LOC110506160 (LOC106562619)


Basic Information

Item Value
gene id LOC110506160
gene name LOC106562619
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 81944654 ~ 82019523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981135.1
CATCAGTTAggtttgaagaagaaaaaaagtctCAGCTCTCGACTCAAACCGTGCAGTGGAGCAGCAAGGGGGCCGAGAGCGCCTTCCCGACTTTTTCAATTATATAGCCCGCAAAGAGAACTGGACGAAACTATAGGCTATCATCTCAACTACTATAACTTGACCTCGTCAACCCGGGGAGTGAGGATTATAACACTTATTCAGAGAATATGTCAACCTCAGACGAGGCAGACGGGCTTCGGCCGAGATATGGGTCTGTTCTGGATGGTGTCGAGCGACTCACAGCAGAGGAGATGGACGAGAGGAGGCAGCAGAACATGGCCTACGAATACCTCTGTCATCTCGAGGAGGCTAAACGGTGGATGGAGGCGTGTCTGGACGAGGAGCTCCCGCCCACCACAGAGCTGGAGGAAGGGCTTAGGAACGGGGTGTACCTGGCCAAACTCGGCAACTTCTTCGCCCCACAAACCGTTTCCATCAAGAAAATCTACGACCGCGAGCAGACCCGCTACAAGGCCACTGGGCTTCATTTTAGACATACAGACAATGTCATCCAGTGGCTAAACGCCATGACAGAGAAGGGCCTGCCAAAGATATTCTATCCAGAGACTACAGACATCTATGATAGGAAGAACATGCCGCGCTGCATCTACTGCATACATGctctcagTTTGTACCTGTTCAAGCTGGGTCTAGCCCCTCAAATCCAAGACCTGTATGGCAAGGTGGACTTCACAGAGGAGGAGATTAACAACATGAAGAGTGAACTGGAGAAGTACGGAATCCAGATGCCTGCCTTCAGCAAGATTGGTGGCATCCTGGCCAATGAGCTGTCAGTGGATGAGGCTGCGTTGCATGCAGCAGTGATAGCCATCAATGAGGCCATAGACCAGGGGGTTCCCGAGGGCACCATGGCTGCCATGCAGAACCCCAACGCCATGCTGCTTCAGATGAACACCTGCTCTGCCCAGCACTACCAGGACATGCTGCACAGTGCCAAGGCTGAGAAGGTGGCCAACTCACGCAAACGGCTGGGGGAGAACTCTGACGCAGAGAGAGATGTCTATGAAGAGCTCCTCACACAGGCTGAGATCCAGGGCAACGTCAACAAGGTCAACtTGACCAGTTCCCTGAGTGCAGCCGAGCAGGCCCTGCTGAGTGGTGATGAAGACCGGCTGTATGAGGCACTTCGCTCCCAGGCTTTGGGCCTACACCGCCTGCAGGCCCAGAACAAGGGCTGGTACCTCAAACAGCTGATGGCTGCCCGCGAGGACaaagaacagAATTCTCCAGGGGAGGTGCTGACTAAAGATGAGTTGCAAACTGGAGTAGATGCAGCCAATGGGATTGCAGCAGGCTACCAGAAAATGTTGCAGGCGGTGGAGAGGATAAACGCGGCCGTCAGAGCGGGTGTGCCCGAGAACACGGCAGCAGAGCTGATGAACCCTGATGCCCAGCTGCCCGAGGTCTACCCCAGCGCTGCCGACCTCTATCAGAGAGAGCTGACCAGCCTGCAGCAGCAGAGTCCAGatGGTTCTCTGTCCCATCCGGAGCTGCTGGTTGCCGTGGAGATGTTGTCGTCGGTGGTGTTGATAAATAGGGCGTTGGACGTGGGCGACCGGAATTCCATGTGGAGACAACTGGCCAGCGCCGTTACTGGACTCAGTAACGTAGAGGACGAATACGCACAGAGGTATATGGATGAATTGATGCGGCTGAAGGCAGTGGCCAGGGAGGAAGGCAGTGACTATCTGACCTGGAACGACATCCAGGCCTGTGTTGACCAGGTCAACTTGACCATACAGGAGGAGCACGAACgtattgTGGCCATCGGTCAGATCAACGAAGCTCTGGATGGGGGAGACCCACAGAACACCCTAGAAGCCCTCCTGCACTCTGCAGCCAAGCTAACAGACGTAGACCCCTCTGTCGCCCAGCACTACTACGACAAACTGCTTGAGGCCCGCAGGGAGAAGGCACATGAGACCGAGGACCCCTCTGCTGTGCTCTGGTTGGATGAGATCCAGAACGCCGTACTGATGTCCAATAAGGATACCCAGGAGGCCTTGCAGTTCTCCCAGGCCATCCAGGCCATTAACAGAGCGGTGGACAGTGGCGAGGCGCCTAAGACCCTGGCTGCACTGCGCTCCCCTGGGGCCGGCCTCTACGGAGTCACCCCTGAGTGTGTCCAGAACTACCAggacgacctggccaagatcaaaCAGGACAAGACCCAGGATGGTGACAACGGCAGTGACTGGATGAAGCACTGGGTGAAGGGAGGACACAACTACTATTACAACCTGAAGACAGGAGAGGGCTCCTGGACTGAACCTGCACACTTCCTCCAGAACAACACCCAGCTCAACAAGGAGGACATCCAGTCTGTGGTTTCCGGGGTGACCACCACCTACAACCGGGAGCAGCTGTGGCTGGCCAATGAGAGCCTGATTGCCAAGCTGCAGGCCGGATGCCGTGGCTACCTGGTGAGGAAAGGCCTGAAGGAGAGAAAAGACTTCCTGAAATCTCAGGACCCAGCCATTACCACCatacagGCTCATTTTAGAGGCTACAAGCAGAGGAAGGTCTATATAAAGAGGAAGGAGTACCTGAATGACCACAGCGAGGATGCTGTAAAGATCCAGTCGATGGTGAGGATGCACCAAGCTCGCAAGAAGTACAGAGACCGCCTGAAGCACTTCAAGGACCATATCAATGATGTGGTGAAGATCCAGGCGTTCATCAGAGCCAACAAAGCCAGAGACGACTACAAGACACTCatcaacGCTGACGATCCTCCCATGGCGGTGGTGCGCAAGTTCGTCCACCTCCTGGACCACAGCGACCAGGACTTTCAGGAAGAGCTGGACTTGATGAGGCTCCGGGAGGAGGTGGTCACCAACATCCGCTCCAACCAGCAGCTGGAGAATGACCTGAACCTGATGGACATCAAGATCGGCCTGCTGGTCAAGAACAAGATCACCCTGCAGGAGGTGGTGTCCCACAGCAACAAGCTGACCAAGAAGAACAAGGGCGAGCTGTCCAACCTGATGATGATGAACAAACAGAGAGGAGGCCTGAAGGCTCTGAGCAAGGAGAAGAGGCTCAAGCTGGAGGCCTATCAGTATCTTTTCTACCTGCTGCAGACCAACCCCACCTACCTGGCCAAGCTCATCTTCCAGATGCCCCAGAATAAGTCCACTAAGTTCATGGACTCTGTGATCTTCACCCTGTATAACTACGCCTCCAACCAGAGAGAGGAGTACCTGCTGCTCAAACTCTTCAAGACCGCCCTGCAGGAGGAGATCAAATCCAAAGTGGATCAGATCCAGGAGATCGTCACGGGCAACCCCACGGTCATCAAGATGGTGGTGAGCTTCAACCGCGGCGCCCGAGGCCAGAATGCACTGCGTCAGATCCTGGCACCTGTCGTCAAGGAAATCATGGACGACAAGACGCTGAACATCAAGACTGACCCGGTGGACATCTACAAGAGCTGGGTCAACCAGATGGAGACACAAACTGGAGAGgccagTAAACTACCCTATGAGGTAACACCAGAGCAGGCTATGAGTCACGAGGAGGTGCGCACTCGCCTGGAAGCGTCCATCAAGAACATGAGGACGGTCACAGACAAGTTCCTGTCCGCCATCATTGTCTCTGTGGACAAAATCCCGTATGGGATGCGTTTCACCTCCAAGGTGCTGAAGGACACACTCCATGAGAAGTTCCCCGACGCTACAGAGGACGAGCTTCTAAAGATCGTGGGTAACCTGCTGTACTACCGCTACATGAATCCGGCCATCGTGGCGCCCGACGCCTTCGACATCATCGACCTGTCGGCCGGAGGTCAGCTGACCACAGACCAACGGCGGAACCTGGGCTCCATCGCCAAGATGCTGCAGCACGCCGCGTCCAATAAGATGTTCTTGGGGGACAACGcccacctcaaccccatcaacgAGTACCTCAGCAGCTCCTACCAGAAGTTCAGGCGTTTCTTCTTGGCGGCGTGTGACGTCCCGTCATTGGAGGACAAGTTCAACGTGGATCAGTACTCTGACCTGGTCACGCTTCAGAAACCTGTCATCTACATCTCTATAGGGGAGGTCATCAACACACACAcgCTGCTGTTGGACCACCAGGATGCCATCGCCTCGGAGCACAACGACCCCATCCACGAGCTGCTGGAAGACCTGGGAGAGGTGCCCACCATAGAGTCCCTCATCGGTGagaaccccctccccccaggGGACCCCAACAGGGAGACGATGGGGAAGACAGAGGTGTCCCTCACCCTCGCCAACAAGTTTGATGTTCCCGGAGAGGCCAATGCCGAGATGGACGCCAGGACTCTACTGCTTAAcaCCAAGCGGCTGATCGTGGATGTGATCCGGTTCCAACCTGGAGAAACACTCACTGAGATTCTGGAGGGTGCTGCCAATCCTGAACAGGAAGTGGAGTACCAGCGTGCTATGCAGCGACGGGCCATCCGCGACGCCAAAACCCCAGAGAAGATGAAGCAGGCCAAGCCGGTGGTGGATGACAGCCTGACGCTGCAGGGCAAGAAGGACAAGATCAGGAGCAACCTGCAGCGCCTGGCAGAGCTGGGCAAGGTGCACCCTGAGAACCGCTACCAGGACCTCATCAACGACATCGCCAAGGACATCCGAAACCAGCGGCGGTATCGGCAGCGGAGGAAGGCGGAGCTGGTGAAGCTCCAACAGACAAATGCCGCCCTCAACTCCAAGACCGCCTTCTACAACGTCCAGATTGACTACTACAATCAGTACATCAAGACCTGCATGGACAACCTGGCCAGCAACAAGGGCAAgctGTCAAAGAAACCAGGCGACACCAAGGCCAAGAAGAGTAAACAGGTGTCTCAGAAGTACACCGCGGCTCGCCTCCATGAGAAGGGTGTGCTGATTGAGATTGAAGACCTGCAGACAAACCAgtTTAAGAACGTTATCTTTGAGATCTCTCCGTCGGAGGCGGTTGGAGTGTTCGATGTGAAGGCCAAGTTCATGGGAGTGCACTTGGAGACGTTACAGTTGGAATACCAGgACCTCCTGCAGCTGCAGTATGAGGGTGTGGCTGTGATGAAGCTCTTCGACAGGGCCACCATCAATGTCAACCTGCTCATCTTCCTGCTCAACAAGAAGTTTTACGGGAAATAGATGgatgagacagggagatggatggaaagagaaggagagggggctaCAGACACTGTTGAGAACAGAACATCTAACAGAGGGCCTTGGCTCTATGCTGTCTTAGCTCGGTTTCCCCCTCTTCCGCACTACTTTAAGTATATGTATTCATTATGTGCCTTATTGAGATGGAATATTCACCGTACGGTATGTGCCTTATCCGCCAAGGAAAAGTCCCCCGGAAGCCTGCTGGATGCTCCAAGTGTATCCTCGTCAGGATCCAGAGTGCTTGTTGCGttttgtgttactgtgttactgtaagACTGTCAAAGGTATAAGATATGGATTTGTCTGTCAGGCGCTTGTTTTCCGGTTATTTGAAACGCAATTCAACAGTCGCATGTTGATGACATCGCAAGCAATTTTGtcatacagtataactttaaggAACTTGCAAATCCACTATTGGCATAGGAAATAGCCTTTCAAGAGTAGACTGAACAATCAATATAGAAAAGATGTGTTATGCTTTGTGTTGAATAAATTTATAAAAGAAAACTGTCATTATTTGTTCTTTGTCAGTCCTCCAACTATAGTTAAGGTTACTTTCTTTTATTTTCCTTTTAAGGAGCATAGTTGTCAGATCAAATCACGCTTCATAGTTCTTTAGTCACACATTCACTATTAATTGAAAATACGGTGACTTCAGTTGATTTAACTCTGTTCACCACTGAAGGAGACCGTTCATACACTCAGTCTAGAGTGAGGTATTATATAACAATGACGAGAGATATGCTTTAGGTTCCAGTAGATGTCACTCACTGTACACTAAACAAACCGTCTCGGCACAGAATCCTTATGACAATCTGCTCCATTTCAGAAGACTGGAAAGCGTGATATACAGTACTGCCCTGTCAGAATAGttttgaaatgtttgtttttaacCAGTGTACCCTTGTATTGAAGTTAATTTACACTGGGCCTAACCAGGATATAGTTATCTAGGAGCCTAAGCTCTTTCGCCCGTAGTCCATAGAATGTTTTACATGATTTAAAGAATAAAGCTTTAATAATG

Function

NR:

description
PREDICTED: ras GTPase-activating-like protein IQGAP1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16848 IQGAP1; Ras GTPase-activating-like protein IQGAP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981135.1 True 6231 mRNA 0.52 37 81944654 82019523

Neighbor

gene id symbol gene type direction distance location
cdkn2aip LOC106587807 coding upstream 55955 81883393 ~ 81888699 (+)
trnap-ugg-9 NA coding upstream 75331 81869250 ~ 81869323 (+)
LOC110506150 LOC106562517 coding upstream 84156 81815343 ~ 81860498 (+)
LOC110526974 LOC106562522 coding upstream 209694 81681884 ~ 81734963 (+)
LOC118964937 NA coding upstream 282663 81659896 ~ 81661991 (+)
LOC118964938 LOC106562620 coding downstream 2488 82022011 ~ 82107452 (+)
LOC110526975 LOC106562727 coding downstream 109246 82128769 ~ 82198551 (+)
trnaa-ugc-18 NA coding downstream 130196 82149719 ~ 82149795 (+)
LOC110526669 hypk coding downstream 232329 82251852 ~ 82253308 (+)
LOC118965047 LOC106587629 coding downstream 256534 82276057 ~ 82276380 (+)
G551684 NA non-coding upstream 35922 81908493 ~ 81908732 (+)
G551683 NA non-coding upstream 38425 81905634 ~ 81906229 (+)
G551678 NA non-coding upstream 64512 81878909 ~ 81880142 (+)
G551675 NA non-coding upstream 72038 81872393 ~ 81872616 (+)
G551667 NA non-coding upstream 89900 81854267 ~ 81854754 (+)
G551721 NA non-coding downstream 92512 82112035 ~ 82114356 (+)
G551752 NA non-coding downstream 95869 82115392 ~ 82115740 (+)
G551770 NA non-coding downstream 135105 82154628 ~ 82155340 (+)
G551804 NA non-coding downstream 244272 82263795 ~ 82264106 (+)
G551848 NA non-coding downstream 365394 82384917 ~ 82385727 (+)
LOC110526107 scg3 other upstream 478456 81435094 ~ 81466198 (+)
G551043 NA other upstream 1023218 80920707 ~ 80921436 (+)
myef2 myef2 other upstream 1513725 80415414 ~ 80430972 (+)
G550305 NA other upstream 1744125 80200170 ~ 80200529 (+)
G551805 NA other downstream 245446 82264969 ~ 82265749 (+)
G551889 LOC106587688 other downstream 457395 82476918 ~ 82483802 (+)
LOC110526694 pcsk6 other downstream 570014 82532518 ~ 82627600 (+)

Expression


Co-expression Network