCCCAGATACCTAAGGCCTGGAGATTTTGCTGACCATCTGACCATGAACAACTCCTGGCCCTACAGAACCCTGCTGTTTTCTGTGACGCTCAAACACGTATTTATACATGTAGAAAATGTATATTAAAGACATGCTAAAACACACATCAAAAACACGTTAGCGACCATGGACCACTGACTGACCAGAACAAGCAATCAAGAGACTGAGAAAATGACAAGACGACATTGAAAAAGCGCACTGTGTATTTCCACGACTGGAAATCAAAAGGAGTaatattctgttttttttgtacTGTTACAAAAACAAATCTTTAAAGTGTTGCAATAGAGAGTAACATGTAGCTTTAGTGTTTACATCATTTTCTTCGTTTACCGTCAGTTATTTAATATTTAAATGAATATTTCAGTTACTGCTTTTATGTGACATCTATCATCCTCAGCATTATGATCTAGTGCAAAACTCTGTAAATCATAATGTGTATTTTTGACATTAACTCAGATCTGAAAATATATCTATATCTTAAAGCAATCTTGAAAGCtg

Function

NR:

description
protein FAM214A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981020.1 True 5435 mRNA 0.53 12 79543079 79570938

Neighbor

gene id symbol gene type direction distance location
LOC110506775 LOC106562487 coding upstream 11574 79524809 ~ 79531505 (+)
LOC110526645 unc13c coding upstream 188120 79089592 ~ 79354959 (+)
LOC110506124 LOC101474724 coding upstream 633742 78763607 ~ 78909743 (+)
LOC110526640 LOC106562467 coding upstream 866921 78657110 ~ 78676158 (+)
LOC110526639 LOC106587637 coding upstream 1031095 78502950 ~ 78511984 (+)
LOC118936661 LOC106592882 coding downstream 900 79571838 ~ 79577990 (+)
LOC110511859 myo5a coding downstream 7584 79578522 ~ 79671531 (+)
LOC110526647 LOC106562494 coding downstream 101091 79672029 ~ 79699222 (+)
LOC110526648 LOC106587674 coding downstream 128423 79699361 ~ 79705604 (+)
nrk2 LOC106562430 coding downstream 286498 79857436 ~ 79860739 (+)
G550104 NA non-coding upstream 4080 79538494 ~ 79538999 (+)
G550101 NA non-coding upstream 4975 79535135 ~ 79538104 (+)
G550105 NA non-coding upstream 8022 79533998 ~ 79535057 (+)
G550099 NA non-coding upstream 19236 79523534 ~ 79523843 (+)
G550138 NA non-coding downstream 59450 79630388 ~ 79630627 (+)
G550142 NA non-coding downstream 76897 79647835 ~ 79648154 (+)
G550089 NA non-coding downstream 84874 79655812 ~ 79656195 (+)
G550079 NA non-coding downstream 103527 79674465 ~ 79679581 (+)
G550054 NA other upstream 63001 79479481 ~ 79480078 (+)
G549345 NA other upstream 770522 78772112 ~ 78772557 (+)
G549342 NA other upstream 773172 78769256 ~ 78769907 (+)
G548703 NA other upstream 1046609 78420860 ~ 78496470 (+)
G550265 NA other downstream 497810 80068748 ~ 80069285 (+)
G550305 NA other downstream 629232 80200170 ~ 80200529 (+)
myef2 myef2 other downstream 844509 80415414 ~ 80430972 (+)
G551043 NA other downstream 1349769 80920707 ~ 80921436 (+)

Expression


Co-expression Network