LOC110506137 (LOC106587708)


Basic Information

Item Value
gene id LOC110506137
gene name LOC106587708
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 80093473 ~ 80106535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981055.1
ATAATGCAGTACTATGCTGAAACCGGCGTAGTGTTTGGTGGCGCTGTAGAGCTGCGATGTGTTTGTTGTCTCCGAAGACCCGTCAAGATGTCTGACATGGAAGATGATTTCATGTGCGACGATGAAGAAGATTATGATCTGGAATATTCCGAGGACAGTAACTCAGAGCCAAATGTCGACTTGGAAAACCAGTACTACAActccaaagcactgaaggaggatgACCCCAAAGCAGCTCTCAACAGCTTTCAGAAGGTATtggagctggagggagagaagggagaatggGGGTTCAAAGCCCTAAAACAGATGATCAAAATCAACTTCAAGCTAACCAACTTCCCAGAGATGATGTCTCGGTACAAGCAGCTGTTGACGTACATCAGGAGCGCTGTGACCAGAAACTACTCAGAGAAGTCCATCAACTCCATCCTAGACTACATCTCCACCTCCAAACAGGTGTCACAGATGGACCTGCTGCAGGAGTTTTATGAAACGACGCTGGACGCTCTGAAGGATGCCAAGAACGACAGACTCTGGTTCAAAACTAACACAAAGCTGGGCAAGCTGTACCTGGAGAGAGAGGAATTTGGGAAGTTACAGAAGATCCTCAGACAGCTGCACCAGTCCTGTCAGaCAGATGACGGGGAGGACGACCTAAAGAAAGGCACCCAGCTCCTGGAGATCTATGCTCTGGAGATCCAGATGTACACAGCCCAGAAGAACAACAAGAAGCTGAAGGCCCTGTATGAACAGTCCCTGCACATCAAGTCTGCTATCCCTCACCCACTCATTATGGGAGTCATCAGGGAGTGTGGGGGTAAGATGCACCTGAGAGAGGGGGAGTTTGAGAAGGCCCACACAGACTTCTTTGAGGCGTTTAAGAACTACGATGAGTCAGGCAGCCCCAGGAGAACCACCTGTCTGAAGTACCTGGTGCTGGCCAACATGCTCATGAAGTCTGGAATCAACCCTTTCGACTCACAGGAGGCCAAACCCTATAAAAACGACCCAGAGATCTTGGCCATGACAAATCTAGTAAGCTCCTATcagaataatgacatcacagagttTGAGAAGATACTGAAGACCAACCATAGTAGTATCATGGATGACCCCTTCATCAGAGAACACATAGAGGAGCTGCTGCGGAACATCAGGACCCAGGTCCTTATCGCGCTCATCAAGCCTTACACTAGAATACACATCCCATTCATCTCTAAGgAGCTGAACATAGATGTTTGTGACGTGGAGAGTTTGTTGGTGCAGTGCATATTGGACAACACCATCCAAGGCCGTATCGACCAGGTCAACCAGCTGTTGGAGCTAGACtaccagaagagaggaggggcgCGCTACACTGCCTTAGACAAATGGACTAAACAACTCAACTCTCTCAACCAAGCCATCGTCAGCAAACTCACATGATTCTGACTGACATGTGACAATGGACAGCACTGAAAGATAGGAAGGAGAATCTCAATCAACTGTTCCAATGTGTCAGAATAGAAACCAAACGATCCAGTGTGGATGGGCTGAGCGGAGAGGAGCACCACAGCAGCACAGAGATGTTTTGTGATCTGACGCTGCGTTTcccagagaaggagagatactgCTTTCTAGAAGACATCAGCGCTCTCTAAGGGACATCTCGGTTTACGTCAAGCCCTTCGTGTTTGTTTTTCACAAGACTTTAGTAGAATGATTTAAGAAATATCACTGTCAACACCTTTTTAAAAGTGCTGTATTTTTTTCGGTGGGCAGTTTGAGTACAATAACACAATGGTTTATTTGTGCCTGTTGACTGGCAGCTGGTGTTGGGAAACCTTTTTCACAACATGTAGCTGCAGCATTGAATGCACGTTGGCTgttgtgaataaaacaaactaatGTTCTCCAA
>XM_036981057.1
ATAATGCAGTACTATGCTGAAACCGGCGTAGTGTTTGGTGGCGCTGTAGAGCTGCGATGTGTTTGTTGTCTCCGAAGACCCGTCAAGATGTCTGACATGGAAGATGATTTCATGTGCGACGATGAAGAAGATTATGATCTGGAATATTCCGAGGACAGTAACTCAGAGCCAAATGTCGACTTGGAAAACCAGTACTACAActccaaagcactgaaggaggatgACCCCAAAGCAGCTCTCAACAGCTTTCAGAAGGTATtggagctggagggagagaagggagaatggGGGTTCAAAGCCCTAAAACAGATGATCAAAATCAACTTCAAGCTAACCAACTTCCCAGAGATGATGTCTCGGTACAAGCAGCTGTTGACGTACATCAGGAGCGCTGTGACCAGAAACTACTCAGAGAAGTCCATCAACTCCATCCTAGACTACATCTCCACCTCCAAACAGATGGACCTGCTGCAGGAGTTTTATGAAACGACGCTGGACGCTCTGAAGGATGCCAAGAACGACAGACTCTGGTTCAAAACTAACACAAAGCTGGGCAAGCTGTACCTGGAGAGAGAGGAATTTGGGAAGTTACAGAAGATCCTCAGACAGCTGCACCAGTCCTGTCAGaCAGATGACGGGGAGGACGACCTAAAGAAAGGCACCCAGCTCCTGGAGATCTATGCTCTGGAGATCCAGATGTACACAGCCCAGAAGAACAACAAGAAGCTGAAGGCCCTGTATGAACAGTCCCTGCACATCAAGTCTGCTATCCCTCACCCACTCATTATGGGAGTCATCAGGGAGTGTGGGGGTAAGATGCACCTGAGAGAGGGGGAGTTTGAGAAGGCCCACACAGACTTCTTTGAGGCGTTTAAGAACTACGATGAGTCAGGCAGCCCCAGGAGAACCACCTGTCTGAAGTACCTGGTGCTGGCCAACATGCTCATGAAGTCTGGAATCAACCCTTTCGACTCACAGGAGGCCAAACCCTATAAAAACGACCCAGAGATCTTGGCCATGACAAATCTAGTAAGCTCCTATcagaataatgacatcacagagttTGAGAAGATACTGAAGACCAACCATAGTAGTATCATGGATGACCCCTTCATCAGAGAACACATAGAGGAGCTGCTGCGGAACATCAGGACCCAGGTCCTTATCGCGCTCATCAAGCCTTACACTAGAATACACATCCCATTCATCTCTAAGgAGCTGAACATAGATGTTTGTGACGTGGAGAGTTTGTTGGTGCAGTGCATATTGGACAACACCATCCAAGGCCGTATCGACCAGGTCAACCAGCTGTTGGAGCTAGACtaccagaagagaggaggggcgCGCTACACTGCCTTAGACAAATGGACTAAACAACTCAACTCTCTCAACCAAGCCATCGTCAGCAAACTCACATGATTCTGACTGACATGTGACAATGGACAGCACTGAAAGATAGGAAGGAGAATCTCAATCAACTGTTCCAATGTGTCAGAATAGAAACCAAACGATCCAGTGTGGATGGGCTGAGCGGAGAGGAGCACCACAGCAGCACAGAGATGTTTTGTGATCTGACGCTGCGTTTcccagagaaggagagatactgCTTTCTAGAAGACATCAGCGCTCTCTAAGGGACATCTCGGTTTACGTCAAGCCCTTCGTGTTTGTTTTTCACAAGACTTTAGTAGAATGATTTAAGAAATATCACTGTCAACACCTTTTTAAAAGTGCTGTATTTTTTTCGGTGGGCAGTTTGAGTACAATAACACAATGGTTTATTTGTGCCTGTTGACTGGCAGCTGGTGTTGGGAAACCTTTTTCACAACATGTAGCTGCAGCATTGAATGCACGTTGGCTgttgtgaataaaacaaactaatGTTCTCCAA
>XM_036981054.1
CCGGCGTAGTGTTTGGTGGCGCTGTAGAGCTGCGATGTGTTTGTTGTCTCCGAAGACCCGTCAAGATGTCTGACATGGAAGATGATTTCATGTGCGACGATGAAGAAGATTATGATCTGGTAAGCGAATATTCCGAGGACAGTAACTCAGAGCCAAATGTCGACTTGGAAAACCAGTACTACAActccaaagcactgaaggaggatgACCCCAAAGCAGCTCTCAACAGCTTTCAGAAGGTATtggagctggagggagagaagggagaatggGGGTTCAAAGCCCTAAAACAGATGATCAAAATCAACTTCAAGCTAACCAACTTCCCAGAGATGATGTCTCGGTACAAGCAGCTGTTGACGTACATCAGGAGCGCTGTGACCAGAAACTACTCAGAGAAGTCCATCAACTCCATCCTAGACTACATCTCCACCTCCAAACAGGTGTCACAGATGGACCTGCTGCAGGAGTTTTATGAAACGACGCTGGACGCTCTGAAGGATGCCAAGAACGACAGACTCTGGTTCAAAACTAACACAAAGCTGGGCAAGCTGTACCTGGAGAGAGAGGAATTTGGGAAGTTACAGAAGATCCTCAGACAGCTGCACCAGTCCTGTCAGaCAGATGACGGGGAGGACGACCTAAAGAAAGGCACCCAGCTCCTGGAGATCTATGCTCTGGAGATCCAGATGTACACAGCCCAGAAGAACAACAAGAAGCTGAAGGCCCTGTATGAACAGTCCCTGCACATCAAGTCTGCTATCCCTCACCCACTCATTATGGGAGTCATCAGGGAGTGTGGGGGTAAGATGCACCTGAGAGAGGGGGAGTTTGAGAAGGCCCACACAGACTTCTTTGAGGCGTTTAAGAACTACGATGAGTCAGGCAGCCCCAGGAGAACCACCTGTCTGAAGTACCTGGTGCTGGCCAACATGCTCATGAAGTCTGGAATCAACCCTTTCGACTCACAGGAGGCCAAACCCTATAAAAACGACCCAGAGATCTTGGCCATGACAAATCTAGTAAGCTCCTATcagaataatgacatcacagagttTGAGAAGATACTGAAGACCAACCATAGTAGTATCATGGATGACCCCTTCATCAGAGAACACATAGAGGAGCTGCTGCGGAACATCAGGACCCAGGTCCTTATCGCGCTCATCAAGCCTTACACTAGAATACACATCCCATTCATCTCTAAGgAGCTGAACATAGATGTTTGTGACGTGGAGAGTTTGTTGGTGCAGTGCATATTGGACAACACCATCCAAGGCCGTATCGACCAGGTCAACCAGCTGTTGGAGCTAGACtaccagaagagaggaggggcgCGCTACACTGCCTTAGACAAATGGACTAAACAACTCAACTCTCTCAACCAAGCCATCGTCAGCAAACTCACATGATTCTGACTGACATGTGACAATGGACAGCACTGAAAGATAGGAAGGAGAATCTCAATCAACTGTTCCAATGTGTCAGAATAGAAACCAAACGATCCAGTGTGGATGGGCTGAGCGGAGAGGAGCACCACAGCAGCACAGAGATGTTTTGTGATCTGACGCTGCGTTTcccagagaaggagagatactgCTTTCTAGAAGACATCAGCGCTCTCTAAGGGACATCTCGGTTTACGTCAAGCCCTTCGTGTTTGTTTTTCACAAGACTTTAGTAGAATGATTTAAGAAATATCACTGTCAACACCTTTTTAAAAGTGCTGTATTTTTTTCGGTGGGCAGTTTGAGTACAATAACACAATGGTTTATTTGTGCCTGTTGACTGGCAGCTGGTGTTGGGAAACCTTTTTCACAACATGTAGCTGCAGCATTGAATGCACGTTGGCTgttgtgaataaaacaaactaatGTTCTCCAA
>XM_036981056.1
CCGGCGTAGTGTTTGGTGGCGCTGTAGAGCTGCGATGTGTTTGTTGTCTCCGAAGACCCGTCAAGATGTCTGACATGGAAGATGATTTCATGTGCGACGATGAAGAAGATTATGATCTGGTAAGCGAATATTCCGAGGACAGTAACTCAGAGCCAAATGTCGACTTGGAAAACCAGTACTACAActccaaagcactgaaggaggatgACCCCAAAGCAGCTCTCAACAGCTTTCAGAAGGTATtggagctggagggagagaagggagaatggGGGTTCAAAGCCCTAAAACAGATGATCAAAATCAACTTCAAGCTAACCAACTTCCCAGAGATGATGTCTCGGTACAAGCAGCTGTTGACGTACATCAGGAGCGCTGTGACCAGAAACTACTCAGAGAAGTCCATCAACTCCATCCTAGACTACATCTCCACCTCCAAACAGATGGACCTGCTGCAGGAGTTTTATGAAACGACGCTGGACGCTCTGAAGGATGCCAAGAACGACAGACTCTGGTTCAAAACTAACACAAAGCTGGGCAAGCTGTACCTGGAGAGAGAGGAATTTGGGAAGTTACAGAAGATCCTCAGACAGCTGCACCAGTCCTGTCAGaCAGATGACGGGGAGGACGACCTAAAGAAAGGCACCCAGCTCCTGGAGATCTATGCTCTGGAGATCCAGATGTACACAGCCCAGAAGAACAACAAGAAGCTGAAGGCCCTGTATGAACAGTCCCTGCACATCAAGTCTGCTATCCCTCACCCACTCATTATGGGAGTCATCAGGGAGTGTGGGGGTAAGATGCACCTGAGAGAGGGGGAGTTTGAGAAGGCCCACACAGACTTCTTTGAGGCGTTTAAGAACTACGATGAGTCAGGCAGCCCCAGGAGAACCACCTGTCTGAAGTACCTGGTGCTGGCCAACATGCTCATGAAGTCTGGAATCAACCCTTTCGACTCACAGGAGGCCAAACCCTATAAAAACGACCCAGAGATCTTGGCCATGACAAATCTAGTAAGCTCCTATcagaataatgacatcacagagttTGAGAAGATACTGAAGACCAACCATAGTAGTATCATGGATGACCCCTTCATCAGAGAACACATAGAGGAGCTGCTGCGGAACATCAGGACCCAGGTCCTTATCGCGCTCATCAAGCCTTACACTAGAATACACATCCCATTCATCTCTAAGgAGCTGAACATAGATGTTTGTGACGTGGAGAGTTTGTTGGTGCAGTGCATATTGGACAACACCATCCAAGGCCGTATCGACCAGGTCAACCAGCTGTTGGAGCTAGACtaccagaagagaggaggggcgCGCTACACTGCCTTAGACAAATGGACTAAACAACTCAACTCTCTCAACCAAGCCATCGTCAGCAAACTCACATGATTCTGACTGACATGTGACAATGGACAGCACTGAAAGATAGGAAGGAGAATCTCAATCAACTGTTCCAATGTGTCAGAATAGAAACCAAACGATCCAGTGTGGATGGGCTGAGCGGAGAGGAGCACCACAGCAGCACAGAGATGTTTTGTGATCTGACGCTGCGTTTcccagagaaggagagatactgCTTTCTAGAAGACATCAGCGCTCTCTAAGGGACATCTCGGTTTACGTCAAGCCCTTCGTGTTTGTTTTTCACAAGACTTTAGTAGAATGATTTAAGAAATATCACTGTCAACACCTTTTTAAAAGTGCTGTATTTTTTTCGGTGGGCAGTTTGAGTACAATAACACAATGGTTTATTTGTGCCTGTTGACTGGCAGCTGGTGTTGGGAAACCTTTTTCACAACATGTAGCTGCAGCATTGAATGCACGTTGGCTgttgtgaataaaacaaactaatGTTCTCCAA

Function

NR:

description
COP9 signalosome complex subunit 2-like isoform X3

GO: NA

KEGG:

id description
K12176 COPS2, CSN2, TRIP15; COP9 signalosome complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981055.1 False 1900 mRNA 0.47 13 80093473 80106535
XM_036981057.1 False 1891 mRNA 0.47 13 80093473 80106535
XM_036981054.1 False 1884 mRNA 0.47 13 80093495 80106535
XM_036981056.1 True 1875 mRNA 0.47 13 80093495 80106535

Neighbor

gene id symbol gene type direction distance location
LOC118965045 LOC106562464 coding upstream 28698 79954799 ~ 80064775 (+)
LOC110506133 LOC106562504 coding upstream 151342 79919963 ~ 79942131 (+)
LOC110514990 LOC106587684 coding upstream 195122 79887514 ~ 79898351 (+)
nrk2 LOC106562430 coding upstream 232734 79857436 ~ 79860739 (+)
LOC110526648 LOC106587674 coding upstream 387869 79699361 ~ 79705604 (+)
LOC110506794 LOC106596910 coding downstream 2020 80108555 ~ 80147068 (+)
LOC110526764 fbn1 coding downstream 59648 80166183 ~ 80317535 (+)
LOC110506798 NA coding downstream 218462 80324997 ~ 80326381 (+)
myef2 myef2 coding downstream 308879 80415414 ~ 80430972 (+)
LOC110516752 NA coding downstream 371284 80477819 ~ 80479832 (+)
G550288 NA non-coding upstream 3038 80090159 ~ 80090435 (+)
G550286 NA non-coding upstream 5317 80087838 ~ 80088156 (+)
G550284 NA non-coding upstream 8761 80084435 ~ 80084712 (+)
G550223 NA non-coding upstream 144885 79947761 ~ 79948588 (+)
G550222 NA non-coding upstream 148433 79944720 ~ 79945040 (+)
G550276 NA non-coding downstream 22389 80128924 ~ 80129152 (+)
G550296 NA non-coding downstream 31595 80138130 ~ 80139660 (+)
G550300 NA non-coding downstream 61171 80167706 ~ 80170624 (+)
G550265 NA other upstream 24188 80068748 ~ 80069285 (+)
LOC118936661 LOC106592882 other upstream 515483 79571838 ~ 79577990 (+)
G550054 NA other upstream 613395 79479481 ~ 79480078 (+)
LOC110526645 unc13c other upstream 930442 79089592 ~ 79354959 (+)
G549345 NA other upstream 1320916 78772112 ~ 78772557 (+)
G550305 NA other downstream 93635 80200170 ~ 80200529 (+)
G551043 NA other downstream 814172 80920707 ~ 80921436 (+)
LOC110526107 scg3 other downstream 1346961 81435094 ~ 81466198 (+)
LOC110506150 LOC106562517 other downstream 1738382 81815343 ~ 81860498 (+)

Expression


Co-expression Network