LOC110506823 (LOC105015051)


Basic Information

Item Value
gene id LOC110506823
gene name LOC105015051
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81551186 ~ 81568248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981106.1
CACCCAGAAACAACCGTTGCCAGCTGGAGTGCTCCATGCATCTCGGATGAATAACATCTGCTTTACAGTGTGTGTTTAGGATAGATGGATCAGAAGAGAGTCtaaccctctctgttctctctctgcagGCTGCAAACCAACCCTTTACTCCCCCAACAGCTGGCCAAGATGAGCTCATTTGTTATGGTTGGGGTTGTGATAGAAGATAGGGATTCTGTAATGAGAGGGGCCCCATAACTACACAGCAGGCAGAAGTCAACAGAAAGAGATGACAAGGATGATGGTGGCTCAACCTCGCCCCCTGTTGGTGATATTACTGCAGCTGCTCCTCTCCTGCTTGCCCGCCCTCGGATACTCCTCCAACAGATTCTTCTACCAAGACATTCTCAACGGAAACGGCAATGGAGAGATCCACTTTAACGGTGTAAAGCTCCATGTGGACTCCTCCCAGCCCTCTGTGTTCGCTTTGCGGGGGAGTAACGCAACCCTATCCTGCCGATACTGGTACGAGCCAGAATTGAGCTCCCCCAGGAGGGTGCGGGTGAAGTGGTCCTGGCTTCCCATTGTGGGGGGCCATGAGACAGACGTTCTAGTGGCCATCGGGCCCCGCATTCACAGCTTTGGGGATTTCAGGGACCGGGTGCATCTCAGACAGGACTCACCAGGAGATGCTTCGCTGGTCATGACTGAACTCCAGCTCAATGACACGGGTCGTTACCGCTGTGAGGTCATCGACGGGCTGGAGGACAAGAGCGCCACTGTTAACCTCGAGCTACGAGGTGTGGTGTTTCCCTACCAGCCTCCTCACGGGCGCTACAATCTGACCTACCATGATGCTCAGCAAGTCTGCCAGGAGCAGGACTCCACTCTGGCCACCTTCGAGCAGTTGTTCCAGGCCTGGGAGGAGGGGTTGGACTGGTGCAACGCAGGTTGGCTGGCTGACGGGACAGTGCAGTACCCAATCACCAAGTCCCGGAGCCCCTGTGGGGGGCTGGGCCTCGCCCCCGGGGTTAGGAGCTACGGTAGACGCCACCGCCACCTCCACCGCTACGACgccttctgtttctcctcctccctccgagGTAAGGTCTACTACCTCCAGCTCCCCCAGAAGGTCAACCTCACTGAGGCCCAGCAGGCGTGCTTCAACGACGGGGCCCAGATTGCCAAGGTGGGCCAGCTCTACGCTGCCTGGAAGTTCATGGGCCTGGACCGCTGTGATGCCGGATGGCTTGCTGACGGGAGCCTGCGCTACCCCATCAACAACCCCCGCCGCAACTGTGGCCCCATGGAACCAGGGGTGCGCAGCTTTGGGTTTGCCCCACCGCACCACAAGCACGGAGTGTACTGCTACAGTGCAGTTGTGGTGTTTCCCTACCAGCCTCCTCACGGGCGCTACAATCTGACCTACCATGATGCTCAGCAAGTCTGCCAGGAGCAGGACTCCACTCTGGCCACCTTCGAGCAGTTGTTCCAGGCCTGGGAGGAGGGTCTGAACTGGTGCAacgcaggctggctggctgacgggaCAGTGCAGTACCCCATCACCAAGCCCCGAAGGCCCTGTGGGGGACTCGGCCTCTCCCCCGGGGTTAGGAGTTACGGTAGTCGCCACCGCCACCTCCACCGCTACGATGTGTtttgctcctcctcccccctccgaGGTAAGGTCTACTACCTCCAGCTCCCCCAGAAGGTCAACCTCACTGAGGCCCAGCAGGCGTGCTTCAACGACGGGGCCCAGATAGCCAAGGTGGGCCAGCTCTATGTCGCCTGGAGGTTCATGGGCCTGAACCACTGTGATGCCGGATGGCTCGCCGATGGGAGCCTGCGCTACCCCATCACCAAACCCAGCCGCAACTGTGGCCCCCTGGAACCAGGGGTGCGCAGCTTTGGGTTCCCCCCTCCATACCAGAAGCATGGGGTGTACTGCTACAGTGCAGCAGGTTAGAAGCACCATGGTGAACATGCATTGCTCACACAGGATCAAACACTCACTGCATCTAGCCTGTGGTCCACGAGATCAGGAACATTTGTCGTAGTCCACCATTCAAGGACTTGAGATTTccttgctctgtttttttggcGGTATTTGATAGGGACAGATATAATCTAGAGATTGAATGAACAACAGTCAGATGCACCATCATACCTGAGCTAATTTCCAGTGGTTGTCCTCAGATTATCATTGAAGTACACTAGATAGTATTAAAACATCTACACAGTTGTTCTGATGTCATGAGCCAGATCTCTACAGCATGCATATCTATGACTGTTGATAGATGTGTTATATTGTAATATAATGTATGATTACTATACCTACACAACTGTAGTACATTATGGACCCACCTACATTTTGTTGTAGCCTATAATGTGATCCCTCACTATGTGTGAATGAGCCTGTAGTTAAACCCGGACCTTATGCGTATTGTTAGTTCAACTTCCTGTATTGTATGCATTTACTGTTCTCTCTTTGTAAACATTTTCCTGTACGACATAGGAGCTGATCTCAGCTGATATTTTTGTTAAATAAATTGTCTACCCTTTAA
>XM_036981105.1
ACCCAGAAACAACCGTTGCCAGCTGGAGTGCTCCATGCATCTCGGATGAATAACATCTGCTTTACAGTGTGTGTTTAGGATAGATGGATCAGAAGAGAGTCtaaccctctctgttctctctctgcagGCTGCAAACCAACCCTTTACTCCCCCAACAGCTGGCCAAGATGAGCTCATTTGTTATGGTTGGGGTTGTGATAGAAGATAGGGATTCTGTAATGAGAGGGGCCCCATAACTACACAGCAGGCAGAAGTCAACAGAAAGAGATGACAAGGATGATGGTGGCTCAACCTCGCCCCCTGTTGGTGATATTACTGCAGCTGCTCCTCTCCTGCTTGCCCGCCCTCGGATACTCCTCCAACAGATTCTTCTACCAAGACATTCTCAACGGAAACGGCAATGGAGAGATCCACTTTAACGGTGTAAAGCTCCATGTGGACTCCTCCCAGCCCTCTGTGTTCGCTTTGCGGGGGAGTAACGCAACCCTATCCTGCCGATACTGGTACGAGCCAGAATTGAGCTCCCCCAGGAGGGTGCGGGTGAAGTGGTCCTGGCTTCCCATTGTGGGGGGCCATGAGACAGACGTTCTAGTGGCCATCGGGCCCCGCATTCACAGCTTTGGGGATTTCAGGGACCGGGTGCATCTCAGACAGGACTCACCAGGAGATGCTTCGCTGGTCATGACTGAACTCCAGCTCAATGACACGGGTCGTTACCGCTGTGAGGTCATCGACGGGCTGGAGGACAAGAGCGCCACTGTTAACCTCGAGCTACGAGGTGTGGTGTTTCCCTACCAGCCTCCTCACGGGCGCTACAATCTGACCTACCATGATGCTCAGCAAGTCTGCCAGGAGCAGGACTCCACTCTGGCCACCTTCGAGCAGTTGTTCCAGGCCTGGGAGGAGGGGTTGGACTGGTGCAACGCAGGTTGGCTGGCTGACGGGACAGTGCAGTACCCAATCACCAAGTCCCGGAGCCCCTGTGGGGGGCTGGGCCTCGCCCCCGGGGTTAGGAGCTACGGTAGACGCCACCGCCACCTCCACCGCTACGACgccttctgtttctcctcctccctccgagGTAAGGTCTACTACCTCCAGCTCCCCCAGAAGGTCAACCTCACTGAGGCCCAGCAGGCGTGCTTCAACGACGGGGCCCAGATTGCCAAGGTGGGCCAGCTCTACGCTGCCTGGAAGTTCATGGGCCTGGACCGCTGTGATGCCGGATGGCTTGCTGACGGGAGCCTGCGCTACCCCATCAACAACCCCCGCCGCAACTGTGGCCCCATGGAACCAGGGGTGCGCAGCTTTGGGTTTGCCCCACCGCACCACAAGCACGGAGTGTACTGCTACAGTGCAGTTGTGGTGTTTCCCTACCAGCCTCCTCACGGGCGCTACAATCTGACCTACCATGATGCTCAGCAAGTCTGCCAGGAGCAGGACTCCACTCTGGCCACCTTCGAGCAGTTGTTCCAGGCCTGGGAGGAGGGTCTGAACTGGTGCAacgcaggctggctggctgacgggaCAGTGCAGTACCCCATCACCAAGCCCCGAAGGCCCTGTGGGGGACTCGGCCTCTCCCCCGGGGTTAGGAGTTACGGTAGTCGCCACCGCCACCTCCACCGCTACGATGTGTtttgctcctcctcccccctccgaGGTAAGGTCTACTACCTCCAGCTCCCCCAGAAGGTCAACCTCACTGAGGCCCAGCAGGCGTGCTTCAACGACGGGGCCCAGATAGCCAAGGTGGGCCAGCTCTATGTCGCCTGGAGGTTCATGGGCCTGAACCACTGTGATGCCGGATGGCTCGCCGATGGGAGCCTGCGCTACCCCATCACCAAACCCAGCCGCAACTGTGGCCCCCTGGAACCAGGGGTGCGCAGCTTTGGGTTCCCCCCTCCATACCAGAAGCATGGGGTGTACTGCTACAGTGCAGGTATGCAGTAAATCTGATAGATGTGATACATCTACATATCACCAATCTCACATCTCTTCTAGTATGGTAACAGATCACAATCCAGAAATGAATAGGTGTATCTCATGAATAGAAATTCTAGAATTACTATATTAGGATGCGAAGGTTGCATTATGGAGTGAAGTTGTGAGAATTTCTAATGTAGCTGGGGCCTGCTATTAACAACTGGGAGAATTATCTGTCTGTACTTAGTGGCTGTACATGTTTACTATGGTCCTCCTTGTGAGCAGCCACCCTTGTTATTTACACCAGCAGGTTAGAAGCACCATGGTGAACATGCATTGCTCACACAGGATCAAACACTCACTGCATCTAGCCTGTGGTCCACGAGATCAGGAACATTTGTCGTAGTCCACCATTCAAGGACTTGAGATTTccttgctctgtttttttggcGGTATTTGATAGGGACAGATATAATCTAGAGATTGAATGAACAACAGTCAGATGCACCATCATACCTGAGCTAATTTCCAGTGGTTGTCCTCAGATTATCATTGAAGTACACTAGATAGTATTAAAACATCTACACAGTTGTTCTGATGTCATGAGCCAGATCTCTACAGCATGCATATCTATGACTGTTGATAGATGTGTTATATTGTAATATAATGTATGATTACTATACCTACACAACTGTAGTACATTATGGACCCACCTACATTTTGTTGTAGCCTATAATGTGATCCCTCACTATGTGTGAATGAGCCTGTAGTTAAACCCGGACCTTATGCGTATTGTTAGTTCAACTTCCTGTATTGTATGCATTTACTGTTCTCTCTTTGTAAACATTTTCCTGTACGACATAGGAGCTGATCTCAGCTGATATTTTTGTTAAATAAATTGTCTACCCTTTAA
>XM_036981107.1
GGGGAAAGTGACTCAATTCATGCAGTGTATTAGAGCATGTCCGTCATTATTTCTGCTGACCTGGCAATTATGCATTGGATCCGTTTATAATGAAAACAAATGGTCAGATGGATCGGTTTTGCTTTGTTTCTAATAAATTCACACAACCGTAAATTACTCAAGGTTTTTGGGACAACTTGTGGATTATTTTCATGTATTCTTTTGAAGCCAAGTACTTGGATATGGTTTTTGTGTCATCATTGGGGTCAGAATCCATAGTGCCACTATAACCACAGGCGGGTACATTTTCTGAGGACCGTCCAAGAACTCCGCATACTTACACATTTTTTCTGCTGAACATCCATCAGAAGAAGCTGCATCTCTCCCTTTTCTTTTACATAATATTTTGGGGTTTAATAAAAACTCGAAGAAAAGTCACGCGGCATTATACCAGCTAGTTGTTAAACTTGACAAGGATGATGGTGGCTCAACCTCGCCCCCTGTTGGTGATATTACTGCAGCTGCTCCTCTCCTGCTTGCCCGCCCTCGGATACTCCTCCAACAGATTCTTCTACCAAGACATTCTCAACGGAAACGGCAATGGAGAGATCCACTTTAACGGTGTAAAGCTCCATGTGGACTCCTCCCAGCCCTCTGTGTTCGCTTTGCGGGGGAGTAACGCAACCCTATCCTGCCGATACTGGTACGAGCCAGAATTGAGCTCCCCCAGGAGGGTGCGGGTGAAGTGGTCCTGGCTTCCCATTGTGGGGGGCCATGAGACAGACGTTCTAGTGGCCATCGGGCCCCGCATTCACAGCTTTGGGGATTTCAGGGACCGGGTGCATCTCAGACAGGACTCACCAGGAGATGCTTCGCTGGTCATGACTGAACTCCAGCTCAATGACACGGGTCGTTACCGCTGTGAGGTCATCGACGGGCTGGAGGACAAGAGCGCCACTGTTAACCTCGAGCTACGAGGTGTGGTGTTTCCCTACCAGCCTCCTCACGGGCGCTACAATCTGACCTACCATGATGCTCAGCAAGTCTGCCAGGAGCAGGACTCCACTCTGGCCACCTTCGAGCAGTTGTTCCAGGCCTGGGAGGAGGGGTTGGACTGGTGCAACGCAGGTTGGCTGGCTGACGGGACAGTGCAGTACCCAATCACCAAGTCCCGGAGCCCCTGTGGGGGGCTGGGCCTCGCCCCCGGGGTTAGGAGCTACGGTAGACGCCACCGCCACCTCCACCGCTACGACgccttctgtttctcctcctccctccgagGTAAGGTCTACTACCTCCAGCTCCCCCAGAAGGTCAACCTCACTGAGGCCCAGCAGGCGTGCTTCAACGACGGGGCCCAGATTGCCAAGGTGGGCCAGCTCTACGCTGCCTGGAAGTTCATGGGCCTGGACCGCTGTGATGCCGGATGGCTTGCTGACGGGAGCCTGCGCTACCCCATCAACAACCCCCGCCGCAACTGTGGCCCCATGGAACCAGGGGTGCGCAGCTTTGGGTTTGCCCCACCGCACCACAAGCACGGAGTGTACTGCTACAGTGCAGTTGTGGTGTTTCCCTACCAGCCTCCTCACGGGCGCTACAATCTGACCTACCATGATGCTCAGCAAGTCTGCCAGGAGCAGGACTCCACTCTGGCCACCTTCGAGCAGTTGTTCCAGGCCTGGGAGGAGGGTCTGAACTGGTGCAacgcaggctggctggctgacgggaCAGTGCAGTACCCCATCACCAAGCCCCGAAGGCCCTGTGGGGGACTCGGCCTCTCCCCCGGGGTTAGGAGTTACGGTAGTCGCCACCGCCACCTCCACCGCTACGATGTGTtttgctcctcctcccccctccgaGGTAAGGTCTACTACCTCCAGCTCCCCCAGAAGGTCAACCTCACTGAGGCCCAGCAGGCGTGCTTCAACGACGGGGCCCAGATAGCCAAGGTGGGCCAGCTCTATGTCGCCTGGAGGTTCATGGGCCTGAACCACTGTGATGCCGGATGGCTCGCCGATGGGAGCCTGCGCTACCCCATCACCAAACCCAGCCGCAACTGTGGCCCCCTGGAACCAGGGGTGCGCAGCTTTGGGTTCCCCCCTCCATACCAGAAGCATGGGGTGTACTGCTACAGTGCAGGTATGCAGTAAATCTGATAGATGTGATACATCTACATATCACCAATCTCACATCTCTTCTAGTATGGTAACAGATCACAATCCAGAAATGAATAGGTGTATCTCATGAATAGAAATTCTAGAATTACTATATTAGGATGCGAAGGTTGCATTATGGAGTGAAGTTGTGAGAATTTCTAATGTAGCTGGGGCCTGCTATTAACAACTGGGAGAATTATCTGTCTGTACTTAGTGGCTGTACATGTTTACTATGGTCCTCCTTGTGAGCAGCCACCCTTGTTATTTACACCAGCAGGTTAGAAGCACCATGGTGAACATGCATTGCTCACACAGGATCAAACACTCACTGCATCTAGCCTGTGGTCCACGAGATCAGGAACATTTGTCGTAGTCCACCATTCAAGGACTTGAGATTTccttgctctgtttttttggcGGTATTTGATAGGGACAGATATAATCTAGAGATTGAATGAACAACAGTCAGATGCACCATCATACCTGAGCTAATTTCCAGTGGTTGTCCTCAGATTATCATTGAAGTACACTAGATAGTATTAAAACATCTACACAGTTGTTCTGATGTCATGAGCCAGATCTCTACAGCATGCATATCTATGACTGTTGATAGATGTGTTATATTGTAATATAATGTATGATTACTATACCTACACAACTGTAGTACATTATGGACCCACCTACATTTTGTTGTAGCCTATAATGTGATCCCTCACTATGTGTGAATGAGCCTGTAGTTAAACCCGGACCTTATGCGTATTGTTAGTTCAACTTCCTGTATTGTATGCATTTACTGTTCTCTCTTTGTAAACATTTTCCTGTACGACATAGGAGCTGATCTCAGCTGATATTTTTGTTAAATAAATTGTCTACCCTTTAA

Function

NR:

description
hyaluronan and proteoglycan link protein 3-like isoform X1

GO: NA

KEGG:

id description
K06852 HAPLN3; hyaluronan and proteoglycan link protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981106.1 False 2549 mRNA 0.54 9 81551186 81568248
XM_036981105.1 False 2839 mRNA 0.53 8 81551187 81568248
XM_036981107.1 True 3018 mRNA 0.51 8 81555571 81568248

Neighbor

gene id symbol gene type direction distance location
LOC110506821 LOC106562526 coding upstream 3845 81524807 ~ 81547341 (+)
LOC110526107 scg3 coding upstream 84988 81435094 ~ 81466198 (+)
LOC110526110 LOC106562529 coding upstream 200879 81302763 ~ 81350307 (+)
LOC110506818 NA coding upstream 266199 81269044 ~ 81284987 (+)
LOC110506811 LOC106562533 coding upstream 398357 81140223 ~ 81154890 (+)
LOC118964937 NA coding downstream 91648 81659896 ~ 81661991 (+)
LOC110526974 LOC106562522 coding downstream 113636 81681884 ~ 81734963 (+)
LOC110506150 LOC106562517 coding downstream 247095 81815343 ~ 81860498 (+)
trnap-ugg-9 NA coding downstream 301002 81869250 ~ 81869323 (+)
cdkn2aip LOC106587807 coding downstream 315145 81883393 ~ 81888699 (+)
G551342 NA non-coding upstream 63556 81486998 ~ 81487630 (+)
G551339 NA non-coding upstream 69844 81481108 ~ 81481342 (+)
G551334 NA non-coding upstream 76922 81473144 ~ 81474264 (+)
G551333 NA non-coding upstream 78327 81470881 ~ 81472859 (+)
G551326 NA non-coding upstream 117009 81429221 ~ 81434177 (+)
G551370 NA non-coding downstream 5180 81573428 ~ 81576841 (+)
G551394 NA non-coding downstream 42946 81611194 ~ 81611400 (+)
G551405 NA non-coding downstream 76513 81644761 ~ 81645951 (+)
G551407 NA non-coding downstream 80780 81649028 ~ 81649315 (+)
G551373 NA non-coding downstream 87232 81655480 ~ 81656060 (+)
G551043 NA other upstream 629750 80920707 ~ 80921436 (+)
myef2 myef2 other upstream 1120257 80415414 ~ 80430972 (+)
G550305 NA other upstream 1350657 80200170 ~ 80200529 (+)
G550265 NA other upstream 1481901 80068748 ~ 80069285 (+)
LOC118964938 LOC106562620 other downstream 453803 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 other downstream 561586 82128769 ~ 82198551 (+)
G551805 NA other downstream 696721 82264969 ~ 82265749 (+)
G551889 LOC106587688 other downstream 908670 82476918 ~ 82483802 (+)

Expression


Co-expression Network