LOC118965047 (LOC106587629)


Basic Information

Item Value
gene id LOC118965047
gene name LOC106587629
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82276057 ~ 82276380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981788.1
ATGAAGACGTGGGAGGAGGCTCTGGAGTACTGCAGGGGTCACTACACCGACCTCCCCAGCCTACTCTCTAAGACTGAACATCTCCAGGCCCAGAGCAAGATAGAGGGTGCCCAGACCGACCATGTGTGGACGGGTCTGATCTTCCTGGCCAGAGAATGGCTCTGGGTGAACGGGGACCACCTGGAGTACCAGGCCTGGTCTGGCGGGAAGCTGCCCCACTGCCCCGCTCAATACCTCCACTGTGGGACCCTGACCAGAGATGGAGAGCACTGGGGAACCAGGAACTGTGAGGAGAGAAGGAACTTCCTCTGCTACAGAGCGTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981788.1 True 324 mRNA 0.60 1 82276057 82276380

Neighbor

gene id symbol gene type direction distance location
LOC110526669 hypk coding upstream 22749 82251852 ~ 82253308 (+)
LOC110526975 LOC106562727 coding upstream 77506 82128769 ~ 82198551 (+)
trnaa-ugc-18 NA coding upstream 126262 82149719 ~ 82149795 (+)
LOC118964938 LOC106562620 coding upstream 168605 82022011 ~ 82107452 (+)
LOC110506160 LOC106562619 coding upstream 256534 81944654 ~ 82019523 (+)
vps33b LOC106562628 coding downstream 31164 82307544 ~ 82318126 (+)
LOC110526676 prc1 coding downstream 41945 82318325 ~ 82330373 (+)
si:ch73-314g15.3 LOC106562630 coding downstream 55417 82331797 ~ 82343201 (+)
LOC110526684 LOC106587700 coding downstream 72429 82348809 ~ 82356001 (+)
LOC110526680 LOC106562633 coding downstream 86250 82362630 ~ 82365393 (+)
G551804 NA non-coding upstream 11951 82263795 ~ 82264106 (+)
G551770 NA non-coding upstream 120717 82154628 ~ 82155340 (+)
G551752 NA non-coding upstream 160317 82115392 ~ 82115740 (+)
G551721 NA non-coding upstream 161701 82112035 ~ 82114356 (+)
G551684 NA non-coding upstream 367325 81908493 ~ 81908732 (+)
G551848 NA non-coding downstream 108537 82384917 ~ 82385727 (+)
G551851 NA non-coding downstream 113068 82389448 ~ 82391425 (+)
G551863 NA non-coding downstream 144585 82420965 ~ 82421244 (+)
G551864 NA non-coding downstream 144977 82421357 ~ 82421616 (+)
G551865 NA non-coding downstream 145245 82421625 ~ 82422120 (+)
G551805 NA other upstream 10308 82264969 ~ 82265749 (+)
LOC110506150 LOC106562517 other upstream 415799 81815343 ~ 81860498 (+)
LOC110526107 scg3 other upstream 809859 81435094 ~ 81466198 (+)
G551889 LOC106587688 other downstream 200538 82476918 ~ 82483802 (+)
LOC110526694 pcsk6 other downstream 313157 82532518 ~ 82627600 (+)
G551950 NA other downstream 314188 82590568 ~ 82593162 (+)
G552080 NA other downstream 638250 82914630 ~ 82915052 (+)
LOC110506168 efl1 other downstream 992789 83183382 ~ 83285498 (+)

Expression


Co-expression Network