vps33b (LOC106562628)


Basic Information

Item Value
gene id vps33b
gene name LOC106562628
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 82307544 ~ 82318126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981151.1
AGTCATGTCTTGAGATACGGTGCCCTCTATTTACTTGTTCGTAGTGAAACAAAGATTCGCAACATCCCATCCGCACATCCGGAAACAAACCAAGGGAGGTGAATGGTTGGGCAGGTGTGTCACTCTGTTCCACCTCAGGCCCCATGGCTCACAGTGTCAGGAGAGATGCCCCTGAGCTCCCTGACTTCTCTCTGCTCAAGAGGCTGGCCAGGGACCAGCTCATTTACCTACTGGAACAGCTACCTGGGAGGAAGGACCTGTTCATTGAGGCAGATTTGATGAGCCCCCTAGACCGCATTGCTAATGTCACAACACTAAAGCAACATGATGTGGACAAGCTTTACAAAGTGGAACACAAACCCATTGTCAGCACCTCAGATCAACTATGCTTCCTGATCCGCCCAAGAATAAAAACTGTCAAGTGGATATGTGATGTGGTCAATGCAGACAAAGCATTTGGGAGATTCAGAAGATACAAGATCATATTTAGCCCTCAGAAGTTTTATGCATGCGAGAACCTTTTGGAGGAGCAGGGAATCTTTGGTGATGTGACTACTGACGAGTGGTCATTCTACCTCCTGCCCCTGGACGATGACATCATTAGCTTGGAGCTTCCGGAATTCTTCAGAGACTACTTCTTGGAGGGAGACCAGCGCTGGGTGAGAACAGCGGGTAGTGCCCTGCATCTCCTACACTCTGTCTACGGCCCCTTCTCTAAGGTGTATGGGATCGGACGATGCTCCAAGATGGCGTATGAATCGTGGAGGGagcaggtggaggagggggaacaGAGAGCGCGTCAAGCGGAGATCGGAAATGTGTTTCTCATTGACAGAGATGTGGACCTTGTGACTCCTCTGTGTTCCCAGGTTGTCTATGAAGGACTTGTCGATGATATTTTCAGAATTAAATGTGGATGTGTGGAGTTTTGTCCAGATGTCACCTCCTCTGACAAGAGTATAAAAGTGATGCTAAACTCTCAAGATAAGGTTTTTAACGAGATCAGGAACGAGCATTTCTCCCAGGTGTTTGGCTTCCTAAGTCAAAAGGCCCGAAACCTCCAGACTGCATATGATAAGCGTAGTGGAATGAACATTAAACAGATGAAGACGTTTGTGTCGGAGGAGCTGAAAGGGTTAAAACAGGAGCATCGGCTCCTCAGTCTGCATATTGGTGCCAGTGAGTCGATGATGAAGAAGAAAACGAAGCAGGACTTCCAAGAGCTGTTGAAGACAGAGCACTCCTTACTGGAGGGGTTTGAAATCCGTGAATGTATTTCCTACATAGAGGAGCATATCAATAGACAGGTCTCTATGGTGGAAAGTATGAGACTCCTTTGTCTGCTGTCTCTCACAGAAAACGGCCTCCTTCCCAAAGATTATCGGTCATTAAAAGCCCAGTTTCTACAGAGTTATGGCATTGAACACCTACTGACGTTTTCCAACCTGAAGCAGCTAGGCCTGCTGGTGGAGCAGCAGCCTGGAGAGACCCTCACTGTCATGGAGAGCAGAGTGGGCAAACTGGTCAACGACAAAACCGCAGGAAAGCTGACTGATGCCTTCTCCTCCCTGGCCAAGAAGAGCAATTTCCGTGCCTTGGGCAGGAGGCTCAATCTGGTGCCCAAGTCAGATGAAGAGTATGACCTCCGTGTCCCTCGAGACATGGCCTATATCTTCAGTGGAGCCTACATTCCTTTGAGCTGCAAACTCATCGAACAGGTATTGGAGCGTGATGGCTGGACAGGGCTCGAGGAAGTCACCCGCATGCTCAACGGACATGAATTTGCAGTCACAGcaGGGAGTAACGGATCAGACGCAAGGGTGAAGACCGATTCCCAGCGTATCATCCTAGTCATGTTCCTGGGTGGGTGCACCTTCTCAGAGATCTCAGCACTACGCTTCCTGGGCAGAGAGAAAGGTATTAAATTCATTGTGGTGACCACAGCTATCACAAACAGTGCCAGACTTCTGGAGTCTATGTTGGACAACCATGCATGAGTCCTGGGGTCTTTCTATCATTGCCAATGGAAGCATCCAGCTTGTGGTCAAAGACATCATGTGGACACATACAGATGACTTTTTGGACAATTTGCATCAACAATATGACAACAAGCTACATGCTTGCacctgttattcagagtcttgtATTGGAAGCAGTCACTGTCTAGGATAGATCTGATTCAGAAAAAAATGGATTGACGTTGGAATATATTCCATCATAGTGCTATACCAACTGCAAAAGGTGTACAAAGAATGTTGTTTTTTGTCCACAGTACAAAATAAATATGATGTTTTA
>XM_036981153.1
AGTCATGTCTTGAGATACGGTGCCCTCTATTTACTTGTTCGTAGTGAAACAAAGATTCGCAACATCCCATCCGCACATCCGGAAACAAACCAAGGGAGGTGAATGGTTGGGCAGGTGTGTCACTCTGTTCCACCTCAGGCCCCATGGCTCACAGTGTCAGGAGAGATGCCCCTGAGCTCCCTGACTTCTCTCTGCTCAAGAGGCTGGCCAGGGACCAGCTCATTTACCTACTGGAACAGCTACCTGGGAGGAAGGACCTGTTCATTGAGGCAGATTTGATGAGCCCCCTAGACCGCATTGCTAATGTCACAACACTAAAGCAACATGATGTGGACAAGCTTTACAAAGTGGAACACAAACCCATTGTCAGCACCTCAGATCAACTATGCTTCCTGATCCGCCCAAGAATAAAAACTGTCAAGTGGATATGTGATGTGGTCAATGCAGACAAAGCATTTGGGAGATTCAGAAGATACAAGATCATATTTAGCCCTCAGAAGTTTTATGCATGCGAGAACCTTTTGGAGGAGCAGGGAATCTTTGGTGATGTGACTACTGACGAGTGGTCATTCTACCTCCTGCCCCTGGACGATGACATCATTAGCTTGGAGCTTCCGGAATTCTTCAGAGACTACTTCTTGGAGGGAGACCAGCGCTGGGTGAGAACAGCGGGTAGTGCCCTGCATCTCCTACACTCTGTCTACGGCCCCTTCTCTAAGGTGTATGGGATCGGACGATGCTCCAAGATGGCGTATGAATCGTGGAGGGagcaggtggaggagggggaacaGAGAGCGCGTCAAGCGGAGATCGGAAATGTGTTTCTCATTGACAGAGATGTGGACCTTGTGACTCCTCTGTGTTCCCAGGTTGTCTATGAAGGACTTGTCGATGATATTTTCAGAATTAAATGTGGATGTGTGGAGTTTTGTCCAGATGTCACCTCCTCTGACAAGAGTATAAAAGTGATGCTAAACTCTCAAGATAAGGTTTTTAACGAGATCAGGAACGAGCATTTCTCCCAGGTGTTTGGCTTCCTAAGTCAAAAGGCCCGAAACCTCCAGACTGCATATGATAAGCGTAGTGGAATGAACATTAAACAGATGAAGACGTTTGTGTCGGAGGAGCTGAAAGGGTTAAAACAGGAGCATCGGCTCCTCAGTCTGCATATTGGTGCCAGTGAGTCGATGATGAAGAAGAAAACGAAGCAGGACTTCCAAGAGCTGTTGAAGACAGAGCACTCCTTACTGGAGGGGTTTGAAATCCGTGAATGTATTTCCTACATAGAGGAGCATATCAATAGACAGGTCTCTATGGTGGAAAGTATGAGACTCCTTTGTCTGCTGTCTCTCACAGAAAACGGCCTCCTTCCCAAAGATTATCGGTCATTAAAAGCCCAGTTTCTACAGAGTTATGGCATTGAACACCTACTGACGTTTTCCAACCTGAAGCAGCTAGGCCTGCTGGTGGAGCAGCAGCCTGGAGAGACCCTCACTGTCATGGAGAGCAGAGTGGGCAAACTGGTCAACGACAAAACCGCAGGAAAGCTGACTGATGCCTTCTCCTCCCTGGCCAAGAAGAGCAATTTCCGTGCCTTGGGCAGGAGGCTCAATCTGGTGCCCAAGTCAGATGAAGAGTATGACCTCCGTGTCCCTCGAGACATGGCCTATATCTTCAGTGGAGCCTACATTCCTTTGAGCTGCAAACTCATCGAACAGGTATTGGAGCGTGATGGCTGGACAGGGCTCGAGGAAGTCACCCGCATGCTCAACGGACATGAATTTGCAGTCACAGGGAGTAACGGATCAGACGCAAGGGTGAAGACCGATTCCCAGCGTATCATCCTAGTCATGTTCCTGGGTGGGTGCACCTTCTCAGAGATCTCAGCACTACGCTTCCTGGGCAGAGAGAAAGGTATTAAATTCATTGTGGTGACCACAGCTATCACAAACAGTGCCAGACTTCTGGAGTCTATGTTGGACAACCATGCATGAGTCCTGGGGTCTTTCTATCATTGCCAATGGAAGCATCCAGCTTGTGGTCAAAGACATCATGTGGACACATACAGATGACTTTTTGGACAATTTGCATCAACAATATGACAACAAGCTACATGCTTGCacctgttattcagagtcttgtATTGGAAGCAGTCACTGTCTAGGATAGATCTGATTCAGAAAAAAATGGATTGACGTTGGAATATATTCCATCATAGTGCTATACCAACTGCAAAAGGTGTACAAAGAATGTTGTTTTTTGTCCACAGTACAAAATAAATATGATGTTTTA
>XM_036981154.1
AGTCATGTCTTGAGATACGGTGCCCTCTATTTACTTGTTCGTAGTGAAACAAAGATTCGCAACATCCCATCCGCACATCCGGAAACAAACCAAGGGAGGTGAATGGTTGGGCAGGTGTGTCACTCTGTTCCACCTCAGGCCCCATGGCTCACAGTGTCAGGAGAGATGCCCCTGAGCTCCCTGACTTCTCTCTGCTCAAGAGGCTGGCCAGGGACCAGCTCATTTACCTACTGGAACAGCAACATGATGTGGACAAGCTTTACAAAGTGGAACACAAACCCATTGTCAGCACCTCAGATCAACTATGCTTCCTGATCCGCCCAAGAATAAAAACTGTCAAGTGGATATGTGATGTGGTCAATGCAGACAAAGCATTTGGGAGATTCAGAAGATACAAGATCATATTTAGCCCTCAGAAGTTTTATGCATGCGAGAACCTTTTGGAGGAGCAGGGAATCTTTGGTGATGTGACTACTGACGAGTGGTCATTCTACCTCCTGCCCCTGGACGATGACATCATTAGCTTGGAGCTTCCGGAATTCTTCAGAGACTACTTCTTGGAGGGAGACCAGCGCTGGGTGAGAACAGCGGGTAGTGCCCTGCATCTCCTACACTCTGTCTACGGCCCCTTCTCTAAGGTGTATGGGATCGGACGATGCTCCAAGATGGCGTATGAATCGTGGAGGGagcaggtggaggagggggaacaGAGAGCGCGTCAAGCGGAGATCGGAAATGTGTTTCTCATTGACAGAGATGTGGACCTTGTGACTCCTCTGTGTTCCCAGGTTGTCTATGAAGGACTTGTCGATGATATTTTCAGAATTAAATGTGGATGTGTGGAGTTTTGTCCAGATGTCACCTCCTCTGACAAGAGTATAAAAGTGATGCTAAACTCTCAAGATAAGGTTTTTAACGAGATCAGGAACGAGCATTTCTCCCAGGTGTTTGGCTTCCTAAGTCAAAAGGCCCGAAACCTCCAGACTGCATATGATAAGCGTAGTGGAATGAACATTAAACAGATGAAGACGTTTGTGTCGGAGGAGCTGAAAGGGTTAAAACAGGAGCATCGGCTCCTCAGTCTGCATATTGGTGCCAGTGAGTCGATGATGAAGAAGAAAACGAAGCAGGACTTCCAAGAGCTGTTGAAGACAGAGCACTCCTTACTGGAGGGGTTTGAAATCCGTGAATGTATTTCCTACATAGAGGAGCATATCAATAGACAGGTCTCTATGGTGGAAAGTATGAGACTCCTTTGTCTGCTGTCTCTCACAGAAAACGGCCTCCTTCCCAAAGATTATCGGTCATTAAAAGCCCAGTTTCTACAGAGTTATGGCATTGAACACCTACTGACGTTTTCCAACCTGAAGCAGCTAGGCCTGCTGGTGGAGCAGCAGCCTGGAGAGACCCTCACTGTCATGGAGAGCAGAGTGGGCAAACTGGTCAACGACAAAACCGCAGGAAAGCTGACTGATGCCTTCTCCTCCCTGGCCAAGAAGAGCAATTTCCGTGCCTTGGGCAGGAGGCTCAATCTGGTGCCCAAGTCAGATGAAGAGTATGACCTCCGTGTCCCTCGAGACATGGCCTATATCTTCAGTGGAGCCTACATTCCTTTGAGCTGCAAACTCATCGAACAGGTATTGGAGCGTGATGGCTGGACAGGGCTCGAGGAAGTCACCCGCATGCTCAACGGACATGAATTTGCAGTCACAGcaGGGAGTAACGGATCAGACGCAAGGGTGAAGACCGATTCCCAGCGTATCATCCTAGTCATGTTCCTGGGTGGGTGCACCTTCTCAGAGATCTCAGCACTACGCTTCCTGGGCAGAGAGAAAGGTATTAAATTCATTGTGGTGACCACAGCTATCACAAACAGTGCCAGACTTCTGGAGTCTATGTTGGACAACCATGCATGAGTCCTGGGGTCTTTCTATCATTGCCAATGGAAGCATCCAGCTTGTGGTCAAAGACATCATGTGGACACATACAGATGACTTTTTGGACAATTTGCATCAACAATATGACAACAAGCTACATGCTTGCacctgttattcagagtcttgtATTGGAAGCAGTCACTGTCTAGGATAGATCTGATTCAGAAAAAAATGGATTGACGTTGGAATATATTCCATCATAGTGCTATACCAACTGCAAAAGGTGTACAAAGAATGTTGTTTTTTGTCCACAGTACAAAATAAATATGATGTTTTA
>XM_036981152.1
AAAATCGTCCAATAACCTATAAGGGAGGTGAATGGTTGGGCAGGTGTGTCACTCTGTTCCACCTCAGGCCCCATGGCTCACAGTGTCAGGAGAGATGCCCCTGAGCTCCCTGACTTCTCTCTGCTCAAGAGGCTGGCCAGGGACCAGCTCATTTACCTACTGGAACAGCTACCTGGGAGGAAGGACCTGTTCATTGAGGCAGATTTGATGAGCCCCCTAGACCGCATTGCTAATGTCACAACACTAAAGCAACATGATGTGGACAAGCTTTACAAAGTGGAACACAAACCCATTGTCAGCACCTCAGATCAACTATGCTTCCTGATCCGCCCAAGAATAAAAACTGTCAAGTGGATATGTGATGTGGTCAATGCAGACAAAGCATTTGGGAGATTCAGAAGATACAAGATCATATTTAGCCCTCAGAAGTTTTATGCATGCGAGAACCTTTTGGAGGAGCAGGGAATCTTTGGTGATGTGACTACTGACGAGTGGTCATTCTACCTCCTGCCCCTGGACGATGACATCATTAGCTTGGAGCTTCCGGAATTCTTCAGAGACTACTTCTTGGAGGGAGACCAGCGCTGGGTGAGAACAGCGGGTAGTGCCCTGCATCTCCTACACTCTGTCTACGGCCCCTTCTCTAAGGTGTATGGGATCGGACGATGCTCCAAGATGGCGTATGAATCGTGGAGGGagcaggtggaggagggggaacaGAGAGCGCGTCAAGCGGAGATCGGAAATGTGTTTCTCATTGACAGAGATGTGGACCTTGTGACTCCTCTGTGTTCCCAGGTTGTCTATGAAGGACTTGTCGATGATATTTTCAGAATTAAATGTGGATGTGTGGAGTTTTGTCCAGATGTCACCTCCTCTGACAAGAGTATAAAAGTGATGCTAAACTCTCAAGATAAGGTTTTTAACGAGATCAGGAACGAGCATTTCTCCCAGGTGTTTGGCTTCCTAAGTCAAAAGGCCCGAAACCTCCAGACTGCATATGATAAGCGTAGTGGAATGAACATTAAACAGATGAAGACGTTTGTGTCGGAGGAGCTGAAAGGGTTAAAACAGGAGCATCGGCTCCTCAGTCTGCATATTGGTGCCAGTGAGTCGATGATGAAGAAGAAAACGAAGCAGGACTTCCAAGAGCTGTTGAAGACAGAGCACTCCTTACTGGAGGGGTTTGAAATCCGTGAATGTATTTCCTACATAGAGGAGCATATCAATAGACAGGTCTCTATGGTGGAAAGTATGAGACTCCTTTGTCTGCTGTCTCTCACAGAAAACGGCCTCCTTCCCAAAGATTATCGGTCATTAAAAGCCCAGTTTCTACAGAGTTATGGCATTGAACACCTACTGACGTTTTCCAACCTGAAGCAGCTAGGCCTGCTGGTGGAGCAGCAGCCTGGAGAGACCCTCACTGTCATGGAGAGCAGAGTGGGCAAACTGGTCAACGACAAAACCGCAGGAAAGCTGACTGATGCCTTCTCCTCCCTGGCCAAGAAGAGCAATTTCCGTGCCTTGGGCAGGAGGCTCAATCTGGTGCCCAAGTCAGATGAAGAGTATGACCTCCGTGTCCCTCGAGACATGGCCTATATCTTCAGTGGAGCCTACATTCCTTTGAGCTGCAAACTCATCGAACAGGTATTGGAGCGTGATGGCTGGACAGGGCTCGAGGAAGTCACCCGCATGCTCAACGGACATGAATTTGCAGTCACAGcaGGGAGTAACGGATCAGACGCAAGGGTGAAGACCGATTCCCAGCGTATCATCCTAGTCATGTTCCTGGGTGGGTGCACCTTCTCAGAGATCTCAGCACTACGCTTCCTGGGCAGAGAGAAAGGTATTAAATTCATTGTGGTGACCACAGCTATCACAAACAGTGCCAGACTTCTGGAGTCTATGTTGGACAACCATGCATGAGTCCTGGGGTCTTTCTATCATTGCCAATGGAAGCATCCAGCTTGTGGTCAAAGACATCATGTGGACACATACAGATGACTTTTTGGACAATTTGCATCAACAATATGACAACAAGCTACATGCTTGCacctgttattcagagtcttgtATTGGAAGCAGTCACTGTCTAGGATAGATCTGATTCAGAAAAAAATGGATTGACGTTGGAATATATTCCATCATAGTGCTATACCAACTGCAAAAGGTGTACAAAGAATGTTGTTTTTTGTCCACAGTACAAAATAAATATGATGTTTTA

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 33B-like isoform X1

GO: NA

KEGG:

id description
K23281 VPS33B; vacuolar protein sorting-associated protein 33B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981151.1 False 2295 mRNA 0.47 24 82307544 82318126
XM_036981153.1 False 2292 mRNA 0.47 24 82307544 82318126
XM_036981154.1 False 2214 mRNA 0.47 23 82307544 82318126
XM_036981152.1 True 2224 mRNA 0.47 24 82307703 82318126

Neighbor

gene id symbol gene type direction distance location
LOC118965047 LOC106587629 coding upstream 31164 82276057 ~ 82276380 (+)
LOC110526669 hypk coding upstream 54236 82251852 ~ 82253308 (+)
LOC110526975 LOC106562727 coding upstream 108993 82128769 ~ 82198551 (+)
trnaa-ugc-18 NA coding upstream 157749 82149719 ~ 82149795 (+)
LOC118964938 LOC106562620 coding upstream 200092 82022011 ~ 82107452 (+)
LOC110526676 prc1 coding downstream 199 82318325 ~ 82330373 (+)
si:ch73-314g15.3 LOC106562630 coding downstream 13671 82331797 ~ 82343201 (+)
LOC110526684 LOC106587700 coding downstream 30683 82348809 ~ 82356001 (+)
LOC110526680 LOC106562633 coding downstream 44504 82362630 ~ 82365393 (+)
LOC110526689 spg21 coding downstream 95391 82413517 ~ 82420631 (+)
G551804 NA non-coding upstream 43438 82263795 ~ 82264106 (+)
G551770 NA non-coding upstream 152204 82154628 ~ 82155340 (+)
G551752 NA non-coding upstream 191804 82115392 ~ 82115740 (+)
G551721 NA non-coding upstream 193188 82112035 ~ 82114356 (+)
G551684 NA non-coding upstream 398812 81908493 ~ 81908732 (+)
G551848 NA non-coding downstream 66791 82384917 ~ 82385727 (+)
G551851 NA non-coding downstream 71322 82389448 ~ 82391425 (+)
G551863 NA non-coding downstream 102839 82420965 ~ 82421244 (+)
G551864 NA non-coding downstream 103231 82421357 ~ 82421616 (+)
G551865 NA non-coding downstream 103499 82421625 ~ 82422120 (+)
G551805 NA other upstream 41795 82264969 ~ 82265749 (+)
LOC110506150 LOC106562517 other upstream 447286 81815343 ~ 81860498 (+)
LOC110526107 scg3 other upstream 841346 81435094 ~ 81466198 (+)
G551889 LOC106587688 other downstream 158792 82476918 ~ 82483802 (+)
LOC110526694 pcsk6 other downstream 271411 82532518 ~ 82627600 (+)
G551950 NA other downstream 272442 82590568 ~ 82593162 (+)
G552080 NA other downstream 596504 82914630 ~ 82915052 (+)
LOC110506168 efl1 other downstream 951043 83183382 ~ 83285498 (+)

Expression


Co-expression Network