LOC118965045 (LOC106562464)


Basic Information

Item Value
gene id LOC118965045
gene name LOC106562464
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 79954799 ~ 80064775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981785.1
TTCTGTGAAACTTCTTCTATTATTGCTAGAACGGGCTAATATAATCtggctagctcgtgcttggctctgcccactatgactaatttgttccgattggaaacgacaggctgtggtctatcttgatTTAGTTATAAAACTATTTGgttgtactgcactagagtgctaaaaaatatatatattaccaaAGTTTAGCATGTCTTTGCAGGGAGAATGCTGGGCATAATATCCTGTTGCTAGGAGAACGGTAATGTCAGCACTGCAGTGTGTAAGCAAAGAGTTGTACAACTAACTATTGTGCGAACTTAGTTAGCTAGAATCTTGTTGcagataatgttagctagctaaattagcttGAGGCTATAAAACACGTTCATATAGCGATACAAGGAATGTTTTTATCTAACAGTGGAAGACATAAATCCCATTTCACAATTCATTAACGTTACCTGTTTAAAATGAGACTTGGTCCAATTGATTTAGAGCAATTGTATATGTACTCTGAAGCCGAGCAAGCATGGACTCGCTCTACACCGGAAGTGTCAACCGGAAGAAGTTAGCGGCGCTAATGTTAATGACAGCTGTTACCTAGCAACGGAACACATGCGTAATATTTTGACACTCAGGGCTGAGCATCTTTGGAGGGTCAGAGACAAAACATGGCTAAACAACAAGACCCAGAGGACGATGAAGAAATCCTGAGCACGTTTGAAAAGTTTGTTCGGAATCAGGGACTGGTTGACTGGCCCGTGGCGTTTGAGGAGAATATAGAGATATCATCCCACTTCAAACATTACAGTCATCCCAGACAGATATATGACTACTTTAAAGTAAACGTGCCATTCCCAGTGGACGTCACCATGTCCTTCTCCAAGAGCATAGAGGAGCTATATTCCAAGATAAAACTACATGCATCCATAATGTCACAAGAACAGAGCAAAAACAAGAATGGGGAGTCCGTGTTTGATGACATTAATACATATAAAATGTATGTGCAAAGAGCACATCGAATCATGAAAGAGCAGAGTGAGGCAGTGTCGCGGAGCTTGGACATCAAGGACTATGACTACCCAGGGTTTGATGCAGTCGAGGACACTGACATCCCAGGACATCCTGATGCCTTACAGCATTTGGACAGAGTATCAGAGGCCCAAGGCTTTAATCCAGGCTTCCTGAAGATCTGGAGGCCGTTCTTTCTGTGTGATCTGTCCGTGGCTGTTCTCAAAGACACATTCTGGTGGTTCTTCCTCCACAGATTTAAGCctaatgtggaggaggagagccAGTTGTTTGATCGGATCTCTGGAGCCTTTGTCTCTCTGCTGATGACCGTTCAGATGGACCTGAAGGACAAGCTCTTTAAGgtatATGCAGACTGCCTGGCCCAGGCGGTCTACGCAGCGTTCTACGGAGCGTTCCCTGAGTCCATGGAACGTCTAGGCCATGACTTCAAGACAGACCTGGCTGACCTCATCTCCCTCTGGGTGTCAGGTGTGAAGCCCACCCTGTTGTCATGGCAGAGCTGGAACCTGGGCTGGCTGGATCCTGTAGACACGTCCGGGAAGAGCCATGGAGAGTCAGCATGTGACCTGCAGATGGAGTTTGAAGAGCTGGTGTCCAGCGCCAGGAGACTAAGTCTCAGCAGCACAGAGAAGCAGAAGAGAGGAAGCATTGCTAATGCTGACTCCAGGATGGACCGCAAGAGAGAGTCCCACTACATTGGAGCAGGTCCAGAGTTCCAGCATGTCTGTTTCCAGCCCTGTGGTCAGAGTCCTCTGGTGTCTCGTTACCTGCACCTCCAAGACATCCCTACACCCGCTGGATCTGACACACGCAGGATCAGACGCACTGAGATCACCAACCTCACTCCTTCCAAACCCACCTACCAAGAGGTGCTGactgatgtggaggagaggagccaCAAAAGGCAACAGGAATACAACacGTTCTGCCAGCAGACGAAACAGGAGATAGCTGACATCCACAGAGATCGACGGATCCATAACATGAAACTCAACAGGATGAAGAAAGAGATTTTCAGTGACCGCATGGAGGTGAAGATCGCCAGCGAGGGAATCATGAATAAATGGaaCCACCCCCCGTACCGCCAGCGTCTGcagaagggagaggggaaagagaggaaagaggagtcaGAGGAGGTGAAGAATACAAACCAACCTTCTGTTTCTCCAGAGAACCGAAAGACAGCTGGACAATGACACTGCAACTTTCagcacagtgtctctctctccctctctctctctctttctctttatgcCACTCAGATCTACAGAACATGATGTCAGTGTTTTGTGCTACATTAatatatatttgacatttgtttTCATTGAAATTCACCCAGATGATTTAAATGCCAATCTTCACACTTCACCATTCACCAGTCACACTGTGATTATTTCCCTTCAGTCTGTTCTCCCTTTCTCAGACGCTGActtgaaacagtgtgtgtgtgtgtgtgtcgggccAGAGCAGGGCTAGTGTGTTTTACAAGTCATGAAGGCTCAGAAACATCACAGAAACATATTACCTCTCAGAGACTCACAGCACACcagaggagagggtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

NR:

description
protein FAM227B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981785.1 True 2605 mRNA 0.47 15 79954799 80064775

Neighbor

gene id symbol gene type direction distance location
LOC110506133 LOC106562504 coding upstream 12668 79919963 ~ 79942131 (+)
LOC110514990 LOC106587684 coding upstream 56448 79887514 ~ 79898351 (+)
nrk2 LOC106562430 coding upstream 94060 79857436 ~ 79860739 (+)
LOC110526648 LOC106587674 coding upstream 249195 79699361 ~ 79705604 (+)
LOC110526647 LOC106562494 coding upstream 255577 79672029 ~ 79699222 (+)
LOC110506137 LOC106587708 coding downstream 28698 80093473 ~ 80106535 (+)
LOC110506794 LOC106596910 coding downstream 43780 80108555 ~ 80147068 (+)
LOC110526764 fbn1 coding downstream 101408 80166183 ~ 80317535 (+)
LOC110506798 NA coding downstream 260222 80324997 ~ 80326381 (+)
myef2 myef2 coding downstream 350639 80415414 ~ 80430972 (+)
G550223 NA non-coding upstream 6211 79947761 ~ 79948588 (+)
G550222 NA non-coding upstream 9759 79944720 ~ 79945040 (+)
G550212 NA non-coding upstream 72107 79881854 ~ 79882692 (+)
G550195 NA non-coding upstream 103434 79851166 ~ 79851365 (+)
G550192 NA non-coding upstream 114615 79839975 ~ 79840184 (+)
G550284 NA non-coding downstream 19660 80084435 ~ 80084712 (+)
G550286 NA non-coding downstream 23063 80087838 ~ 80088156 (+)
G550288 NA non-coding downstream 25384 80090159 ~ 80090435 (+)
G550276 NA non-coding downstream 64149 80128924 ~ 80129152 (+)
LOC118936661 LOC106592882 other upstream 376809 79571838 ~ 79577990 (+)
G550054 NA other upstream 474721 79479481 ~ 79480078 (+)
LOC110526645 unc13c other upstream 791768 79089592 ~ 79354959 (+)
G549345 NA other upstream 1182242 78772112 ~ 78772557 (+)
G549342 NA other upstream 1184892 78769256 ~ 78769907 (+)
G550265 NA other downstream 3973 80068748 ~ 80069285 (+)
G550305 NA other downstream 135395 80200170 ~ 80200529 (+)
G551043 NA other downstream 855932 80920707 ~ 80921436 (+)
LOC110526107 scg3 other downstream 1388721 81435094 ~ 81466198 (+)

Expression


Co-expression Network